TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 84 - 155 | 5.9e-14 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 371 - 471 | 1.2e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 413 - 579 | 8e-11 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 507 - 574 | 2.8e-06 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 2074 |
| AccB1I | GGYRCC | 1 cut(s) | 2074 |
| AccI | GTMKAC | 1 cut(s) | 415 |
| AclWI | GGATC | 1 cut(s) | 2114 |
| AcuI | CTGAAG | 4 cut(s) | 1360, 1430, 1919, 2124 |
| AfaI | GTAC | 8 cut(s) | 535, 922, 1129, 1230, 1780, 2027, 2070, 2076 |
| AfeI | AGCGCT | 1 cut(s) | 1373 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 2027 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2089 |
| AjnI | CCWGG | 2 cut(s) | 475, 1954 |
| Alw26I | GTCTC | 3 cut(s) | 958, 1220, 1992 |
| AlwI | GGATC | 1 cut(s) | 2114 |
| Aor51HI | AGCGCT | 1 cut(s) | 1373 |
| AoxI | GGCC | 1 cut(s) | 667 |
| ApeKI | GCWGC | 3 cut(s) | 1059, 1266, 1426 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 957, 989 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 14, 450 |
| Asp718I | GGTACC | 1 cut(s) | 2074 |
| AspLEI | GCGC | 1 cut(s) | 1374 |
| AspS9I | GGNCC | 1 cut(s) | 668 |
| AsuHPI | GGTGA | 3 cut(s) | 785, 1490, 2204 |
| AsuII | TTCGAA | 2 cut(s) | 31, 889 |
| AxyI | CCTNAGG | 1 cut(s) | 1221 |
| BanI | GGYRCC | 1 cut(s) | 2074 |
| BauI | CACGAG | 2 cut(s) | 663, 1806 |
| BbsI | GAAGAC | 5 cut(s) | 68, 100, 1001, 2112, 2161 |
| BbvI | GCAGC | 3 cut(s) | 1046, 1253, 1413 |
| BccI | CCATC | 4 cut(s) | 233, 247, 952, 1159 |
| BceAI | ACGGC | 1 cut(s) | 2081 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 270, 304, 1797, 1831 |
| BciT130I | CCWGG | 2 cut(s) | 477, 1956 |
| BciVI | GTATCC | 1 cut(s) | 726 |
| BclI | TGATCA | 1 cut(s) | 790 |
| BcoDI | GTCTC | 3 cut(s) | 958, 1220, 1992 |
| BfaI | CTAG | 1 cut(s) | 737 |
| BfoI | RGCGCY | 1 cut(s) | 1375 |
| BfuI | GTATCC | 1 cut(s) | 726 |
| BisI | GCNGC | 3 cut(s) | 1060, 1267, 1427 |
| BlsI | GCNGC | 3 cut(s) | 1061, 1268, 1428 |
| Bme1390I | CCNGG | 2 cut(s) | 477, 1956 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2089 |
| BmgT120I | GGNCC | 1 cut(s) | 668 |
| BmiI | GGNNCC | 3 cut(s) | 670, 1721, 2076 |
| BmrFI | CCNGG | 2 cut(s) | 477, 1956 |
| BmrI | ACTGGG | 1 cut(s) | 2230 |
| BmsI | GCATC | 2 cut(s) | 151, 1854 |
| BmuI | ACTGGG | 1 cut(s) | 2230 |
| BoxI | GACNNNNGTC | 1 cut(s) | 460 |
| BpiI | GAAGAC | 5 cut(s) | 68, 100, 1001, 2112, 2161 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 646, 678 |
| Bpu14I | TTCGAA | 2 cut(s) | 31, 889 |
| BpuEI | CTTGAG | 6 cut(s) | 917, 944, 1124, 1255, 1931, 2064 |
| BsaBI | GATNNNNATC | 2 cut(s) | 597, 1146 |
| BsaJI | CCNNGG | 2 cut(s) | 113, 2261 |
| BsaWI | WCCGGW | 1 cut(s) | 748 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 618, 648, 1989, 2019 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 2027 |
| Bse1I | ACTGG | 2 cut(s) | 2076, 2236 |
| Bse21I | CCTNAGG | 1 cut(s) | 1221 |
| Bse3DI | GCAATG | 5 cut(s) | 302, 409, 948, 953, 1155 |
| Bse8I | GATNNNNATC | 2 cut(s) | 597, 1146 |
| BseBI | CCWGG | 2 cut(s) | 477, 1956 |
| BseDI | CCNNGG | 2 cut(s) | 113, 2261 |
| BseGI | GGATG | 7 cut(s) | 446, 757, 940, 944, 1147, 1151, 2036 |
| BseJI | GATNNNNATC | 2 cut(s) | 597, 1146 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 2027 |
| BseMI | GCAATG | 5 cut(s) | 302, 409, 948, 953, 1155 |
| BseMII | CTCAG | 7 cut(s) | 71, 363, 1268, 1550, 1588, 2001, 2268 |
| BseNI | ACTGG | 2 cut(s) | 2076, 2236 |
| BseRI | GAGGAG | 2 cut(s) | 626, 1406 |
| BseXI | GCAGC | 3 cut(s) | 1046, 1253, 1413 |
| BsgI | GTGCAG | 1 cut(s) | 1837 |
| BshFI | GGCC | 1 cut(s) | 669 |
| BshNI | GGYRCC | 1 cut(s) | 2074 |
| BsiSI | CCGG | 2 cut(s) | 55, 749 |
| BslFI | GGGAC | 1 cut(s) | 1351 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 2027 |
| BsmAI | GTCTC | 3 cut(s) | 958, 1220, 1992 |
| BsmFI | GGGAC | 1 cut(s) | 1351 |
| BsmI | GAATGC | 1 cut(s) | 1668 |
| BsnI | GGCC | 1 cut(s) | 669 |
| Bsp119I | TTCGAA | 2 cut(s) | 31, 889 |
| Bsp1407I | TGTACA | 1 cut(s) | 1127 |
| Bsp143I | GATC | 4 cut(s) | 790, 838, 2119, 2209 |
| BspANI | GGCC | 1 cut(s) | 669 |
| BspCNI | CTCAG | 7 cut(s) | 72, 364, 1269, 1551, 1587, 2002, 2267 |
| BspLI | GGNNCC | 3 cut(s) | 670, 1721, 2076 |
| BspPI | GGATC | 1 cut(s) | 2114 |
| BspQI | GCTCTTC | 1 cut(s) | 465 |
| BspT104I | TTCGAA | 2 cut(s) | 31, 889 |
| BspT107I | GGYRCC | 1 cut(s) | 2074 |
| BsrDI | GCAATG | 5 cut(s) | 302, 409, 948, 953, 1155 |
| BsrGI | TGTACA | 1 cut(s) | 1127 |
| BsrI | ACTGG | 2 cut(s) | 2076, 2236 |
| BssECI | CCNNGG | 2 cut(s) | 113, 2261 |
| BssMI | GATC | 4 cut(s) | 790, 838, 2119, 2209 |
| BssNAI | GTATAC | 1 cut(s) | 416 |
| BssSI | CACGAG | 2 cut(s) | 663, 1806 |
| BssT1I | CCWWGG | 1 cut(s) | 113 |
| Bst1107I | GTATAC | 1 cut(s) | 416 |
| Bst2BI | CACGAG | 2 cut(s) | 663, 1806 |
| Bst2UI | CCWGG | 2 cut(s) | 477, 1956 |
| Bst4CI | ACNGT | 5 cut(s) | 211, 1568, 1864, 2111, 2262 |
| Bst6I | CTCTTC | 3 cut(s) | 20, 465, 579 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1851 |
| BstAUI | TGTACA | 1 cut(s) | 1127 |
| BstBI | TTCGAA | 2 cut(s) | 31, 889 |
| BstC8I | GCNNGC | 1 cut(s) | 1666 |
| BstDSI | CCRYGG | 1 cut(s) | 2261 |
| BstF5I | GGATG | 7 cut(s) | 446, 757, 940, 944, 1147, 1151, 2036 |
| BstH2I | RGCGCY | 1 cut(s) | 1375 |
| BstHHI | GCGC | 1 cut(s) | 1374 |
| BstKTI | GATC | 4 cut(s) | 793, 841, 2122, 2212 |
| BstMAI | GTCTC | 3 cut(s) | 958, 1220, 1992 |
| BstMBI | GATC | 4 cut(s) | 790, 838, 2119, 2209 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 81, 1684, 1851, 2063 |
| BstNI | CCWGG | 2 cut(s) | 477, 1956 |
| BstNSI | RCATGY | 1 cut(s) | 285 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 460 |
| BstSCI | CCNGG | 2 cut(s) | 475, 1954 |
| BstV1I | GCAGC | 3 cut(s) | 1046, 1253, 1413 |
| BstV2I | GAAGAC | 5 cut(s) | 68, 100, 1001, 2112, 2161 |
| BstX2I | RGATCY | 1 cut(s) | 2119 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 165 |
| BstYI | RGATCY | 1 cut(s) | 2119 |
| BstZ17I | GTATAC | 1 cut(s) | 416 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1221 |
| BsuI | GTATCC | 1 cut(s) | 726 |
| BsuRI | GGCC | 1 cut(s) | 669 |
| BtgI | CCRYGG | 1 cut(s) | 2261 |
| BtgZI | GCGATG | 1 cut(s) | 262 |
| BtsCI | GGATG | 7 cut(s) | 446, 757, 940, 944, 1147, 1151, 2036 |
| BtsIMutI | CAGTG | 3 cut(s) | 759, 1384, 1582 |
| Cac8I | GCNNGC | 1 cut(s) | 1666 |
| CfoI | GCGC | 1 cut(s) | 1374 |
| Cfr13I | GGNCC | 1 cut(s) | 668 |
| CseI | GACGC | 1 cut(s) | 492 |
| Csp6I | GTAC | 8 cut(s) | 534, 921, 1128, 1229, 1779, 2026, 2069, 2075 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1794, 1829 |
| CviAII | CATG | 5 cut(s) | 165, 282, 419, 518, 2159 |
| CviQI | GTAC | 8 cut(s) | 534, 921, 1128, 1229, 1779, 2026, 2069, 2075 |
| DpnI | GATC | 4 cut(s) | 792, 840, 2121, 2211 |
| DpnII | GATC | 4 cut(s) | 790, 838, 2119, 2209 |
| DraI | TTTAAA | 1 cut(s) | 1185 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2089 |
| Eam1104I | CTCTTC | 3 cut(s) | 20, 465, 579 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2089 |
| EarI | CTCTTC | 3 cut(s) | 20, 465, 579 |
| Eco130I | CCWWGG | 1 cut(s) | 113 |
| Eco47III | AGCGCT | 1 cut(s) | 1373 |
| Eco57I | CTGAAG | 4 cut(s) | 1360, 1430, 1919, 2124 |
| Eco81I | CCTNAGG | 1 cut(s) | 1221 |
| EcoRII | CCWGG | 2 cut(s) | 475, 1954 |
| EcoT14I | CCWWGG | 1 cut(s) | 113 |
| EcoT22I | ATGCAT | 1 cut(s) | 166 |
| ErhI | CCWWGG | 1 cut(s) | 113 |
| FaeI | CATG | 5 cut(s) | 168, 285, 422, 521, 2162 |
| FaqI | GGGAC | 1 cut(s) | 1351 |
| FatI | CATG | 5 cut(s) | 164, 281, 418, 517, 2158 |
| FbaI | TGATCA | 1 cut(s) | 790 |
| FblI | GTMKAC | 1 cut(s) | 415 |
| Fnu4HI | GCNGC | 3 cut(s) | 1060, 1267, 1427 |
| FokI | GGATG | 7 cut(s) | 453, 764, 927, 931, 1134, 1138, 2043 |
| Fsp4HI | GCNGC | 3 cut(s) | 1060, 1267, 1427 |
| FspBI | CTAG | 1 cut(s) | 737 |
| GlaI | GCGC | 1 cut(s) | 1373 |
| GluI | GCNGC | 3 cut(s) | 1060, 1267, 1427 |
| HaeII | RGCGCY | 1 cut(s) | 1375 |
| HaeIII | GGCC | 1 cut(s) | 669 |
| HapII | CCGG | 2 cut(s) | 55, 749 |
| HgaI | GACGC | 1 cut(s) | 492 |
| HhaI | GCGC | 1 cut(s) | 1374 |
| Hin1II | CATG | 5 cut(s) | 168, 285, 422, 521, 2162 |
| Hin6I | GCGC | 1 cut(s) | 1372 |
| HinP1I | GCGC | 1 cut(s) | 1372 |
| HindIII | AAGCTT | 2 cut(s) | 1322, 1685 |
| HpaII | CCGG | 2 cut(s) | 55, 749 |
| HphI | GGTGA | 3 cut(s) | 785, 1490, 2204 |
| Hpy166II | GTNNAC | 4 cut(s) | 416, 482, 626, 1980 |
| Hpy188I | TCNGA | 7 cut(s) | 81, 1071, 1460, 1560, 1637, 2209, 2257 |
| Hpy8I | GTNNAC | 4 cut(s) | 416, 482, 626, 1980 |
| Hpy99I | CGWCG | 1 cut(s) | 2115 |
| HpyAV | CCTTC | 9 cut(s) | 548, 619, 729, 908, 1115, 1368, 1574, 1667, 1894 |
| HpyCH4III | ACNGT | 5 cut(s) | 211, 1568, 1864, 2111, 2262 |
| HpyCH4IV | ACGT | 1 cut(s) | 339 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 81, 1684, 1851, 2063 |
| HpySE526I | ACGT | 1 cut(s) | 339 |
| Hsp92II | CATG | 5 cut(s) | 168, 285, 422, 521, 2162 |
| HspAI | GCGC | 1 cut(s) | 1372 |
| KpnI | GGTACC | 1 cut(s) | 2078 |
| Ksp22I | TGATCA | 1 cut(s) | 790 |
| Kzo9I | GATC | 4 cut(s) | 790, 838, 2119, 2209 |
| LguI | GCTCTTC | 1 cut(s) | 465 |
| LmnI | GCTCC | 2 cut(s) | 1393, 1725 |
| Lsp1109I | GCAGC | 3 cut(s) | 1046, 1253, 1413 |
| LweI | GCATC | 2 cut(s) | 151, 1854 |
| MaeI | CTAG | 1 cut(s) | 737 |
| MaeII | ACGT | 1 cut(s) | 339 |
| MaeIII | GTNAC | 6 cut(s) | 564, 845, 1414, 1562, 1762, 2005 |
| MalI | GATC | 4 cut(s) | 792, 840, 2121, 2211 |
| MboI | GATC | 4 cut(s) | 790, 838, 2119, 2209 |
| MfeI | CAATTG | 3 cut(s) | 1365, 1774, 1849 |
| MflI | RGATCY | 1 cut(s) | 2119 |
| MlyI | GAGTC | 7 cut(s) | 470, 960, 1015, 1167, 1222, 1501, 1994 |
| MmeI | TCCRAC | 1 cut(s) | 1747 |
| Mph1103I | ATGCAT | 1 cut(s) | 166 |
| MroXI | GAANNNNTTC | 2 cut(s) | 14, 450 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2163 |
| MspA1I | CMGCKG | 1 cut(s) | 21 |
| MspI | CCGG | 2 cut(s) | 55, 749 |
| MspR9I | CCNGG | 2 cut(s) | 477, 1956 |
| MunI | CAATTG | 3 cut(s) | 1365, 1774, 1849 |
| Mva1269I | GAATGC | 1 cut(s) | 1668 |
| MvaI | CCWGG | 2 cut(s) | 477, 1956 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 81, 1684, 1851, 2063 |
| NdeII | GATC | 4 cut(s) | 790, 838, 2119, 2209 |
| NlaIII | CATG | 5 cut(s) | 168, 285, 422, 521, 2162 |
| NlaIV | GGNNCC | 3 cut(s) | 670, 1721, 2076 |
| NmuCI | GTSAC | 1 cut(s) | 1562 |
| NsiI | ATGCAT | 1 cut(s) | 166 |
| NspI | RCATGY | 1 cut(s) | 285 |
| NspV | TTCGAA | 2 cut(s) | 31, 889 |
| PciSI | GCTCTTC | 1 cut(s) | 465 |
| PctI | GAATGC | 1 cut(s) | 1668 |
| PdmI | GAANNNNTTC | 2 cut(s) | 14, 450 |
| PfeI | GAWTC | 7 cut(s) | 598, 937, 1031, 1078, 1238, 1285, 2249 |
| PflFI | GACNNNGTC | 1 cut(s) | 486 |
| PfoI | TCCNGGA | 1 cut(s) | 1954 |
| PkrI | GCNGC | 3 cut(s) | 1061, 1268, 1428 |
| PleI | GAGTC | 7 cut(s) | 469, 960, 1014, 1167, 1221, 1500, 1994 |
| PpsI | GAGTC | 7 cut(s) | 469, 960, 1014, 1167, 1221, 1500, 1994 |
| PshAI | GACNNNNGTC | 1 cut(s) | 460 |
| Psp6I | CCWGG | 2 cut(s) | 475, 1954 |
| PspGI | CCWGG | 2 cut(s) | 475, 1954 |
| PspN4I | GGNNCC | 3 cut(s) | 670, 1721, 2076 |
| PspPI | GGNCC | 1 cut(s) | 668 |
| PsuI | RGATCY | 1 cut(s) | 2119 |
| PsyI | GACNNNGTC | 1 cut(s) | 486 |
| PvuII | CAGCTG | 1 cut(s) | 21 |
| RsaI | GTAC | 8 cut(s) | 535, 922, 1129, 1230, 1780, 2027, 2070, 2076 |
| RsaNI | GTAC | 8 cut(s) | 534, 921, 1128, 1229, 1779, 2026, 2069, 2075 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2163 |
| SapI | GCTCTTC | 1 cut(s) | 465 |
| SatI | GCNGC | 3 cut(s) | 1060, 1267, 1427 |
| Sau3AI | GATC | 4 cut(s) | 790, 838, 2119, 2209 |
| Sau96I | GGNCC | 1 cut(s) | 668 |
| SchI | GAGTC | 7 cut(s) | 470, 960, 1015, 1167, 1222, 1501, 1994 |
| ScrFI | CCNGG | 2 cut(s) | 477, 1956 |
| SfaNI | GCATC | 2 cut(s) | 151, 1854 |
| SfuI | TTCGAA | 2 cut(s) | 31, 889 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2163 |
| SmlI | CTYRAG | 6 cut(s) | 896, 959, 1103, 1270, 1910, 2079 |
| SmoI | CTYRAG | 6 cut(s) | 896, 959, 1103, 1270, 1910, 2079 |
| SspI | AATATT | 2 cut(s) | 787, 1794 |
| SspMI | CTAG | 1 cut(s) | 737 |
| StyD4I | CCNGG | 2 cut(s) | 475, 1954 |
| StyI | CCWWGG | 1 cut(s) | 113 |
| TaaI | ACNGT | 5 cut(s) | 211, 1568, 1864, 2111, 2262 |
| TaiI | ACGT | 1 cut(s) | 342 |
| TaqI | TCGA | 4 cut(s) | 31, 454, 889, 2187 |
| TatI | WGTACW | 4 cut(s) | 1127, 1228, 1778, 2068 |
| TfiI | GAWTC | 7 cut(s) | 598, 937, 1031, 1078, 1238, 1285, 2249 |
| TscAI | CASTG | 3 cut(s) | 766, 1384, 1582 |
| TseFI | GTSAC | 1 cut(s) | 1562 |
| TseI | GCWGC | 3 cut(s) | 1059, 1266, 1426 |
| Tsp45I | GTSAC | 1 cut(s) | 1562 |
| TspGWI | ACGGA | 4 cut(s) | 205, 1931, 2043, 2079 |
| TspRI | CASTG | 3 cut(s) | 766, 1384, 1582 |
| Tth111I | GACNNNGTC | 1 cut(s) | 486 |
| XceI | RCATGY | 1 cut(s) | 285 |
| XmiI | GTMKAC | 1 cut(s) | 415 |
| XmnI | GAANNNNTTC | 2 cut(s) | 14, 450 |
| XspI | CTAG | 1 cut(s) | 737 |
| Zsp2I | ATGCAT | 1 cut(s) | 166 |