TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_14 | PF23598 | 46 - 153 | 3.5e-15 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 76 - 160 | 1.2e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 146 - 231 | 3e-08 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 159 - 225 | 4.1e-09 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 212 - 295 | 1.2e-11 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 217 - 302 | 9e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 281 - 366 | 7e-12 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 288 - 374 | 4.6e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 355 - 461 | 1.3e-10 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 361 - 535 | 6.4e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 727 |
| AccB1I | GGYRCC | 1 cut(s) | 1518 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1713 |
| AccI | GTMKAC | 1 cut(s) | 1566 |
| AciI | CCGC | 1 cut(s) | 1522 |
| AclWI | GGATC | 1 cut(s) | 1645 |
| AcoI | YGGCCR | 2 cut(s) | 1480, 1599 |
| AcuI | CTGAAG | 1 cut(s) | 1490 |
| AcvI | CACGTG | 1 cut(s) | 319 |
| AfaI | GTAC | 4 cut(s) | 216, 522, 948, 1699 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1713 |
| AjnI | CCWGG | 1 cut(s) | 844 |
| AleI | CACNNNNGTG | 1 cut(s) | 1709 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1308, 1340 |
| AluBI | AGCT | 8 cut(s) | 265, 313, 478, 691, 904, 1117, 1165, 1546 |
| AluI | AGCT | 8 cut(s) | 265, 313, 478, 691, 904, 1117, 1165, 1546 |
| AlwI | GGATC | 1 cut(s) | 1645 |
| Ama87I | CYCGRG | 2 cut(s) | 89, 491 |
| AoxI | GGCC | 4 cut(s) | 502, 715, 1480, 1599 |
| ApeKI | GCWGC | 1 cut(s) | 4 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1285, 1317 |
| AseI | ATTAAT | 1 cut(s) | 30 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 372, 585, 1503 |
| AspS9I | GGNCC | 2 cut(s) | 502, 715 |
| AsuHPI | GGTGA | 1 cut(s) | 1696 |
| AsuNHI | GCTAGC | 1 cut(s) | 1571 |
| AvaI | CYCGRG | 2 cut(s) | 89, 491 |
| BalI | TGGCCA | 1 cut(s) | 1601 |
| BanI | GGYRCC | 1 cut(s) | 1518 |
| BauI | CACGAG | 1 cut(s) | 194 |
| BbrPI | CACGTG | 1 cut(s) | 319 |
| BbsI | GAAGAC | 5 cut(s) | 407, 620, 833, 1046, 1413 |
| BbvI | GCAGC | 1 cut(s) | 16 |
| BccI | CCATC | 1 cut(s) | 1558 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1302, 1336 |
| BciT130I | CCWGG | 1 cut(s) | 846 |
| BfaI | CTAG | 2 cut(s) | 1491, 1572 |
| BfuAI | ACCTGC | 1 cut(s) | 727 |
| BglII | AGATCT | 1 cut(s) | 403 |
| BisI | GCNGC | 2 cut(s) | 5, 1522 |
| BlsI | GCNGC | 2 cut(s) | 6, 1523 |
| Bme1390I | CCNGG | 1 cut(s) | 846 |
| BmeT110I | CYCGRG | 2 cut(s) | 89, 491 |
| BmgT120I | GGNCC | 2 cut(s) | 502, 715 |
| BmiI | GGNNCC | 2 cut(s) | 1326, 1520 |
| BmrFI | CCNGG | 1 cut(s) | 846 |
| BmrI | ACTGGG | 2 cut(s) | 1395, 1689 |
| BmsI | GCATC | 7 cut(s) | 520, 733, 946, 1194, 1403, 1485, 1568 |
| BmtI | GCTAGC | 1 cut(s) | 1575 |
| BmuI | ACTGGG | 2 cut(s) | 1395, 1689 |
| BoxI | GACNNNNGTC | 1 cut(s) | 288 |
| BpiI | GAAGAC | 5 cut(s) | 407, 620, 833, 1046, 1413 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 28, 60 |
| BpuEI | CTTGAG | 5 cut(s) | 622, 835, 1048, 1139, 1371 |
| BsaAI | YACGTR | 2 cut(s) | 319, 764 |
| BsaJI | CCNNGG | 1 cut(s) | 492 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1713 |
| Bse1I | ACTGG | 4 cut(s) | 334, 1401, 1665, 1684 |
| Bse3DI | GCAATG | 1 cut(s) | 1622 |
| BseBI | CCWGG | 1 cut(s) | 846 |
| BseDI | CCNNGG | 1 cut(s) | 492 |
| BseGI | GGATG | 1 cut(s) | 1418 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1713 |
| BseMI | GCAATG | 1 cut(s) | 1622 |
| BseMII | CTCAG | 4 cut(s) | 26, 699, 1240, 1456 |
| BseNI | ACTGG | 4 cut(s) | 334, 1401, 1665, 1684 |
| BseRI | GAGGAG | 4 cut(s) | 323, 509, 935, 1192 |
| BseXI | GCAGC | 1 cut(s) | 16 |
| BsgI | GTGCAG | 1 cut(s) | 755 |
| BshFI | GGCC | 4 cut(s) | 504, 717, 1482, 1601 |
| BshNI | GGYRCC | 1 cut(s) | 1518 |
| BsiHKCI | CYCGRG | 2 cut(s) | 89, 491 |
| BsiSI | CCGG | 2 cut(s) | 704, 1310 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1713 |
| BsmI | GAATGC | 2 cut(s) | 366, 1345 |
| BsnI | GGCC | 4 cut(s) | 504, 717, 1482, 1601 |
| BsoBI | CYCGRG | 2 cut(s) | 89, 491 |
| Bsp143I | GATC | 3 cut(s) | 403, 1438, 1637 |
| BspACI | CCGC | 1 cut(s) | 1522 |
| BspANI | GGCC | 4 cut(s) | 504, 717, 1482, 1601 |
| BspCNI | CTCAG | 4 cut(s) | 27, 698, 1239, 1455 |
| BspLI | GGNNCC | 2 cut(s) | 1326, 1520 |
| BspMI | ACCTGC | 1 cut(s) | 727 |
| BspOI | GCTAGC | 1 cut(s) | 1575 |
| BspPI | GGATC | 1 cut(s) | 1645 |
| BspT107I | GGYRCC | 1 cut(s) | 1518 |
| BsrDI | GCAATG | 1 cut(s) | 1622 |
| BsrI | ACTGG | 4 cut(s) | 334, 1401, 1665, 1684 |
| BssECI | CCNNGG | 1 cut(s) | 492 |
| BssMI | GATC | 3 cut(s) | 403, 1438, 1637 |
| BssSI | CACGAG | 1 cut(s) | 194 |
| Bst2BI | CACGAG | 1 cut(s) | 194 |
| Bst2UI | CCWGG | 1 cut(s) | 846 |
| Bst4CI | ACNGT | 3 cut(s) | 166, 1154, 1652 |
| Bst6I | CTCTTC | 2 cut(s) | 702, 1509 |
| BstBAI | YACGTR | 2 cut(s) | 319, 764 |
| BstC8I | GCNNGC | 5 cut(s) | 208, 575, 788, 1001, 1573 |
| BstDEI | CTNAG | 5 cut(s) | 35, 266, 685, 1226, 1442 |
| BstF5I | GGATG | 1 cut(s) | 1418 |
| BstKTI | GATC | 3 cut(s) | 406, 1441, 1640 |
| BstMBI | GATC | 3 cut(s) | 403, 1438, 1637 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 570, 783, 996 |
| BstNI | CCWGG | 1 cut(s) | 846 |
| BstNSI | RCATGY | 3 cut(s) | 577, 790, 1003 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 288 |
| BstSCI | CCNGG | 1 cut(s) | 844 |
| BstV1I | GCAGC | 1 cut(s) | 16 |
| BstV2I | GAAGAC | 5 cut(s) | 407, 620, 833, 1046, 1413 |
| BstX2I | RGATCY | 2 cut(s) | 403, 1637 |
| BstYI | RGATCY | 2 cut(s) | 403, 1637 |
| BsuRI | GGCC | 4 cut(s) | 504, 717, 1482, 1601 |
| BtsCI | GGATG | 1 cut(s) | 1418 |
| BtsI | GCAGTG | 6 cut(s) | 217, 430, 643, 856, 1069, 1576 |
| BtsIMutI | CAGTG | 9 cut(s) | 217, 327, 430, 643, 856, 1069, 1408, 1576, 1677 |
| BveI | ACCTGC | 1 cut(s) | 727 |
| Cac8I | GCNNGC | 5 cut(s) | 208, 575, 788, 1001, 1573 |
| Cfr13I | GGNCC | 2 cut(s) | 502, 715 |
| CseI | GACGC | 1 cut(s) | 1577 |
| Csp6I | GTAC | 4 cut(s) | 215, 521, 947, 1698 |
| CviAII | CATG | 7 cut(s) | 420, 574, 719, 787, 1000, 1145, 1257 |
| CviQI | GTAC | 4 cut(s) | 215, 521, 947, 1698 |
| DdeI | CTNAG | 5 cut(s) | 35, 266, 685, 1226, 1442 |
| DpnI | GATC | 3 cut(s) | 405, 1440, 1639 |
| DpnII | GATC | 3 cut(s) | 403, 1438, 1637 |
| DraI | TTTAAA | 1 cut(s) | 73 |
| EaeI | YGGCCR | 2 cut(s) | 1480, 1599 |
| Eam1104I | CTCTTC | 2 cut(s) | 702, 1509 |
| EarI | CTCTTC | 2 cut(s) | 702, 1509 |
| Eco57I | CTGAAG | 1 cut(s) | 1490 |
| Eco72I | CACGTG | 1 cut(s) | 319 |
| Eco88I | CYCGRG | 2 cut(s) | 89, 491 |
| EcoRII | CCWGG | 1 cut(s) | 844 |
| FaeI | CATG | 7 cut(s) | 423, 577, 722, 790, 1003, 1148, 1260 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 573, 605, 952, 984 |
| FatI | CATG | 7 cut(s) | 419, 573, 718, 786, 999, 1144, 1256 |
| FblI | GTMKAC | 1 cut(s) | 1566 |
| Fnu4HI | GCNGC | 2 cut(s) | 5, 1522 |
| FokI | GGATG | 1 cut(s) | 1425 |
| Fsp4HI | GCNGC | 2 cut(s) | 5, 1522 |
| FspBI | CTAG | 2 cut(s) | 1491, 1572 |
| GluI | GCNGC | 2 cut(s) | 5, 1522 |
| HaeIII | GGCC | 4 cut(s) | 504, 717, 1482, 1601 |
| HapII | CCGG | 2 cut(s) | 704, 1310 |
| HgaI | GACGC | 1 cut(s) | 1577 |
| Hin1II | CATG | 7 cut(s) | 423, 577, 722, 790, 1003, 1148, 1260 |
| HincII | GTYRAC | 4 cut(s) | 58, 133, 1150, 1648 |
| HindII | GTYRAC | 4 cut(s) | 58, 133, 1150, 1648 |
| HindIII | AAGCTT | 5 cut(s) | 263, 476, 902, 1115, 1163 |
| HinfI | GANTC | 7 cut(s) | 37, 49, 190, 244, 1244, 1499, 1720 |
| HpaI | GTTAAC | 1 cut(s) | 1648 |
| HpaII | CCGG | 2 cut(s) | 704, 1310 |
| HphI | GGTGA | 1 cut(s) | 1696 |
| Hpy166II | GTNNAC | 7 cut(s) | 58, 133, 215, 767, 1150, 1567, 1648 |
| Hpy188I | TCNGA | 8 cut(s) | 36, 48, 243, 688, 1190, 1229, 1533, 1637 |
| Hpy188III | TCNNGA | 5 cut(s) | 89, 104, 881, 1388, 1491 |
| Hpy8I | GTNNAC | 7 cut(s) | 58, 133, 215, 767, 1150, 1567, 1648 |
| HpyAV | CCTTC | 4 cut(s) | 101, 357, 575, 1001 |
| HpyCH4III | ACNGT | 3 cut(s) | 166, 1154, 1652 |
| HpyCH4IV | ACGT | 2 cut(s) | 318, 763 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 570, 783, 996 |
| HpyF3I | CTNAG | 5 cut(s) | 35, 266, 685, 1226, 1442 |
| HpySE526I | ACGT | 2 cut(s) | 318, 763 |
| Hsp92II | CATG | 7 cut(s) | 423, 577, 722, 790, 1003, 1148, 1260 |
| KspAI | GTTAAC | 1 cut(s) | 1648 |
| Kzo9I | GATC | 3 cut(s) | 403, 1438, 1637 |
| LmnI | GCTCC | 1 cut(s) | 310 |
| Lsp1109I | GCAGC | 1 cut(s) | 16 |
| LweI | GCATC | 7 cut(s) | 520, 733, 946, 1194, 1403, 1485, 1568 |
| MaeI | CTAG | 2 cut(s) | 1491, 1572 |
| MaeII | ACGT | 2 cut(s) | 318, 763 |
| MaeIII | GTNAC | 1 cut(s) | 1301 |
| MalI | GATC | 3 cut(s) | 405, 1440, 1639 |
| MboI | GATC | 3 cut(s) | 403, 1438, 1637 |
| MfeI | CAATTG | 1 cut(s) | 141 |
| MflI | RGATCY | 2 cut(s) | 403, 1637 |
| MlsI | TGGCCA | 1 cut(s) | 1601 |
| MluNI | TGGCCA | 1 cut(s) | 1601 |
| MlyI | GAGTC | 2 cut(s) | 46, 1253 |
| MnlI | CCTC | 8 cut(s) | 121, 301, 361, 487, 913, 1210, 1213, 1235 |
| Mox20I | TGGCCA | 1 cut(s) | 1601 |
| MroXI | GAANNNNTTC | 3 cut(s) | 372, 585, 1503 |
| MscI | TGGCCA | 1 cut(s) | 1601 |
| MslI | CAYNNNNRTG | 2 cut(s) | 321, 1709 |
| Msp20I | TGGCCA | 1 cut(s) | 1601 |
| MspI | CCGG | 2 cut(s) | 704, 1310 |
| MspR9I | CCNGG | 1 cut(s) | 846 |
| MunI | CAATTG | 1 cut(s) | 141 |
| Mva1269I | GAATGC | 2 cut(s) | 366, 1345 |
| MvaI | CCWGG | 1 cut(s) | 846 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 570, 783, 996 |
| NdeII | GATC | 3 cut(s) | 403, 1438, 1637 |
| NheI | GCTAGC | 1 cut(s) | 1571 |
| NlaIII | CATG | 7 cut(s) | 423, 577, 722, 790, 1003, 1148, 1260 |
| NlaIV | GGNNCC | 2 cut(s) | 1326, 1520 |
| NmuCI | GTSAC | 1 cut(s) | 1301 |
| NspI | RCATGY | 3 cut(s) | 577, 790, 1003 |
| OliI | CACNNNNGTG | 1 cut(s) | 1709 |
| PaeI | GCATGC | 3 cut(s) | 577, 790, 1003 |
| PaeR7I | CTCGAG | 1 cut(s) | 89 |
| PctI | GAATGC | 2 cut(s) | 366, 1345 |
| PdmI | GAANNNNTTC | 3 cut(s) | 372, 585, 1503 |
| PfeI | GAWTC | 5 cut(s) | 49, 190, 244, 1499, 1720 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1713 |
| PkrI | GCNGC | 2 cut(s) | 6, 1523 |
| PleI | GAGTC | 2 cut(s) | 45, 1252 |
| PmaCI | CACGTG | 1 cut(s) | 319 |
| PmlI | CACGTG | 1 cut(s) | 319 |
| PpsI | GAGTC | 2 cut(s) | 45, 1252 |
| Ppu21I | YACGTR | 2 cut(s) | 319, 764 |
| PshAI | GACNNNNGTC | 1 cut(s) | 288 |
| PshBI | ATTAAT | 1 cut(s) | 30 |
| Psp6I | CCWGG | 1 cut(s) | 844 |
| PspCI | CACGTG | 1 cut(s) | 319 |
| PspGI | CCWGG | 1 cut(s) | 844 |
| PspN4I | GGNNCC | 2 cut(s) | 1326, 1520 |
| PspPI | GGNCC | 2 cut(s) | 502, 715 |
| PsuI | RGATCY | 2 cut(s) | 403, 1637 |
| RsaI | GTAC | 4 cut(s) | 216, 522, 948, 1699 |
| RsaNI | GTAC | 4 cut(s) | 215, 521, 947, 1698 |
| RseI | CAYNNNNRTG | 2 cut(s) | 321, 1709 |
| SatI | GCNGC | 2 cut(s) | 5, 1522 |
| Sau3AI | GATC | 3 cut(s) | 403, 1438, 1637 |
| Sau96I | GGNCC | 2 cut(s) | 502, 715 |
| SchI | GAGTC | 2 cut(s) | 46, 1253 |
| ScrFI | CCNGG | 1 cut(s) | 846 |
| SfaNI | GCATC | 7 cut(s) | 520, 733, 946, 1194, 1403, 1485, 1568 |
| Sfr274I | CTCGAG | 1 cut(s) | 89 |
| SlaI | CTCGAG | 1 cut(s) | 89 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 321, 1709 |
| SmlI | CTYRAG | 6 cut(s) | 89, 601, 814, 1027, 1118, 1386 |
| SmoI | CTYRAG | 6 cut(s) | 89, 601, 814, 1027, 1118, 1386 |
| SphI | GCATGC | 3 cut(s) | 577, 790, 1003 |
| SsiI | CCGC | 1 cut(s) | 1522 |
| SspI | AATATT | 1 cut(s) | 460 |
| SspMI | CTAG | 2 cut(s) | 1491, 1572 |
| StyD4I | CCNGG | 1 cut(s) | 844 |
| TaaI | ACNGT | 3 cut(s) | 166, 1154, 1652 |
| TaiI | ACGT | 2 cut(s) | 321, 766 |
| TaqI | TCGA | 3 cut(s) | 90, 882, 1723 |
| TatI | WGTACW | 1 cut(s) | 214 |
| TauI | GCSGC | 1 cut(s) | 1524 |
| TfiI | GAWTC | 5 cut(s) | 49, 190, 244, 1499, 1720 |
| TscAI | CASTG | 9 cut(s) | 217, 334, 430, 643, 856, 1069, 1408, 1583, 1684 |
| TseFI | GTSAC | 1 cut(s) | 1301 |
| TseI | GCWGC | 1 cut(s) | 4 |
| Tsp45I | GTSAC | 1 cut(s) | 1301 |
| TspDTI | ATGAA | 5 cut(s) | 1338, 1413, 1447, 1575, 1686 |
| TspRI | CASTG | 9 cut(s) | 217, 334, 430, 643, 856, 1069, 1408, 1583, 1684 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1713 |
| VspI | ATTAAT | 1 cut(s) | 30 |
| XbaI | TCTAGA | 1 cut(s) | 1490 |
| XceI | RCATGY | 3 cut(s) | 577, 790, 1003 |
| XhoI | CTCGAG | 1 cut(s) | 89 |
| XmiI | GTMKAC | 1 cut(s) | 1566 |
| XmnI | GAANNNNTTC | 3 cut(s) | 372, 585, 1503 |
| XspI | CTAG | 2 cut(s) | 1491, 1572 |