TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 16 - 183 | 2.9e-52 | TIR domain |
| TIR_2 | PF13676 | 19 - 115 | 1.4e-13 | TIR domain |
| NB-ARC | PF00931 | 199 - 368 | 2.5e-25 | NB-ARC domain |
| NACHT | PF05729 | 220 - 361 | 1.8e-06 | NACHT domain |
| WHD_ROQ1 | PF23282 | 436 - 507 | 1e-13 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 697 - 874 | 4.1e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 789 - 864 | 7.6e-09 | Leucine-rich repeat region |
| C-JID | PF20160 | 925 - 1056 | 3.9e-09 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2267 |
| AccI | GTMKAC | 2 cut(s) | 1471, 2065 |
| AccIII | TCCGGA | 1 cut(s) | 184 |
| AciI | CCGC | 6 cut(s) | 85, 124, 221, 374, 893, 2725 |
| AclI | AACGTT | 1 cut(s) | 846 |
| AclWI | GGATC | 4 cut(s) | 146, 927, 1987, 2927 |
| AcoI | YGGCCR | 1 cut(s) | 456 |
| AcsI | RAATTY | 9 cut(s) | 1182, 1225, 1320, 1394, 2028, 2035, 2141, 2787, 3095 |
| AcuI | CTGAAG | 2 cut(s) | 52, 1706 |
| AdeI | CACNNNGTG | 2 cut(s) | 1025, 2924 |
| AfaI | GTAC | 8 cut(s) | 245, 528, 1202, 1278, 1942, 1978, 2635, 3155 |
| AfeI | AGCGCT | 1 cut(s) | 2718 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 2475, 3061 |
| AflII | CTTAAG | 1 cut(s) | 2473 |
| AflIII | ACRYGT | 2 cut(s) | 54, 1362 |
| AgeI | ACCGGT | 1 cut(s) | 26 |
| AhlI | ACTAGT | 1 cut(s) | 700 |
| AjiI | CACGTC | 1 cut(s) | 55 |
| AjnI | CCWGG | 3 cut(s) | 212, 1531, 2776 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 387, 419, 2828, 2860 |
| Alw21I | GWGCWC | 5 cut(s) | 8, 1080, 2890, 2947, 3151 |
| Alw26I | GTCTC | 7 cut(s) | 507, 557, 951, 2014, 2037, 2814, 3001 |
| Alw44I | GTGCAC | 1 cut(s) | 3147 |
| AlwI | GGATC | 4 cut(s) | 146, 927, 1987, 2927 |
| Aor13HI | TCCGGA | 1 cut(s) | 184 |
| Aor51HI | AGCGCT | 1 cut(s) | 2718 |
| AoxI | GGCC | 4 cut(s) | 456, 1662, 1723, 3141 |
| ApaI | GGGCCC | 1 cut(s) | 3145 |
| ApaLI | GTGCAC | 1 cut(s) | 3147 |
| ApeKI | GCWGC | 7 cut(s) | 121, 366, 1690, 2115, 2275, 2299, 2879 |
| ApoI | RAATTY | 9 cut(s) | 1182, 1225, 1320, 1394, 2028, 2035, 2141, 2787, 3095 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2013, 2045 |
| AseI | ATTAAT | 1 cut(s) | 2553 |
| AsiGI | ACCGGT | 1 cut(s) | 26 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 831, 1506, 2387, 3208 |
| AspLEI | GCGC | 3 cut(s) | 77, 2719, 3046 |
| AspS9I | GGNCC | 5 cut(s) | 1724, 1923, 3064, 3141, 3142 |
| AsuC2I | CCSGG | 1 cut(s) | 2988 |
| AsuHPI | GGTGA | 6 cut(s) | 1841, 2251, 2839, 3017, 3139, 3254 |
| AsuII | TTCGAA | 1 cut(s) | 3093 |
| AvaII | GGWCC | 2 cut(s) | 1923, 3064 |
| BaeGI | GKGCMC | 2 cut(s) | 3145, 3151 |
| BalI | TGGCCA | 1 cut(s) | 458 |
| BanII | GRGCYC | 2 cut(s) | 1080, 3145 |
| BbsI | GAAGAC | 2 cut(s) | 1055, 1157 |
| Bbv12I | GWGCWC | 5 cut(s) | 8, 1080, 2890, 2947, 3151 |
| BbvI | GCAGC | 7 cut(s) | 133, 378, 1677, 2102, 2286, 2287, 2866 |
| BccI | CCATC | 6 cut(s) | 661, 1289, 1303, 2004, 2008, 2668 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 2059, 2093 |
| BciT130I | CCWGG | 3 cut(s) | 214, 1533, 2778 |
| BciVI | GTATCC | 2 cut(s) | 586, 1782 |
| BclI | TGATCA | 2 cut(s) | 1846, 3177 |
| BcnI | CCSGG | 1 cut(s) | 2988 |
| BcoDI | GTCTC | 7 cut(s) | 507, 557, 951, 2014, 2037, 2814, 3001 |
| BcuI | ACTAGT | 1 cut(s) | 700 |
| BfmI | CTRYAG | 3 cut(s) | 791, 2300, 3306 |
| BfoI | RGCGCY | 1 cut(s) | 2720 |
| BfrI | CTTAAG | 1 cut(s) | 2473 |
| BfuI | GTATCC | 2 cut(s) | 586, 1782 |
| BisI | GCNGC | 8 cut(s) | 122, 125, 367, 1691, 2116, 2276, 2300, 2880 |
| BlsI | GCNGC | 8 cut(s) | 123, 126, 368, 1692, 2117, 2277, 2301, 2881 |
| BmcAI | AGTACT | 1 cut(s) | 1278 |
| Bme1390I | CCNGG | 4 cut(s) | 214, 1533, 2778, 2988 |
| Bme18I | GGWCC | 2 cut(s) | 1923, 3064 |
| BmgBI | CACGTC | 1 cut(s) | 55 |
| BmgT120I | GGNCC | 5 cut(s) | 1724, 1923, 3064, 3141, 3142 |
| BmiI | GGNNCC | 7 cut(s) | 339, 568, 1726, 1925, 3066, 3142, 3143 |
| BmrFI | CCNGG | 4 cut(s) | 214, 1533, 2778, 2988 |
| BmsI | GCATC | 7 cut(s) | 430, 553, 747, 1207, 1633, 2839, 3107 |
| BpiI | GAAGAC | 2 cut(s) | 1055, 1157 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 701, 733, 1652, 1684 |
| BpmI | CTGGAG | 3 cut(s) | 553, 623, 1179 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1171, 2611 |
| Bpu14I | TTCGAA | 1 cut(s) | 3093 |
| BpuEI | CTTGAG | 6 cut(s) | 1094, 1679, 1894, 2000, 2753, 2886 |
| BpuMI | CCSGG | 1 cut(s) | 2988 |
| Bsa29I | ATCGAT | 1 cut(s) | 1893 |
| BsaAI | YACGTR | 1 cut(s) | 258 |
| BsaBI | GATNNNNATC | 2 cut(s) | 918, 2931 |
| BsaJI | CCNNGG | 2 cut(s) | 41, 775 |
| BsaWI | WCCGGW | 4 cut(s) | 26, 184, 1804, 2596 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1927, 1957, 2811, 2841 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 2475, 3061 |
| Bse118I | RCCGGY | 1 cut(s) | 26 |
| Bse1I | ACTGG | 3 cut(s) | 939, 965, 2764 |
| Bse3DI | GCAATG | 4 cut(s) | 195, 1232, 2004, 2009 |
| Bse8I | GATNNNNATC | 2 cut(s) | 918, 2931 |
| BseAI | TCCGGA | 1 cut(s) | 184 |
| BseBI | CCWGG | 3 cut(s) | 214, 1533, 2778 |
| BseCI | ATCGAT | 1 cut(s) | 1893 |
| BseDI | CCNNGG | 2 cut(s) | 41, 775 |
| BseGI | GGATG | 9 cut(s) | 544, 672, 1502, 1813, 1996, 2000, 2854, 2970, 3235 |
| BseJI | GATNNNNATC | 2 cut(s) | 918, 2931 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 2475, 3061 |
| BseMI | GCAATG | 4 cut(s) | 195, 1232, 2004, 2009 |
| BseMII | CTCAG | 3 cut(s) | 585, 2503, 2823 |
| BseNI | ACTGG | 3 cut(s) | 939, 965, 2764 |
| BseSI | GKGCMC | 2 cut(s) | 3145, 3151 |
| BseXI | GCAGC | 7 cut(s) | 133, 378, 1677, 2102, 2286, 2287, 2866 |
| BsgI | GTGCAG | 1 cut(s) | 2901 |
| Bsh1285I | CGRYCG | 2 cut(s) | 225, 1261 |
| BshFI | GGCC | 4 cut(s) | 458, 1664, 1725, 3143 |
| BshTI | ACCGGT | 1 cut(s) | 26 |
| BshVI | ATCGAT | 1 cut(s) | 1893 |
| BsiEI | CGRYCG | 2 cut(s) | 225, 1261 |
| BsiHKAI | GWGCWC | 5 cut(s) | 8, 1080, 2890, 2947, 3151 |
| BsiSI | CCGG | 5 cut(s) | 27, 185, 1805, 2597, 2987 |
| BslFI | GGGAC | 1 cut(s) | 161 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 2475, 3061 |
| BsmAI | GTCTC | 7 cut(s) | 507, 557, 951, 2014, 2037, 2814, 3001 |
| BsmFI | GGGAC | 1 cut(s) | 161 |
| BsmI | GAATGC | 3 cut(s) | 296, 1401, 2523 |
| BsnI | GGCC | 4 cut(s) | 458, 1664, 1725, 3143 |
| Bsp119I | TTCGAA | 1 cut(s) | 3093 |
| Bsp120I | GGGCCC | 1 cut(s) | 3141 |
| Bsp1286I | GDGCHC | 6 cut(s) | 8, 1080, 2890, 2947, 3145, 3151 |
| Bsp13I | TCCGGA | 1 cut(s) | 184 |
| Bsp1407I | TGTACA | 1 cut(s) | 1976 |
| Bsp19I | CCATGG | 2 cut(s) | 41, 775 |
| BspACI | CCGC | 6 cut(s) | 85, 124, 221, 374, 893, 2725 |
| BspANI | GGCC | 4 cut(s) | 458, 1664, 1725, 3143 |
| BspCNI | CTCAG | 3 cut(s) | 584, 2502, 2824 |
| BspDI | ATCGAT | 1 cut(s) | 1893 |
| BspEI | TCCGGA | 1 cut(s) | 184 |
| BspHI | TCATGA | 1 cut(s) | 135 |
| BspLI | GGNNCC | 7 cut(s) | 339, 568, 1726, 1925, 3066, 3142, 3143 |
| BspMAI | CTGCAG | 2 cut(s) | 2304, 3310 |
| BspPI | GGATC | 4 cut(s) | 146, 927, 1987, 2927 |
| BspQI | GCTCTTC | 3 cut(s) | 1521, 2976, 3165 |
| BspT104I | TTCGAA | 1 cut(s) | 3093 |
| BspTI | CTTAAG | 1 cut(s) | 2473 |
| BsrDI | GCAATG | 4 cut(s) | 195, 1232, 2004, 2009 |
| BsrFI | RCCGGY | 1 cut(s) | 26 |
| BsrGI | TGTACA | 1 cut(s) | 1976 |
| BsrI | ACTGG | 3 cut(s) | 939, 965, 2764 |
| BssAI | RCCGGY | 1 cut(s) | 26 |
| BssECI | CCNNGG | 2 cut(s) | 41, 775 |
| BssNAI | GTATAC | 1 cut(s) | 1472 |
| BssT1I | CCWWGG | 2 cut(s) | 41, 775 |
| Bst1107I | GTATAC | 1 cut(s) | 1472 |
| Bst2UI | CCWGG | 3 cut(s) | 214, 1533, 2778 |
| Bst4CI | ACNGT | 7 cut(s) | 175, 276, 1134, 2423, 2759, 2924, 3153 |
| Bst6I | CTCTTC | 6 cut(s) | 294, 390, 1258, 1521, 2976, 3165 |
| BstAFI | CTTAAG | 1 cut(s) | 2473 |
| BstAUI | TGTACA | 1 cut(s) | 1976 |
| BstBAI | YACGTR | 1 cut(s) | 258 |
| BstBI | TTCGAA | 1 cut(s) | 3093 |
| BstC8I | GCNNGC | 3 cut(s) | 266, 2521, 2622 |
| BstDSI | CCRYGG | 2 cut(s) | 41, 775 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2473 |
| BstF5I | GGATG | 9 cut(s) | 544, 672, 1502, 1813, 1996, 2000, 2854, 2970, 3235 |
| BstH2I | RGCGCY | 1 cut(s) | 2720 |
| BstHHI | GCGC | 3 cut(s) | 77, 2719, 3046 |
| BstMAI | GTCTC | 7 cut(s) | 507, 557, 951, 2014, 2037, 2814, 3001 |
| BstMCI | CGRYCG | 2 cut(s) | 225, 1261 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 72, 2539, 2621, 2885 |
| BstNI | CCWGG | 3 cut(s) | 214, 1533, 2778 |
| BstNSI | RCATGY | 4 cut(s) | 527, 1010, 2886, 3267 |
| BstSCI | CCNGG | 4 cut(s) | 212, 1531, 2776, 2986 |
| BstSFI | CTRYAG | 3 cut(s) | 791, 2300, 3306 |
| BstSLI | GKGCMC | 2 cut(s) | 3145, 3151 |
| BstV1I | GCAGC | 7 cut(s) | 133, 378, 1677, 2102, 2286, 2287, 2866 |
| BstV2I | GAAGAC | 2 cut(s) | 1055, 1157 |
| BstX2I | RGATCY | 2 cut(s) | 1992, 2932 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1221 |
| BstYI | RGATCY | 2 cut(s) | 1992, 2932 |
| BstZ17I | GTATAC | 1 cut(s) | 1472 |
| Bsu15I | ATCGAT | 1 cut(s) | 1893 |
| BsuI | GTATCC | 2 cut(s) | 586, 1782 |
| BsuRI | GGCC | 4 cut(s) | 458, 1664, 1725, 3143 |
| BsuTUI | ATCGAT | 1 cut(s) | 1893 |
| BtgI | CCRYGG | 2 cut(s) | 41, 775 |
| BtrI | CACGTC | 1 cut(s) | 55 |
| BtsCI | GGATG | 9 cut(s) | 544, 672, 1502, 1813, 1996, 2000, 2854, 2970, 3235 |
| BtsIMutI | CAGTG | 2 cut(s) | 2966, 3149 |
| Cac8I | GCNNGC | 3 cut(s) | 266, 2521, 2622 |
| CciI | TCATGA | 1 cut(s) | 135 |
| CfoI | GCGC | 3 cut(s) | 77, 2719, 3046 |
| Cfr10I | RCCGGY | 1 cut(s) | 26 |
| Cfr13I | GGNCC | 5 cut(s) | 1724, 1923, 3064, 3141, 3142 |
| ClaI | ATCGAT | 1 cut(s) | 1893 |
| CseI | GACGC | 1 cut(s) | 1548 |
| Csp6I | GTAC | 8 cut(s) | 244, 527, 1201, 1277, 1941, 1977, 2634, 3154 |
| CspAI | ACCGGT | 1 cut(s) | 26 |
| CviQI | GTAC | 8 cut(s) | 244, 527, 1201, 1277, 1941, 1977, 2634, 3154 |
| DraI | TTTAAA | 1 cut(s) | 1710 |
| DraIII | CACNNNGTG | 2 cut(s) | 1025, 2924 |
| EaeI | YGGCCR | 1 cut(s) | 456 |
| Eam1104I | CTCTTC | 6 cut(s) | 294, 390, 1258, 1521, 2976, 3165 |
| EarI | CTCTTC | 6 cut(s) | 294, 390, 1258, 1521, 2976, 3165 |
| Ecl136II | GAGCTC | 1 cut(s) | 1078 |
| Eco130I | CCWWGG | 2 cut(s) | 41, 775 |
| Eco147I | AGGCCT | 1 cut(s) | 1664 |
| Eco24I | GRGCYC | 2 cut(s) | 1080, 3145 |
| Eco47I | GGWCC | 2 cut(s) | 1923, 3064 |
| Eco47III | AGCGCT | 1 cut(s) | 2718 |
| Eco53kI | GAGCTC | 1 cut(s) | 1078 |
| Eco57I | CTGAAG | 2 cut(s) | 52, 1706 |
| EcoICRI | GAGCTC | 1 cut(s) | 1078 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2473 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1923, 3064, 3141 |
| EcoRI | GAATTC | 2 cut(s) | 1225, 3095 |
| EcoRII | CCWGG | 3 cut(s) | 212, 1531, 2776 |
| EcoT14I | CCWWGG | 2 cut(s) | 41, 775 |
| EcoT22I | ATGCAT | 3 cut(s) | 296, 1222, 3122 |
| EcoT38I | GRGCYC | 2 cut(s) | 1080, 3145 |
| ErhI | CCWWGG | 2 cut(s) | 41, 775 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 882, 914, 3196, 3228 |
| FaqI | GGGAC | 1 cut(s) | 161 |
| FauI | CCCGC | 1 cut(s) | 92 |
| FauNDI | CATATG | 2 cut(s) | 1039, 2082 |
| FbaI | TGATCA | 2 cut(s) | 1846, 3177 |
| FblI | GTMKAC | 2 cut(s) | 1471, 2065 |
| Fnu4HI | GCNGC | 8 cut(s) | 122, 125, 367, 1691, 2116, 2276, 2300, 2880 |
| FokI | GGATG | 9 cut(s) | 531, 679, 1509, 1820, 1983, 1987, 2861, 2977, 3242 |
| FriOI | GRGCYC | 2 cut(s) | 1080, 3145 |
| Fsp4HI | GCNGC | 8 cut(s) | 122, 125, 367, 1691, 2116, 2276, 2300, 2880 |
| GlaI | GCGC | 3 cut(s) | 76, 2718, 3045 |
| GluI | GCNGC | 8 cut(s) | 122, 125, 367, 1691, 2116, 2276, 2300, 2880 |
| GsuI | CTGGAG | 3 cut(s) | 553, 623, 1179 |
| HaeII | RGCGCY | 1 cut(s) | 2720 |
| HaeIII | GGCC | 4 cut(s) | 458, 1664, 1725, 3143 |
| HapII | CCGG | 5 cut(s) | 27, 185, 1805, 2597, 2987 |
| HgaI | GACGC | 1 cut(s) | 1548 |
| HhaI | GCGC | 3 cut(s) | 77, 2719, 3046 |
| Hin6I | GCGC | 3 cut(s) | 75, 2717, 3044 |
| HinP1I | GCGC | 3 cut(s) | 75, 2717, 3044 |
| HindIII | AAGCTT | 3 cut(s) | 1712, 2243, 2540 |
| HpaII | CCGG | 5 cut(s) | 27, 185, 1805, 2597, 2987 |
| HphI | GGTGA | 6 cut(s) | 1841, 2251, 2839, 3017, 3139, 3254 |
| Hpy166II | GTNNAC | 5 cut(s) | 1472, 1682, 1912, 2066, 3149 |
| Hpy8I | GTNNAC | 5 cut(s) | 1472, 1682, 1912, 2066, 3149 |
| Hpy99I | CGWCG | 2 cut(s) | 56, 3296 |
| HpyCH4III | ACNGT | 7 cut(s) | 175, 276, 1134, 2423, 2759, 2924, 3153 |
| HpyCH4IV | ACGT | 5 cut(s) | 54, 257, 846, 1362, 3083 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 72, 2539, 2621, 2885 |
| HpySE526I | ACGT | 5 cut(s) | 54, 257, 846, 1362, 3083 |
| HspAI | GCGC | 3 cut(s) | 75, 2717, 3044 |
| Kpn2I | TCCGGA | 1 cut(s) | 184 |
| Ksp22I | TGATCA | 2 cut(s) | 1846, 3177 |
| LguI | GCTCTTC | 3 cut(s) | 1521, 2976, 3165 |
| LmnI | GCTCC | 3 cut(s) | 187, 534, 2478 |
| Lsp1109I | GCAGC | 7 cut(s) | 133, 378, 1677, 2102, 2286, 2287, 2866 |
| LweI | GCATC | 7 cut(s) | 430, 553, 747, 1207, 1633, 2839, 3107 |
| MaeII | ACGT | 5 cut(s) | 54, 257, 846, 1362, 3083 |
| MaeIII | GTNAC | 9 cut(s) | 1015, 1355, 1838, 1901, 2640, 2737, 2827, 3079, 3242 |
| MfeI | CAATTG | 3 cut(s) | 2214, 2582, 2629 |
| MflI | RGATCY | 2 cut(s) | 1992, 2932 |
| MhlI | GDGCHC | 6 cut(s) | 8, 1080, 2890, 2947, 3145, 3151 |
| MlsI | TGGCCA | 1 cut(s) | 458 |
| MluNI | TGGCCA | 1 cut(s) | 458 |
| MlyI | GAGTC | 7 cut(s) | 1526, 1648, 2016, 2071, 2242, 2356, 2816 |
| MmeI | TCCRAC | 1 cut(s) | 1067 |
| Mox20I | TGGCCA | 1 cut(s) | 458 |
| Mph1103I | ATGCAT | 3 cut(s) | 296, 1222, 3122 |
| MroI | TCCGGA | 1 cut(s) | 184 |
| MroXI | GAANNNNTTC | 4 cut(s) | 831, 1506, 2387, 3208 |
| MscI | TGGCCA | 1 cut(s) | 458 |
| MseI | TTAA | 9 cut(s) | 446, 1179, 1442, 1709, 2058, 2408, 2474, 2553, 3252 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2925, 3125 |
| Msp20I | TGGCCA | 1 cut(s) | 458 |
| MspA1I | CMGCKG | 1 cut(s) | 124 |
| MspCI | CTTAAG | 1 cut(s) | 2473 |
| MspI | CCGG | 5 cut(s) | 27, 185, 1805, 2597, 2987 |
| MspR9I | CCNGG | 4 cut(s) | 214, 1533, 2778, 2988 |
| MunI | CAATTG | 3 cut(s) | 2214, 2582, 2629 |
| Mva1269I | GAATGC | 3 cut(s) | 296, 1401, 2523 |
| MvaI | CCWGG | 3 cut(s) | 214, 1533, 2778 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 72, 2539, 2621, 2885 |
| NciI | CCSGG | 1 cut(s) | 2988 |
| NcoI | CCATGG | 2 cut(s) | 41, 775 |
| NdeI | CATATG | 2 cut(s) | 1039, 2082 |
| NlaIV | GGNNCC | 7 cut(s) | 339, 568, 1726, 1925, 3066, 3142, 3143 |
| NmuCI | GTSAC | 3 cut(s) | 1015, 2827, 3242 |
| NsiI | ATGCAT | 3 cut(s) | 296, 1222, 3122 |
| NspI | RCATGY | 4 cut(s) | 527, 1010, 2886, 3267 |
| NspV | TTCGAA | 1 cut(s) | 3093 |
| PagI | TCATGA | 1 cut(s) | 135 |
| PceI | AGGCCT | 1 cut(s) | 1664 |
| PciSI | GCTCTTC | 3 cut(s) | 1521, 2976, 3165 |
| PctI | GAATGC | 3 cut(s) | 296, 1401, 2523 |
| PdmI | GAANNNNTTC | 4 cut(s) | 831, 1506, 2387, 3208 |
| PfeI | GAWTC | 9 cut(s) | 132, 283, 802, 858, 981, 1210, 2134, 2305, 2362 |
| PflFI | GACNNNGTC | 1 cut(s) | 1542 |
| PfoI | TCCNGGA | 1 cut(s) | 2776 |
| PinAI | ACCGGT | 1 cut(s) | 26 |
| PkrI | GCNGC | 8 cut(s) | 123, 126, 368, 1692, 2117, 2277, 2301, 2881 |
| PleI | GAGTC | 7 cut(s) | 1525, 1648, 2016, 2070, 2241, 2355, 2816 |
| PpsI | GAGTC | 7 cut(s) | 1525, 1648, 2016, 2070, 2241, 2355, 2816 |
| Ppu21I | YACGTR | 1 cut(s) | 258 |
| PpuMI | RGGWCCY | 2 cut(s) | 1923, 3064 |
| PshBI | ATTAAT | 1 cut(s) | 2553 |
| PsiI | TTATAA | 1 cut(s) | 2267 |
| Psp124BI | GAGCTC | 1 cut(s) | 1080 |
| Psp1406I | AACGTT | 1 cut(s) | 846 |
| Psp5II | RGGWCCY | 2 cut(s) | 1923, 3064 |
| Psp6I | CCWGG | 3 cut(s) | 212, 1531, 2776 |
| PspGI | CCWGG | 3 cut(s) | 212, 1531, 2776 |
| PspN4I | GGNNCC | 7 cut(s) | 339, 568, 1726, 1925, 3066, 3142, 3143 |
| PspOMI | GGGCCC | 1 cut(s) | 3141 |
| PspPI | GGNCC | 5 cut(s) | 1724, 1923, 3064, 3141, 3142 |
| PspPPI | RGGWCCY | 2 cut(s) | 1923, 3064 |
| PstI | CTGCAG | 2 cut(s) | 2304, 3310 |
| PsuI | RGATCY | 2 cut(s) | 1992, 2932 |
| PsyI | GACNNNGTC | 1 cut(s) | 1542 |
| RsaI | GTAC | 8 cut(s) | 245, 528, 1202, 1278, 1942, 1978, 2635, 3155 |
| RsaNI | GTAC | 8 cut(s) | 244, 527, 1201, 1277, 1941, 1977, 2634, 3154 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2925, 3125 |
| SacI | GAGCTC | 1 cut(s) | 1080 |
| SapI | GCTCTTC | 3 cut(s) | 1521, 2976, 3165 |
| SaqAI | TTAA | 9 cut(s) | 446, 1179, 1442, 1709, 2058, 2408, 2474, 2553, 3252 |
| SatI | GCNGC | 8 cut(s) | 122, 125, 367, 1691, 2116, 2276, 2300, 2880 |
| Sau96I | GGNCC | 5 cut(s) | 1724, 1923, 3064, 3141, 3142 |
| ScaI | AGTACT | 1 cut(s) | 1278 |
| SchI | GAGTC | 7 cut(s) | 1526, 1648, 2016, 2071, 2242, 2356, 2816 |
| ScrFI | CCNGG | 4 cut(s) | 214, 1533, 2778, 2988 |
| SduI | GDGCHC | 6 cut(s) | 8, 1080, 2890, 2947, 3145, 3151 |
| SfaNI | GCATC | 7 cut(s) | 430, 553, 747, 1207, 1633, 2839, 3107 |
| SfcI | CTRYAG | 3 cut(s) | 791, 2300, 3306 |
| SfuI | TTCGAA | 1 cut(s) | 3093 |
| SinI | GGWCC | 2 cut(s) | 1923, 3064 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2925, 3125 |
| SmlI | CTYRAG | 7 cut(s) | 1073, 1658, 1873, 2015, 2473, 2732, 2901 |
| SmoI | CTYRAG | 7 cut(s) | 1073, 1658, 1873, 2015, 2473, 2732, 2901 |
| SpeI | ACTAGT | 1 cut(s) | 700 |
| SseBI | AGGCCT | 1 cut(s) | 1664 |
| SsiI | CCGC | 6 cut(s) | 85, 124, 221, 374, 893, 2725 |
| SspI | AATATT | 2 cut(s) | 324, 3299 |
| SstI | GAGCTC | 1 cut(s) | 1080 |
| StuI | AGGCCT | 1 cut(s) | 1664 |
| StyD4I | CCNGG | 4 cut(s) | 212, 1531, 2776, 2986 |
| StyI | CCWWGG | 2 cut(s) | 41, 775 |
| TaaI | ACNGT | 7 cut(s) | 175, 276, 1134, 2423, 2759, 2924, 3153 |
| TaiI | ACGT | 5 cut(s) | 57, 260, 849, 1365, 3086 |
| TaqI | TCGA | 5 cut(s) | 204, 1893, 2225, 3000, 3093 |
| TaqII | GACCGA | 1 cut(s) | 1275 |
| TatI | WGTACW | 4 cut(s) | 526, 1276, 1976, 2633 |
| TauI | GCSGC | 1 cut(s) | 127 |
| TfiI | GAWTC | 9 cut(s) | 132, 283, 802, 858, 981, 1210, 2134, 2305, 2362 |
| Tru1I | TTAA | 9 cut(s) | 446, 1179, 1442, 1709, 2058, 2408, 2474, 2553, 3252 |
| Tru9I | TTAA | 9 cut(s) | 446, 1179, 1442, 1709, 2058, 2408, 2474, 2553, 3252 |
| TscAI | CASTG | 2 cut(s) | 2966, 3156 |
| TseFI | GTSAC | 3 cut(s) | 1015, 2827, 3242 |
| TseI | GCWGC | 7 cut(s) | 121, 366, 1690, 2115, 2275, 2299, 2879 |
| Tsp45I | GTSAC | 3 cut(s) | 1015, 2827, 3242 |
| TspGWI | ACGGA | 3 cut(s) | 1897, 2901, 3242 |
| TspRI | CASTG | 2 cut(s) | 2966, 3156 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1542 |
| Vha464I | CTTAAG | 1 cut(s) | 2473 |
| VneI | GTGCAC | 1 cut(s) | 3147 |
| VpaK11BI | GGWCC | 2 cut(s) | 1923, 3064 |
| VspI | ATTAAT | 1 cut(s) | 2553 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2473 |
| XapI | RAATTY | 9 cut(s) | 1182, 1225, 1320, 1394, 2028, 2035, 2141, 2787, 3095 |
| XceI | RCATGY | 4 cut(s) | 527, 1010, 2886, 3267 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3055 |
| XmiI | GTMKAC | 2 cut(s) | 1471, 2065 |
| XmnI | GAANNNNTTC | 4 cut(s) | 831, 1506, 2387, 3208 |
| ZrmI | AGTACT | 1 cut(s) | 1278 |
| Zsp2I | ATGCAT | 3 cut(s) | 296, 1222, 3122 |