TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 18 - 192 | 1.7e-52 | TIR domain |
| TIR_2 | PF13676 | 21 - 117 | 3.5e-14 | TIR domain |
| NB-ARC | PF00931 | 216 - 370 | 1.1e-19 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 439 - 507 | 4.9e-18 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 581 - 687 | 9.1e-15 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 605 - 691 | 9.2e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 760 - 838 | 2.8e-09 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 769 - 806 | 1.9e-06 | Leucine rich repeat |
| LRR_4 | PF12799 | 772 - 807 | 6.5e-07 | Leucine Rich repeats (2 copies) |
| C-JID | PF20160 | 908 - 1050 | 4.6e-18 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 875, 1154 |
| AarI | CACCTGC | 1 cut(s) | 1530 |
| AatII | GACGTC | 2 cut(s) | 654, 1572 |
| Acc36I | ACCTGC | 2 cut(s) | 1530, 1539 |
| AccB1I | GGYRCC | 1 cut(s) | 1916 |
| AccBSI | CCGCTC | 1 cut(s) | 710 |
| AccI | GTMKAC | 2 cut(s) | 497, 790 |
| AciI | CCGC | 5 cut(s) | 655, 681, 710, 1513, 3061 |
| AclWI | GGATC | 6 cut(s) | 152, 338, 1224, 1311, 1434, 2337 |
| AcsI | RAATTY | 6 cut(s) | 288, 481, 734, 1272, 2183, 2733 |
| AcuI | CTGAAG | 3 cut(s) | 174, 477, 1140 |
| AcyI | GRCGYC | 3 cut(s) | 651, 1569, 3205 |
| AfaI | GTAC | 6 cut(s) | 357, 1705, 1806, 2574, 2747, 3127 |
| AfeI | AGCGCT | 1 cut(s) | 2530 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 2761 |
| AflII | CTTAAG | 1 cut(s) | 2675 |
| AflIII | ACRYGT | 1 cut(s) | 1576 |
| AhlI | ACTAGT | 1 cut(s) | 280 |
| AjnI | CCWGG | 3 cut(s) | 1726, 2791, 2956 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 576, 608, 1116, 1148 |
| AleI | CACNNNNGTG | 1 cut(s) | 2757 |
| Alw21I | GWGCWC | 1 cut(s) | 1240 |
| Alw26I | GTCTC | 1 cut(s) | 2307 |
| Alw44I | GTGCAC | 1 cut(s) | 1236 |
| AlwI | GGATC | 6 cut(s) | 152, 338, 1224, 1311, 1434, 2337 |
| Ama87I | CYCGRG | 1 cut(s) | 2429 |
| Aor51HI | AGCGCT | 1 cut(s) | 2530 |
| AoxI | GGCC | 2 cut(s) | 2440, 2898 |
| ApaLI | GTGCAC | 1 cut(s) | 1236 |
| ApeKI | GCWGC | 7 cut(s) | 119, 203, 322, 613, 2207, 2481, 2785 |
| ApoI | RAATTY | 6 cut(s) | 288, 481, 734, 1272, 2183, 2733 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 641, 673, 2251, 2283 |
| AseI | ATTAAT | 2 cut(s) | 1620, 3192 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1128, 1328, 1962 |
| AspLEI | GCGC | 1 cut(s) | 2531 |
| AspS9I | GGNCC | 4 cut(s) | 2440, 2877, 2898, 3121 |
| AsuC2I | CCSGG | 2 cut(s) | 1536, 2724 |
| AsuHPI | GGTGA | 4 cut(s) | 92, 1576, 2205, 2744 |
| AvaI | CYCGRG | 1 cut(s) | 2429 |
| AvaII | GGWCC | 2 cut(s) | 2877, 3121 |
| BaeGI | GKGCMC | 1 cut(s) | 1240 |
| BanI | GGYRCC | 1 cut(s) | 1916 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2674, 2706 |
| BauI | CACGAG | 2 cut(s) | 729, 2991 |
| BbsI | GAAGAC | 6 cut(s) | 1163, 1572, 1573, 1997, 2373, 2467 |
| Bbv12I | GWGCWC | 1 cut(s) | 1240 |
| BbvI | GCAGC | 7 cut(s) | 106, 190, 309, 625, 2219, 2493, 2772 |
| BccI | CCATC | 4 cut(s) | 936, 1454, 2518, 2695 |
| BceAI | ACGGC | 1 cut(s) | 1930 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1388, 1422, 2268, 2302 |
| BciT130I | CCWGG | 3 cut(s) | 1728, 2793, 2958 |
| BcnI | CCSGG | 2 cut(s) | 1536, 2724 |
| BcoDI | GTCTC | 1 cut(s) | 2307 |
| BcuI | ACTAGT | 1 cut(s) | 280 |
| BfaI | CTAG | 9 cut(s) | 281, 590, 1002, 1307, 1334, 1679, 1694, 2451, 3237 |
| BfmI | CTRYAG | 1 cut(s) | 2778 |
| BfoI | RGCGCY | 1 cut(s) | 2532 |
| BfrI | CTTAAG | 1 cut(s) | 2675 |
| BfuAI | ACCTGC | 2 cut(s) | 1530, 1539 |
| BglII | AGATCT | 4 cut(s) | 443, 1309, 2041, 2398 |
| BisI | GCNGC | 7 cut(s) | 120, 204, 323, 614, 2208, 2482, 2786 |
| BlsI | GCNGC | 7 cut(s) | 121, 205, 324, 615, 2209, 2483, 2787 |
| Bme1390I | CCNGG | 5 cut(s) | 1536, 1728, 2724, 2793, 2958 |
| Bme18I | GGWCC | 2 cut(s) | 2877, 3121 |
| BmeT110I | CYCGRG | 1 cut(s) | 2429 |
| BmgT120I | GGNCC | 4 cut(s) | 2440, 2877, 2898, 3121 |
| BmiI | GGNNCC | 5 cut(s) | 865, 1918, 2879, 3122, 3307 |
| BmrFI | CCNGG | 5 cut(s) | 1536, 1728, 2724, 2793, 2958 |
| BmrI | ACTGGG | 4 cut(s) | 1250, 1259, 2355, 3294 |
| BmsI | GCATC | 7 cut(s) | 263, 1464, 2219, 2363, 2797, 3133, 3242 |
| BmuI | ACTGGG | 4 cut(s) | 1250, 1259, 2355, 3294 |
| BoxI | GACNNNNGTC | 2 cut(s) | 1878, 2925 |
| BpiI | GAAGAC | 6 cut(s) | 1163, 1572, 1573, 1997, 2373, 2467 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 211, 243, 710, 742, 712, 744, 891, 923 |
| BpuEI | CTTGAG | 3 cut(s) | 589, 1100, 2486 |
| BpuMI | CCSGG | 2 cut(s) | 1536, 2724 |
| Bsa29I | ATCGAT | 1 cut(s) | 1472 |
| BsaAI | YACGTR | 1 cut(s) | 1808 |
| BsaBI | GATNNNNATC | 3 cut(s) | 342, 1308, 2046 |
| BsaHI | GRCGYC | 3 cut(s) | 651, 1569, 3205 |
| BsaJI | CCNNGG | 2 cut(s) | 1726, 2957 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 2761 |
| Bse118I | RCCGGY | 1 cut(s) | 1919 |
| Bse1I | ACTGG | 7 cut(s) | 617, 1245, 1254, 1392, 2331, 2361, 3300 |
| Bse3DI | GCAATG | 3 cut(s) | 1338, 2657, 3187 |
| Bse8I | GATNNNNATC | 3 cut(s) | 342, 1308, 2046 |
| BseBI | CCWGG | 3 cut(s) | 1728, 2793, 2958 |
| BseCI | ATCGAT | 1 cut(s) | 1472 |
| BseDI | CCNNGG | 2 cut(s) | 1726, 2957 |
| BseGI | GGATG | 9 cut(s) | 160, 280, 421, 652, 2089, 2204, 2378, 2788, 3232 |
| BseJI | GATNNNNATC | 3 cut(s) | 342, 1308, 2046 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 2761 |
| BseMI | GCAATG | 3 cut(s) | 1338, 2657, 3187 |
| BseMII | CTCAG | 6 cut(s) | 59, 59, 1501, 1616, 2416, 2885 |
| BseNI | ACTGG | 7 cut(s) | 617, 1245, 1254, 1392, 2331, 2361, 3300 |
| BseRI | GAGGAG | 4 cut(s) | 33, 1913, 2837, 3164 |
| BseSI | GKGCMC | 1 cut(s) | 1240 |
| BseXI | GCAGC | 7 cut(s) | 106, 190, 309, 625, 2219, 2493, 2772 |
| BsgI | GTGCAG | 2 cut(s) | 452, 2500 |
| BshFI | GGCC | 2 cut(s) | 2442, 2900 |
| BshNI | GGYRCC | 1 cut(s) | 1916 |
| BshVI | ATCGAT | 1 cut(s) | 1472 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1240 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2429 |
| BsiSI | CCGG | 5 cut(s) | 1535, 1920, 2081, 2276, 2724 |
| BsiWI | CGTACG | 1 cut(s) | 3125 |
| BslFI | GGGAC | 2 cut(s) | 141, 2863 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 2761 |
| BsmAI | GTCTC | 1 cut(s) | 2307 |
| BsmFI | GGGAC | 2 cut(s) | 141, 2863 |
| BsmI | GAATGC | 4 cut(s) | 302, 1100, 1956, 2311 |
| BsnI | GGCC | 2 cut(s) | 2442, 2900 |
| BsoBI | CYCGRG | 1 cut(s) | 2429 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1240 |
| Bsp1407I | TGTACA | 1 cut(s) | 1703 |
| BspACI | CCGC | 5 cut(s) | 655, 681, 710, 1513, 3061 |
| BspANI | GGCC | 2 cut(s) | 2442, 2900 |
| BspCNI | CTCAG | 6 cut(s) | 58, 60, 1500, 1617, 2415, 2886 |
| BspDI | ATCGAT | 1 cut(s) | 1472 |
| BspHI | TCATGA | 3 cut(s) | 397, 856, 3319 |
| BspLI | GGNNCC | 5 cut(s) | 865, 1918, 2879, 3122, 3307 |
| BspMI | ACCTGC | 2 cut(s) | 1530, 1539 |
| BspPI | GGATC | 6 cut(s) | 152, 338, 1224, 1311, 1434, 2337 |
| BspQI | GCTCTTC | 1 cut(s) | 3261 |
| BspT107I | GGYRCC | 1 cut(s) | 1916 |
| BspTI | CTTAAG | 1 cut(s) | 2675 |
| BsrBI | CCGCTC | 1 cut(s) | 710 |
| BsrDI | GCAATG | 3 cut(s) | 1338, 2657, 3187 |
| BsrFI | RCCGGY | 1 cut(s) | 1919 |
| BsrGI | TGTACA | 1 cut(s) | 1703 |
| BsrI | ACTGG | 7 cut(s) | 617, 1245, 1254, 1392, 2331, 2361, 3300 |
| BssAI | RCCGGY | 1 cut(s) | 1919 |
| BssECI | CCNNGG | 2 cut(s) | 1726, 2957 |
| BssNAI | GTATAC | 1 cut(s) | 498 |
| BssNI | GRCGYC | 3 cut(s) | 651, 1569, 3205 |
| BssSI | CACGAG | 2 cut(s) | 729, 2991 |
| Bst1107I | GTATAC | 1 cut(s) | 498 |
| Bst2BI | CACGAG | 2 cut(s) | 729, 2991 |
| Bst2UI | CCWGG | 3 cut(s) | 1728, 2793, 2958 |
| Bst4CI | ACNGT | 6 cut(s) | 319, 1453, 2612, 2779, 2831, 3130 |
| Bst6I | CTCTTC | 3 cut(s) | 1249, 1311, 3261 |
| BstACI | GRCGYC | 3 cut(s) | 651, 1569, 3205 |
| BstAFI | CTTAAG | 1 cut(s) | 2675 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 200, 1483 |
| BstAUI | TGTACA | 1 cut(s) | 1703 |
| BstBAI | YACGTR | 1 cut(s) | 1808 |
| BstC8I | GCNNGC | 1 cut(s) | 1798 |
| BstDEI | CTNAG | 8 cut(s) | 45, 68, 1220, 1487, 1625, 2333, 2402, 2894 |
| BstF5I | GGATG | 9 cut(s) | 160, 280, 421, 652, 2089, 2204, 2378, 2788, 3232 |
| BstH2I | RGCGCY | 1 cut(s) | 2532 |
| BstHHI | GCGC | 1 cut(s) | 2531 |
| BstMAI | GTCTC | 1 cut(s) | 2307 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 200, 1483, 1545, 2643, 3186, 3251 |
| BstNI | CCWGG | 3 cut(s) | 1728, 2793, 2958 |
| BstNSI | RCATGY | 3 cut(s) | 1347, 1580, 2926 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 1878, 2925 |
| BstSCI | CCNGG | 5 cut(s) | 1534, 1726, 2722, 2791, 2956 |
| BstSFI | CTRYAG | 1 cut(s) | 2778 |
| BstSLI | GKGCMC | 1 cut(s) | 1240 |
| BstV1I | GCAGC | 7 cut(s) | 106, 190, 309, 625, 2219, 2493, 2772 |
| BstV2I | GAAGAC | 6 cut(s) | 1163, 1572, 1573, 1997, 2373, 2467 |
| BstX2I | RGATCY | 8 cut(s) | 443, 1216, 1303, 1309, 1439, 2041, 2329, 2398 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3332 |
| BstYI | RGATCY | 8 cut(s) | 443, 1216, 1303, 1309, 1439, 2041, 2329, 2398 |
| BstZ17I | GTATAC | 1 cut(s) | 498 |
| Bsu15I | ATCGAT | 1 cut(s) | 1472 |
| BsuRI | GGCC | 2 cut(s) | 2442, 2900 |
| BsuTUI | ATCGAT | 1 cut(s) | 1472 |
| BtsCI | GGATG | 9 cut(s) | 160, 280, 421, 652, 2089, 2204, 2378, 2788, 3232 |
| BtsI | GCAGTG | 3 cut(s) | 1240, 1807, 2020 |
| BtsIMutI | CAGTG | 7 cut(s) | 53, 1238, 1240, 1807, 2020, 2368, 3307 |
| BveI | ACCTGC | 2 cut(s) | 1530, 1539 |
| Cac8I | GCNNGC | 1 cut(s) | 1798 |
| CciI | TCATGA | 3 cut(s) | 397, 856, 3319 |
| CfoI | GCGC | 1 cut(s) | 2531 |
| Cfr10I | RCCGGY | 1 cut(s) | 1919 |
| Cfr13I | GGNCC | 4 cut(s) | 2440, 2877, 2898, 3121 |
| ClaI | ATCGAT | 1 cut(s) | 1472 |
| CseI | GACGC | 2 cut(s) | 2915, 3213 |
| Csp6I | GTAC | 6 cut(s) | 356, 1704, 1805, 2573, 2746, 3126 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1998, 2033, 2999, 3034 |
| CviQI | GTAC | 6 cut(s) | 356, 1704, 1805, 2573, 2746, 3126 |
| DdeI | CTNAG | 8 cut(s) | 45, 68, 1220, 1487, 1625, 2333, 2402, 2894 |
| DraI | TTTAAA | 3 cut(s) | 379, 1611, 1663 |
| Eam1104I | CTCTTC | 3 cut(s) | 1249, 1311, 3261 |
| EarI | CTCTTC | 3 cut(s) | 1249, 1311, 3261 |
| Eco32I | GATATC | 1 cut(s) | 3028 |
| Eco47I | GGWCC | 2 cut(s) | 2877, 3121 |
| Eco47III | AGCGCT | 1 cut(s) | 2530 |
| Eco57I | CTGAAG | 3 cut(s) | 174, 477, 1140 |
| Eco88I | CYCGRG | 1 cut(s) | 2429 |
| EcoRI | GAATTC | 3 cut(s) | 288, 481, 2183 |
| EcoRII | CCWGG | 3 cut(s) | 1726, 2791, 2956 |
| EcoRV | GATATC | 1 cut(s) | 3028 |
| EcoT22I | ATGCAT | 3 cut(s) | 256, 302, 1479 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1116, 1148 |
| FaqI | GGGAC | 2 cut(s) | 141, 2863 |
| FauI | CCCGC | 2 cut(s) | 674, 3068 |
| FblI | GTMKAC | 2 cut(s) | 497, 790 |
| Fnu4HI | GCNGC | 7 cut(s) | 120, 204, 323, 614, 2208, 2482, 2786 |
| FokI | GGATG | 9 cut(s) | 167, 287, 428, 659, 2096, 2211, 2385, 2775, 3239 |
| Fsp4HI | GCNGC | 7 cut(s) | 120, 204, 323, 614, 2208, 2482, 2786 |
| FspBI | CTAG | 9 cut(s) | 281, 590, 1002, 1307, 1334, 1679, 1694, 2451, 3237 |
| GlaI | GCGC | 1 cut(s) | 2530 |
| GluI | GCNGC | 7 cut(s) | 120, 204, 323, 614, 2208, 2482, 2786 |
| HaeII | RGCGCY | 1 cut(s) | 2532 |
| HaeIII | GGCC | 2 cut(s) | 2442, 2900 |
| HapII | CCGG | 5 cut(s) | 1535, 1920, 2081, 2276, 2724 |
| HgaI | GACGC | 2 cut(s) | 2915, 3213 |
| HhaI | GCGC | 1 cut(s) | 2531 |
| Hin1I | GRCGYC | 3 cut(s) | 651, 1569, 3205 |
| Hin6I | GCGC | 1 cut(s) | 2529 |
| HinP1I | GCGC | 1 cut(s) | 2529 |
| HincII | GTYRAC | 5 cut(s) | 261, 601, 1648, 1723, 2954 |
| HindII | GTYRAC | 5 cut(s) | 261, 601, 1648, 1723, 2954 |
| HindIII | AAGCTT | 2 cut(s) | 1853, 2066 |
| HpaII | CCGG | 5 cut(s) | 1535, 1920, 2081, 2276, 2724 |
| HphI | GGTGA | 4 cut(s) | 92, 1576, 2205, 2744 |
| Hpy99I | CGWCG | 1 cut(s) | 3207 |
| HpyAV | CCTTC | 9 cut(s) | 761, 829, 854, 863, 1042, 1206, 1691, 1947, 3218 |
| HpyCH4III | ACNGT | 6 cut(s) | 319, 1453, 2612, 2779, 2831, 3130 |
| HpyCH4IV | ACGT | 4 cut(s) | 651, 1068, 1569, 1807 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 200, 1483, 1545, 2643, 3186, 3251 |
| HpyF3I | CTNAG | 8 cut(s) | 45, 68, 1220, 1487, 1625, 2333, 2402, 2894 |
| HpySE526I | ACGT | 4 cut(s) | 651, 1068, 1569, 1807 |
| Hsp92I | GRCGYC | 3 cut(s) | 651, 1569, 3205 |
| HspAI | GCGC | 1 cut(s) | 2529 |
| LguI | GCTCTTC | 1 cut(s) | 3261 |
| LmnI | GCTCC | 5 cut(s) | 863, 1230, 1900, 2725, 3151 |
| Lsp1109I | GCAGC | 7 cut(s) | 106, 190, 309, 625, 2219, 2493, 2772 |
| LweI | GCATC | 7 cut(s) | 263, 1464, 2219, 2363, 2797, 3133, 3242 |
| MaeI | CTAG | 9 cut(s) | 281, 590, 1002, 1307, 1334, 1679, 1694, 2451, 3237 |
| MaeII | ACGT | 4 cut(s) | 651, 1068, 1569, 1807 |
| MaeIII | GTNAC | 7 cut(s) | 1262, 1375, 1628, 2267, 2336, 2701, 2804 |
| MbiI | CCGCTC | 1 cut(s) | 710 |
| MfeI | CAATTG | 1 cut(s) | 207 |
| MflI | RGATCY | 8 cut(s) | 443, 1216, 1303, 1309, 1439, 2041, 2329, 2398 |
| MhlI | GDGCHC | 1 cut(s) | 1240 |
| MlyI | GAGTC | 4 cut(s) | 596, 1636, 1743, 2838 |
| MmeI | TCCRAC | 1 cut(s) | 574 |
| Mph1103I | ATGCAT | 3 cut(s) | 256, 302, 1479 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1128, 1328, 1962 |
| MslI | CAYNNNNRTG | 3 cut(s) | 114, 507, 2757 |
| MspCI | CTTAAG | 1 cut(s) | 2675 |
| MspI | CCGG | 5 cut(s) | 1535, 1920, 2081, 2276, 2724 |
| MspR9I | CCNGG | 5 cut(s) | 1536, 1728, 2724, 2793, 2958 |
| MunI | CAATTG | 1 cut(s) | 207 |
| Mva1269I | GAATGC | 4 cut(s) | 302, 1100, 1956, 2311 |
| MvaI | CCWGG | 3 cut(s) | 1728, 2793, 2958 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 200, 1483, 1545, 2643, 3186, 3251 |
| NciI | CCSGG | 2 cut(s) | 1536, 2724 |
| NlaIV | GGNNCC | 5 cut(s) | 865, 1918, 2879, 3122, 3307 |
| NmuCI | GTSAC | 5 cut(s) | 1628, 2267, 2336, 2701, 2804 |
| NsiI | ATGCAT | 3 cut(s) | 256, 302, 1479 |
| NspI | RCATGY | 3 cut(s) | 1347, 1580, 2926 |
| OliI | CACNNNNGTG | 1 cut(s) | 2757 |
| PagI | TCATGA | 3 cut(s) | 397, 856, 3319 |
| PaqCI | CACCTGC | 1 cut(s) | 1530 |
| PciI | ACATGT | 1 cut(s) | 1576 |
| PciSI | GCTCTTC | 1 cut(s) | 3261 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 657 |
| PctI | GAATGC | 4 cut(s) | 302, 1100, 1956, 2311 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1128, 1328, 1962 |
| Pfl23II | CGTACG | 1 cut(s) | 3125 |
| PfoI | TCCNGGA | 1 cut(s) | 2722 |
| PkrI | GCNGC | 7 cut(s) | 121, 205, 324, 615, 2209, 2483, 2787 |
| PleI | GAGTC | 4 cut(s) | 596, 1635, 1743, 2838 |
| PpsI | GAGTC | 4 cut(s) | 596, 1635, 1743, 2838 |
| Ppu21I | YACGTR | 1 cut(s) | 1808 |
| PscI | ACATGT | 1 cut(s) | 1576 |
| PshAI | GACNNNNGTC | 2 cut(s) | 1878, 2925 |
| PshBI | ATTAAT | 2 cut(s) | 1620, 3192 |
| PsiI | TTATAA | 2 cut(s) | 875, 1154 |
| Psp6I | CCWGG | 3 cut(s) | 1726, 2791, 2956 |
| PspGI | CCWGG | 3 cut(s) | 1726, 2791, 2956 |
| PspLI | CGTACG | 1 cut(s) | 3125 |
| PspN4I | GGNNCC | 5 cut(s) | 865, 1918, 2879, 3122, 3307 |
| PspPI | GGNCC | 4 cut(s) | 2440, 2877, 2898, 3121 |
| PsuI | RGATCY | 8 cut(s) | 443, 1216, 1303, 1309, 1439, 2041, 2329, 2398 |
| RsaI | GTAC | 6 cut(s) | 357, 1705, 1806, 2574, 2747, 3127 |
| RsaNI | GTAC | 6 cut(s) | 356, 1704, 1805, 2573, 2746, 3126 |
| RseI | CAYNNNNRTG | 3 cut(s) | 114, 507, 2757 |
| SapI | GCTCTTC | 1 cut(s) | 3261 |
| SatI | GCNGC | 7 cut(s) | 120, 204, 323, 614, 2208, 2482, 2786 |
| Sau96I | GGNCC | 4 cut(s) | 2440, 2877, 2898, 3121 |
| SchI | GAGTC | 4 cut(s) | 596, 1636, 1743, 2838 |
| ScrFI | CCNGG | 5 cut(s) | 1536, 1728, 2724, 2793, 2958 |
| SduI | GDGCHC | 1 cut(s) | 1240 |
| SfaNI | GCATC | 7 cut(s) | 263, 1464, 2219, 2363, 2797, 3133, 3242 |
| SfcI | CTRYAG | 1 cut(s) | 2778 |
| SinI | GGWCC | 2 cut(s) | 2877, 3121 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 114, 507, 2757 |
| SmlI | CTYRAG | 4 cut(s) | 604, 1079, 2465, 2675 |
| SmoI | CTYRAG | 4 cut(s) | 604, 1079, 2465, 2675 |
| SpeI | ACTAGT | 1 cut(s) | 280 |
| SsiI | CCGC | 5 cut(s) | 655, 681, 710, 1513, 3061 |
| SspI | AATATT | 5 cut(s) | 330, 947, 1329, 1837, 2347 |
| SspMI | CTAG | 9 cut(s) | 281, 590, 1002, 1307, 1334, 1679, 1694, 2451, 3237 |
| StyD4I | CCNGG | 5 cut(s) | 1534, 1726, 2722, 2791, 2956 |
| TaaI | ACNGT | 6 cut(s) | 319, 1453, 2612, 2779, 2831, 3130 |
| TaiI | ACGT | 4 cut(s) | 654, 1071, 1572, 1810 |
| TaqI | TCGA | 8 cut(s) | 218, 931, 1053, 1372, 1472, 2771, 2919, 3071 |
| TatI | WGTACW | 1 cut(s) | 1703 |
| TscAI | CASTG | 7 cut(s) | 53, 1240, 1245, 1807, 2020, 2368, 3307 |
| TseFI | GTSAC | 5 cut(s) | 1628, 2267, 2336, 2701, 2804 |
| TseI | GCWGC | 7 cut(s) | 119, 203, 322, 613, 2207, 2481, 2785 |
| Tsp45I | GTSAC | 5 cut(s) | 1628, 2267, 2336, 2701, 2804 |
| TspGWI | ACGGA | 1 cut(s) | 3113 |
| TspRI | CASTG | 7 cut(s) | 53, 1240, 1245, 1807, 2020, 2368, 3307 |
| Vha464I | CTTAAG | 1 cut(s) | 2675 |
| VneI | GTGCAC | 1 cut(s) | 1236 |
| VpaK11BI | GGWCC | 2 cut(s) | 2877, 3121 |
| VspI | ATTAAT | 2 cut(s) | 1620, 3192 |
| XapI | RAATTY | 6 cut(s) | 288, 481, 734, 1272, 2183, 2733 |
| XbaI | TCTAGA | 4 cut(s) | 1306, 1678, 1693, 2450 |
| XceI | RCATGY | 3 cut(s) | 1347, 1580, 2926 |
| XmiI | GTMKAC | 2 cut(s) | 497, 790 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1128, 1328, 1962 |
| XspI | CTAG | 9 cut(s) | 281, 590, 1002, 1307, 1334, 1679, 1694, 2451, 3237 |
| ZraI | GACGTC | 2 cut(s) | 652, 1570 |
| Zsp2I | ATGCAT | 3 cut(s) | 256, 302, 1479 |