TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 12 - 188 | 1.5e-53 | TIR domain |
| TIR_2 | PF13676 | 15 - 111 | 4.2e-15 | TIR domain |
| NB-ARC | PF00931 | 206 - 360 | 1.5e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 428 - 498 | 2.1e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 664 - 768 | 8.7e-12 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 688 - 774 | 1.7e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 756 - 818 | 7.6e-08 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 843 - 976 | 4.7e-11 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 854 - 910 | 9.6e-09 | Leucine rich repeat |
| C-JID | PF20160 | 989 - 1129 | 2.1e-18 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 624, 1542 |
| AccB1I | GGYRCC | 1 cut(s) | 2727 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1465 |
| AccBSI | CCGCTC | 1 cut(s) | 680 |
| AccI | GTMKAC | 2 cut(s) | 242, 760 |
| AciI | CCGC | 9 cut(s) | 415, 651, 680, 1483, 2731, 3104, 3354, 3427, 3518 |
| AclWI | GGATC | 3 cut(s) | 134, 320, 3216 |
| AcoI | YGGCCR | 1 cut(s) | 2689 |
| AcuI | CTGAAG | 5 cut(s) | 459, 1110, 1554, 2723, 2927 |
| AcyI | GRCGYC | 2 cut(s) | 621, 1539 |
| AfaI | GTAC | 6 cut(s) | 339, 1161, 1954, 2055, 2990, 3472 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 846, 1465, 3109 |
| AflII | CTTAAG | 1 cut(s) | 574 |
| AflIII | ACRYGT | 2 cut(s) | 1546, 1803 |
| AjnI | CCWGG | 4 cut(s) | 1504, 1975, 2965, 3034 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 546, 578 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1380, 1412 |
| Alw21I | GWGCWC | 2 cut(s) | 8, 17 |
| Alw26I | GTCTC | 2 cut(s) | 732, 1145 |
| AlwI | GGATC | 3 cut(s) | 134, 320, 3216 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2787 |
| Ama87I | CYCGRG | 2 cut(s) | 3157, 3542 |
| AoxI | GGCC | 1 cut(s) | 2689 |
| ApeKI | GCWGC | 4 cut(s) | 185, 304, 583, 3458 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2500, 2532 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1070, 1098, 1298, 1827, 2712 |
| AspLEI | GCGC | 1 cut(s) | 1515 |
| AspS9I | GGNCC | 5 cut(s) | 1740, 3009, 3161, 3358, 3560 |
| AsuC2I | CCSGG | 3 cut(s) | 1487, 1744, 2931 |
| AsuHPI | GGTGA | 5 cut(s) | 12, 374, 1633, 1639, 2454 |
| AvaI | CYCGRG | 2 cut(s) | 3157, 3542 |
| AvaII | GGWCC | 5 cut(s) | 1740, 3009, 3161, 3358, 3560 |
| BaeGI | GKGCMC | 1 cut(s) | 3234 |
| BanI | GGYRCC | 1 cut(s) | 2727 |
| BanII | GRGCYC | 2 cut(s) | 17, 1169 |
| BbsI | GAAGAC | 4 cut(s) | 1441, 1542, 1703, 2246 |
| Bbv12I | GWGCWC | 2 cut(s) | 8, 17 |
| BbvI | GCAGC | 4 cut(s) | 172, 291, 595, 3470 |
| BccI | CCATC | 2 cut(s) | 1265, 2407 |
| BceAI | ACGGC | 1 cut(s) | 3062 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 2138, 2172, 2871, 2905, 3138, 3172 |
| BciT130I | CCWGG | 4 cut(s) | 1506, 1977, 2967, 3036 |
| BciVI | GTATCC | 3 cut(s) | 61, 1758, 3042 |
| BclI | TGATCA | 2 cut(s) | 1359, 3241 |
| BcnI | CCSGG | 3 cut(s) | 1487, 1744, 2931 |
| BcoDI | GTCTC | 2 cut(s) | 732, 1145 |
| BfmI | CTRYAG | 2 cut(s) | 669, 3021 |
| BfrI | CTTAAG | 1 cut(s) | 574 |
| BfuI | GTATCC | 3 cut(s) | 61, 1758, 3042 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1510 |
| BglII | AGATCT | 3 cut(s) | 425, 1186, 2290 |
| BisI | GCNGC | 5 cut(s) | 186, 305, 584, 2731, 3459 |
| BlsI | GCNGC | 5 cut(s) | 187, 306, 585, 2732, 3460 |
| BmcAI | AGTACT | 2 cut(s) | 1161, 3472 |
| Bme1390I | CCNGG | 7 cut(s) | 1487, 1506, 1744, 1977, 2931, 2967, 3036 |
| Bme18I | GGWCC | 5 cut(s) | 1740, 3009, 3161, 3358, 3560 |
| BmeT110I | CYCGRG | 2 cut(s) | 3157, 3542 |
| BmgT120I | GGNCC | 5 cut(s) | 1740, 3009, 3161, 3358, 3560 |
| BmiI | GGNNCC | 7 cut(s) | 835, 1688, 2729, 3010, 3162, 3163, 3359 |
| BmrFI | CCNGG | 7 cut(s) | 1487, 1506, 1744, 1977, 2931, 2967, 3036 |
| BmrI | ACTGGG | 2 cut(s) | 1172, 2604 |
| BmsI | GCATC | 9 cut(s) | 245, 1434, 1995, 2146, 2472, 2612, 3445, 3470, 3529 |
| BmuI | ACTGGG | 2 cut(s) | 1172, 2604 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2127 |
| BpiI | GAAGAC | 4 cut(s) | 1441, 1542, 1703, 2246 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 193, 225, 680, 712, 682, 714 |
| BpmI | CTGGAG | 2 cut(s) | 156, 2988 |
| Bpu10I | CCTNAGC | 1 cut(s) | 144 |
| BpuEI | CTTGAG | 3 cut(s) | 1949, 2248, 3407 |
| BpuMI | CCSGG | 3 cut(s) | 1487, 1744, 2931 |
| BsaAI | YACGTR | 1 cut(s) | 2057 |
| BsaBI | GATNNNNATC | 2 cut(s) | 324, 2295 |
| BsaHI | GRCGYC | 2 cut(s) | 621, 1539 |
| BsaI | GGTCTC | 1 cut(s) | 1145 |
| BsaJI | CCNNGG | 5 cut(s) | 26, 1810, 1975, 1976, 3107 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1605, 1635 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 846, 1465, 3109 |
| Bse118I | RCCGGY | 1 cut(s) | 586 |
| Bse1I | ACTGG | 3 cut(s) | 1167, 1570, 2610 |
| Bse3DI | GCAATG | 1 cut(s) | 2744 |
| Bse8I | GATNNNNATC | 2 cut(s) | 324, 2295 |
| BseBI | CCWGG | 4 cut(s) | 1506, 1977, 2967, 3036 |
| BseDI | CCNNGG | 5 cut(s) | 26, 1810, 1975, 1976, 3107 |
| BseGI | GGATG | 9 cut(s) | 115, 142, 622, 1449, 2399, 2453, 2627, 3331, 3520 |
| BseJI | GATNNNNATC | 2 cut(s) | 324, 2295 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 846, 1465, 3109 |
| BseMI | GCAATG | 1 cut(s) | 2744 |
| BseMII | CTCAG | 6 cut(s) | 135, 468, 1596, 1773, 1888, 2670 |
| BseNI | ACTGG | 3 cut(s) | 1167, 1570, 2610 |
| BseRI | GAGGAG | 2 cut(s) | 15, 3401 |
| BseSI | GKGCMC | 1 cut(s) | 3234 |
| BseXI | GCAGC | 4 cut(s) | 172, 291, 595, 3470 |
| BsgI | GTGCAG | 2 cut(s) | 627, 3576 |
| BshFI | GGCC | 1 cut(s) | 2691 |
| BshNI | GGYRCC | 1 cut(s) | 2727 |
| BsiHKAI | GWGCWC | 2 cut(s) | 8, 17 |
| BsiHKCI | CYCGRG | 2 cut(s) | 3157, 3542 |
| BsiSI | CCGG | 7 cut(s) | 587, 1063, 1486, 1743, 2525, 2750, 2931 |
| BslFI | GGGAC | 1 cut(s) | 3147 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 846, 1465, 3109 |
| BsmAI | GTCTC | 2 cut(s) | 732, 1145 |
| BsmFI | GGGAC | 1 cut(s) | 3147 |
| BsmI | GAATGC | 2 cut(s) | 1070, 1636 |
| BsnI | GGCC | 1 cut(s) | 2691 |
| Bso31I | GGTCTC | 1 cut(s) | 1145 |
| BsoBI | CYCGRG | 2 cut(s) | 3157, 3542 |
| Bsp1286I | GDGCHC | 4 cut(s) | 8, 17, 1169, 3234 |
| Bsp1407I | TGTACA | 1 cut(s) | 1952 |
| Bsp19I | CCATGG | 1 cut(s) | 1810 |
| BspACI | CCGC | 9 cut(s) | 415, 651, 680, 1483, 2731, 3104, 3354, 3427, 3518 |
| BspANI | GGCC | 1 cut(s) | 2691 |
| BspCNI | CTCAG | 6 cut(s) | 136, 467, 1597, 1774, 1887, 2671 |
| BspHI | TCATGA | 1 cut(s) | 826 |
| BspLI | GGNNCC | 7 cut(s) | 835, 1688, 2729, 3010, 3162, 3163, 3359 |
| BspPI | GGATC | 3 cut(s) | 134, 320, 3216 |
| BspQI | GCTCTTC | 1 cut(s) | 22 |
| BspT107I | GGYRCC | 1 cut(s) | 2727 |
| BspTI | CTTAAG | 1 cut(s) | 574 |
| BspTNI | GGTCTC | 1 cut(s) | 1145 |
| BsrBI | CCGCTC | 1 cut(s) | 680 |
| BsrDI | GCAATG | 1 cut(s) | 2744 |
| BsrFI | RCCGGY | 1 cut(s) | 586 |
| BsrGI | TGTACA | 1 cut(s) | 1952 |
| BsrI | ACTGG | 3 cut(s) | 1167, 1570, 2610 |
| BssAI | RCCGGY | 1 cut(s) | 586 |
| BssECI | CCNNGG | 5 cut(s) | 26, 1810, 1975, 1976, 3107 |
| BssNI | GRCGYC | 2 cut(s) | 621, 1539 |
| BssT1I | CCWWGG | 2 cut(s) | 1810, 3107 |
| Bst2UI | CCWGG | 4 cut(s) | 1506, 1977, 2967, 3036 |
| Bst4CI | ACNGT | 7 cut(s) | 1205, 1423, 1867, 2460, 2843, 3022, 3554 |
| Bst6I | CTCTTC | 5 cut(s) | 22, 1053, 1177, 1219, 1281 |
| BstACI | GRCGYC | 2 cut(s) | 621, 1539 |
| BstAFI | CTTAAG | 1 cut(s) | 574 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 182, 1453, 3482 |
| BstAUI | TGTACA | 1 cut(s) | 1952 |
| BstBAI | YACGTR | 1 cut(s) | 2057 |
| BstC8I | GCNNGC | 4 cut(s) | 1511, 2047, 2201, 2735 |
| BstDEI | CTNAG | 8 cut(s) | 144, 454, 1190, 1605, 1782, 1874, 2582, 2679 |
| BstDSI | CCRYGG | 1 cut(s) | 1810 |
| BstEII | GGTNACC | 1 cut(s) | 1082 |
| BstF5I | GGATG | 9 cut(s) | 115, 142, 622, 1449, 2399, 2453, 2627, 3331, 3520 |
| BstHHI | GCGC | 1 cut(s) | 1515 |
| BstMAI | GTCTC | 2 cut(s) | 732, 1145 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 12, 182, 296, 1453, 1510, 1815, 2196, 3074, 3482 |
| BstNI | CCWGG | 4 cut(s) | 1506, 1977, 2967, 3036 |
| BstNSI | RCATGY | 3 cut(s) | 1550, 1807, 2203 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2127 |
| BstPI | GGTNACC | 1 cut(s) | 1082 |
| BstSCI | CCNGG | 7 cut(s) | 1485, 1504, 1742, 1975, 2929, 2965, 3034 |
| BstSFI | CTRYAG | 2 cut(s) | 669, 3021 |
| BstSLI | GKGCMC | 1 cut(s) | 3234 |
| BstV1I | GCAGC | 4 cut(s) | 172, 291, 595, 3470 |
| BstV2I | GAAGAC | 4 cut(s) | 1441, 1542, 1703, 2246 |
| BstX2I | RGATCY | 3 cut(s) | 425, 1186, 2290 |
| BstYI | RGATCY | 3 cut(s) | 425, 1186, 2290 |
| BsuI | GTATCC | 3 cut(s) | 61, 1758, 3042 |
| BsuRI | GGCC | 1 cut(s) | 2691 |
| BtgI | CCRYGG | 1 cut(s) | 1810 |
| BtgZI | GCGATG | 2 cut(s) | 411, 2874 |
| BtsCI | GGATG | 9 cut(s) | 115, 142, 622, 1449, 2399, 2453, 2627, 3331, 3520 |
| BtsI | GCAGTG | 3 cut(s) | 99, 2056, 2269 |
| BtsIMutI | CAGTG | 5 cut(s) | 99, 1210, 2056, 2269, 2617 |
| Cac8I | GCNNGC | 4 cut(s) | 1511, 2047, 2201, 2735 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2787 |
| CciI | TCATGA | 1 cut(s) | 826 |
| CfoI | GCGC | 1 cut(s) | 1515 |
| Cfr10I | RCCGGY | 1 cut(s) | 586 |
| Cfr13I | GGNCC | 5 cut(s) | 1740, 3009, 3161, 3358, 3560 |
| Csp6I | GTAC | 6 cut(s) | 338, 1160, 1953, 2054, 2989, 3471 |
| CviQI | GTAC | 6 cut(s) | 338, 1160, 1953, 2054, 2989, 3471 |
| DdeI | CTNAG | 8 cut(s) | 144, 454, 1190, 1605, 1782, 1874, 2582, 2679 |
| DraI | TTTAAA | 5 cut(s) | 912, 1912, 3256, 3304, 3535 |
| EaeI | YGGCCR | 1 cut(s) | 2689 |
| Eam1104I | CTCTTC | 5 cut(s) | 22, 1053, 1177, 1219, 1281 |
| EarI | CTCTTC | 5 cut(s) | 22, 1053, 1177, 1219, 1281 |
| EciI | GGCGGA | 1 cut(s) | 1472 |
| Ecl136II | GAGCTC | 1 cut(s) | 15 |
| Eco130I | CCWWGG | 2 cut(s) | 1810, 3107 |
| Eco24I | GRGCYC | 2 cut(s) | 17, 1169 |
| Eco31I | GGTCTC | 1 cut(s) | 1145 |
| Eco32I | GATATC | 1 cut(s) | 3274 |
| Eco47I | GGWCC | 5 cut(s) | 1740, 3009, 3161, 3358, 3560 |
| Eco53kI | GAGCTC | 1 cut(s) | 15 |
| Eco57I | CTGAAG | 5 cut(s) | 459, 1110, 1554, 2723, 2927 |
| Eco88I | CYCGRG | 2 cut(s) | 3157, 3542 |
| Eco91I | GGTNACC | 1 cut(s) | 1082 |
| EcoICRI | GAGCTC | 1 cut(s) | 15 |
| EcoO109I | RGGNCCY | 3 cut(s) | 3009, 3161, 3560 |
| EcoO65I | GGTNACC | 1 cut(s) | 1082 |
| EcoRI | GAATTC | 3 cut(s) | 270, 463, 3152 |
| EcoRII | CCWGG | 4 cut(s) | 1504, 1975, 2965, 3034 |
| EcoRV | GATATC | 1 cut(s) | 3274 |
| EcoT14I | CCWWGG | 2 cut(s) | 1810, 3107 |
| EcoT22I | ATGCAT | 1 cut(s) | 238 |
| EcoT38I | GRGCYC | 2 cut(s) | 17, 1169 |
| ErhI | CCWWGG | 2 cut(s) | 1810, 3107 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1086, 1118, 3416, 3448 |
| FaqI | GGGAC | 1 cut(s) | 3147 |
| FauI | CCCGC | 4 cut(s) | 644, 3111, 3347, 3420 |
| FbaI | TGATCA | 2 cut(s) | 1359, 3241 |
| FblI | GTMKAC | 2 cut(s) | 242, 760 |
| Fnu4HI | GCNGC | 5 cut(s) | 186, 305, 584, 2731, 3459 |
| FokI | GGATG | 9 cut(s) | 122, 149, 629, 1456, 2386, 2460, 2634, 3338, 3507 |
| FriOI | GRGCYC | 2 cut(s) | 17, 1169 |
| Fsp4HI | GCNGC | 5 cut(s) | 186, 305, 584, 2731, 3459 |
| GlaI | GCGC | 1 cut(s) | 1514 |
| GluI | GCNGC | 5 cut(s) | 186, 305, 584, 2731, 3459 |
| GsuI | CTGGAG | 2 cut(s) | 156, 2988 |
| HaeIII | GGCC | 1 cut(s) | 2691 |
| HapII | CCGG | 7 cut(s) | 587, 1063, 1486, 1743, 2525, 2750, 2931 |
| HhaI | GCGC | 1 cut(s) | 1515 |
| Hin1I | GRCGYC | 2 cut(s) | 621, 1539 |
| Hin6I | GCGC | 1 cut(s) | 1513 |
| HinP1I | GCGC | 1 cut(s) | 1513 |
| HincII | GTYRAC | 6 cut(s) | 243, 1897, 1972, 2839, 3138, 3197 |
| HindII | GTYRAC | 6 cut(s) | 243, 1897, 1972, 2839, 3138, 3197 |
| HindIII | AAGCTT | 3 cut(s) | 2315, 2363, 2735 |
| HpaI | GTTAAC | 1 cut(s) | 2839 |
| HpaII | CCGG | 7 cut(s) | 587, 1063, 1486, 1743, 2525, 2750, 2931 |
| HphI | GGTGA | 5 cut(s) | 12, 374, 1633, 1639, 2454 |
| Hpy188I | TCNGA | 6 cut(s) | 269, 626, 820, 1534, 2602, 2742 |
| Hpy99I | CGWCG | 1 cut(s) | 244 |
| HpyAV | CCTTC | 8 cut(s) | 731, 824, 833, 1012, 1577, 1940, 2201, 2571 |
| HpyCH4III | ACNGT | 7 cut(s) | 1205, 1423, 1867, 2460, 2843, 3022, 3554 |
| HpyCH4IV | ACGT | 3 cut(s) | 621, 1539, 2056 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 12, 182, 296, 1453, 1510, 1815, 2196, 3074, 3482 |
| HpyF3I | CTNAG | 8 cut(s) | 144, 454, 1190, 1605, 1782, 1874, 2582, 2679 |
| HpySE526I | ACGT | 3 cut(s) | 621, 1539, 2056 |
| Hsp92I | GRCGYC | 2 cut(s) | 621, 1539 |
| HspAI | GCGC | 1 cut(s) | 1513 |
| KflI | GGGWCCC | 1 cut(s) | 3161 |
| Ksp22I | TGATCA | 2 cut(s) | 1359, 3241 |
| KspAI | GTTAAC | 1 cut(s) | 2839 |
| LguI | GCTCTTC | 1 cut(s) | 22 |
| LmnI | GCTCC | 5 cut(s) | 833, 1461, 2752, 2968, 3388 |
| Lsp1109I | GCAGC | 4 cut(s) | 172, 291, 595, 3470 |
| LweI | GCATC | 9 cut(s) | 245, 1434, 1995, 2146, 2472, 2612, 3445, 3470, 3529 |
| MaeII | ACGT | 3 cut(s) | 621, 1539, 2056 |
| MaeIII | GTNAC | 9 cut(s) | 860, 1082, 1232, 1345, 2460, 2516, 2585, 2800, 3566 |
| MbiI | CCGCTC | 1 cut(s) | 680 |
| MfeI | CAATTG | 1 cut(s) | 3477 |
| MflI | RGATCY | 3 cut(s) | 425, 1186, 2290 |
| MhlI | GDGCHC | 4 cut(s) | 8, 17, 1169, 3234 |
| MlyI | GAGTC | 3 cut(s) | 1592, 3081, 3534 |
| MmeI | TCCRAC | 4 cut(s) | 544, 1815, 2783, 3186 |
| Mph1103I | ATGCAT | 1 cut(s) | 238 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1070, 1098, 1298, 1827, 2712 |
| MslI | CAYNNNNRTG | 2 cut(s) | 3000, 3444 |
| MspCI | CTTAAG | 1 cut(s) | 574 |
| MspI | CCGG | 7 cut(s) | 587, 1063, 1486, 1743, 2525, 2750, 2931 |
| MspR9I | CCNGG | 7 cut(s) | 1487, 1506, 1744, 1977, 2931, 2967, 3036 |
| MunI | CAATTG | 1 cut(s) | 3477 |
| Mva1269I | GAATGC | 2 cut(s) | 1070, 1636 |
| MvaI | CCWGG | 4 cut(s) | 1506, 1977, 2967, 3036 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 12, 182, 296, 1453, 1510, 1815, 2196, 3074, 3482 |
| NciI | CCSGG | 3 cut(s) | 1487, 1744, 2931 |
| NcoI | CCATGG | 1 cut(s) | 1810 |
| NlaIV | GGNNCC | 7 cut(s) | 835, 1688, 2729, 3010, 3162, 3163, 3359 |
| NmuCI | GTSAC | 6 cut(s) | 860, 2460, 2516, 2585, 2800, 3566 |
| NsiI | ATGCAT | 1 cut(s) | 238 |
| NspI | RCATGY | 3 cut(s) | 1550, 1807, 2203 |
| PaeI | GCATGC | 1 cut(s) | 2203 |
| PaeR7I | CTCGAG | 1 cut(s) | 3542 |
| PagI | TCATGA | 1 cut(s) | 826 |
| PasI | CCCWGGG | 1 cut(s) | 1976 |
| PciI | ACATGT | 2 cut(s) | 1546, 1803 |
| PciSI | GCTCTTC | 1 cut(s) | 22 |
| PctI | GAATGC | 2 cut(s) | 1070, 1636 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1070, 1098, 1298, 1827, 2712 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1465 |
| PfoI | TCCNGGA | 2 cut(s) | 2929, 2965 |
| PkrI | GCNGC | 5 cut(s) | 187, 306, 585, 2732, 3460 |
| PleI | GAGTC | 3 cut(s) | 1592, 3081, 3534 |
| PpsI | GAGTC | 3 cut(s) | 1592, 3081, 3534 |
| Ppu21I | YACGTR | 1 cut(s) | 2057 |
| PpuMI | RGGWCCY | 3 cut(s) | 3009, 3161, 3560 |
| PscI | ACATGT | 2 cut(s) | 1546, 1803 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2127 |
| Psp124BI | GAGCTC | 1 cut(s) | 17 |
| Psp5II | RGGWCCY | 3 cut(s) | 3009, 3161, 3560 |
| Psp6I | CCWGG | 4 cut(s) | 1504, 1975, 2965, 3034 |
| PspEI | GGTNACC | 1 cut(s) | 1082 |
| PspGI | CCWGG | 4 cut(s) | 1504, 1975, 2965, 3034 |
| PspN4I | GGNNCC | 7 cut(s) | 835, 1688, 2729, 3010, 3162, 3163, 3359 |
| PspPI | GGNCC | 5 cut(s) | 1740, 3009, 3161, 3358, 3560 |
| PspPPI | RGGWCCY | 3 cut(s) | 3009, 3161, 3560 |
| PspXI | VCTCGAGB | 1 cut(s) | 3542 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2787 |
| PsuI | RGATCY | 3 cut(s) | 425, 1186, 2290 |
| RsaI | GTAC | 6 cut(s) | 339, 1161, 1954, 2055, 2990, 3472 |
| RsaNI | GTAC | 6 cut(s) | 338, 1160, 1953, 2054, 2989, 3471 |
| RseI | CAYNNNNRTG | 2 cut(s) | 3000, 3444 |
| SacI | GAGCTC | 1 cut(s) | 17 |
| SalI | GTCGAC | 1 cut(s) | 241 |
| SapI | GCTCTTC | 1 cut(s) | 22 |
| SatI | GCNGC | 5 cut(s) | 186, 305, 584, 2731, 3459 |
| Sau96I | GGNCC | 5 cut(s) | 1740, 3009, 3161, 3358, 3560 |
| ScaI | AGTACT | 2 cut(s) | 1161, 3472 |
| SchI | GAGTC | 3 cut(s) | 1592, 3081, 3534 |
| ScrFI | CCNGG | 7 cut(s) | 1487, 1506, 1744, 1977, 2931, 2967, 3036 |
| SduI | GDGCHC | 4 cut(s) | 8, 17, 1169, 3234 |
| SfaNI | GCATC | 9 cut(s) | 245, 1434, 1995, 2146, 2472, 2612, 3445, 3470, 3529 |
| SfcI | CTRYAG | 2 cut(s) | 669, 3021 |
| Sfr274I | CTCGAG | 1 cut(s) | 3542 |
| SinI | GGWCC | 5 cut(s) | 1740, 3009, 3161, 3358, 3560 |
| SlaI | CTCGAG | 1 cut(s) | 3542 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 3000, 3444 |
| SmlI | CTYRAG | 5 cut(s) | 574, 1928, 2227, 3422, 3542 |
| SmoI | CTYRAG | 5 cut(s) | 574, 1928, 2227, 3422, 3542 |
| SphI | GCATGC | 1 cut(s) | 2203 |
| SsiI | CCGC | 9 cut(s) | 415, 651, 680, 1483, 2731, 3104, 3354, 3427, 3518 |
| SspI | AATATT | 1 cut(s) | 1299 |
| SstI | GAGCTC | 1 cut(s) | 17 |
| StyD4I | CCNGG | 7 cut(s) | 1485, 1504, 1742, 1975, 2929, 2965, 3034 |
| StyI | CCWWGG | 2 cut(s) | 1810, 3107 |
| TaaI | ACNGT | 7 cut(s) | 1205, 1423, 1867, 2460, 2843, 3022, 3554 |
| TaiI | ACGT | 3 cut(s) | 624, 1542, 2059 |
| TaqI | TCGA | 9 cut(s) | 73, 200, 242, 993, 1248, 1342, 1646, 2148, 3543 |
| TaqII | GACCGA | 1 cut(s) | 3298 |
| TatI | WGTACW | 3 cut(s) | 1159, 1952, 3470 |
| TauI | GCSGC | 1 cut(s) | 2733 |
| TscAI | CASTG | 5 cut(s) | 106, 1210, 2056, 2269, 2617 |
| TseFI | GTSAC | 6 cut(s) | 860, 2460, 2516, 2585, 2800, 3566 |
| TseI | GCWGC | 4 cut(s) | 185, 304, 583, 3458 |
| Tsp45I | GTSAC | 6 cut(s) | 860, 2460, 2516, 2585, 2800, 3566 |
| TspGWI | ACGGA | 3 cut(s) | 1741, 1821, 3350 |
| TspRI | CASTG | 5 cut(s) | 106, 1210, 2056, 2269, 2617 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1465 |
| Vha464I | CTTAAG | 1 cut(s) | 574 |
| VpaK11BI | GGWCC | 5 cut(s) | 1740, 3009, 3161, 3358, 3560 |
| XbaI | TCTAGA | 2 cut(s) | 1276, 2699 |
| XceI | RCATGY | 3 cut(s) | 1550, 1807, 2203 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 938, 3105 |
| XhoI | CTCGAG | 1 cut(s) | 3542 |
| XmiI | GTMKAC | 2 cut(s) | 242, 760 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1070, 1098, 1298, 1827, 2712 |
| ZraI | GACGTC | 2 cut(s) | 622, 1540 |
| ZrmI | AGTACT | 2 cut(s) | 1161, 3472 |
| Zsp2I | ATGCAT | 1 cut(s) | 238 |