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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1551 |
| AccII | CGCG | 1 cut(s) | 52 |
| AciI | CCGC | 4 cut(s) | 50, 1100, 1431, 1564 |
| AclWI | GGATC | 6 cut(s) | 216, 373, 884, 897, 968, 989 |
| AcsI | RAATTY | 1 cut(s) | 386 |
| AcuI | CTGAAG | 1 cut(s) | 323 |
| AcyI | GRCGYC | 1 cut(s) | 1548 |
| AfaI | GTAC | 4 cut(s) | 223, 645, 868, 1448 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 593, 940, 1036, 1037, 1038, 1219, 1406, 1569 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 456, 488, 1394, 1426 |
| AluBI | AGCT | 7 cut(s) | 42, 147, 514, 1093, 1116, 1208, 1523 |
| AluI | AGCT | 7 cut(s) | 42, 147, 514, 1093, 1116, 1208, 1523 |
| Alw21I | GWGCWC | 1 cut(s) | 1273 |
| Alw26I | GTCTC | 2 cut(s) | 33, 1388 |
| Alw44I | GTGCAC | 1 cut(s) | 1269 |
| AlwI | GGATC | 6 cut(s) | 216, 373, 884, 897, 968, 989 |
| Ama87I | CYCGRG | 1 cut(s) | 1046 |
| AoxI | GGCC | 3 cut(s) | 475, 584, 1295 |
| ApaLI | GTGCAC | 1 cut(s) | 1269 |
| ApeKI | GCWGC | 2 cut(s) | 1113, 1208 |
| ApoI | RAATTY | 1 cut(s) | 386 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 353, 1347, 1359 |
| AspLEI | GCGC | 1 cut(s) | 1081 |
| AspS9I | GGNCC | 3 cut(s) | 557, 584, 1251 |
| AsuC2I | CCSGG | 1 cut(s) | 1032 |
| AsuHPI | GGTGA | 5 cut(s) | 38, 233, 677, 683, 1432 |
| AsuII | TTCGAA | 1 cut(s) | 392 |
| AvaI | CYCGRG | 1 cut(s) | 1046 |
| AvaII | GGWCC | 2 cut(s) | 557, 1251 |
| AxyI | CCTNAGG | 1 cut(s) | 1155 |
| BaeGI | GKGCMC | 2 cut(s) | 1031, 1273 |
| BamHI | GGATCC | 1 cut(s) | 889 |
| BanII | GRGCYC | 1 cut(s) | 1438 |
| BauI | CACGAG | 1 cut(s) | 1437 |
| BbsI | GAAGAC | 4 cut(s) | 179, 600, 960, 1163 |
| Bbv12I | GWGCWC | 1 cut(s) | 1273 |
| BbvI | GCAGC | 2 cut(s) | 1125, 1195 |
| BccI | CCATC | 5 cut(s) | 253, 575, 901, 1114, 1217 |
| BciVI | GTATCC | 1 cut(s) | 27 |
| BclI | TGATCA | 1 cut(s) | 162 |
| BcnI | CCSGG | 1 cut(s) | 1032 |
| BcoDI | GTCTC | 2 cut(s) | 33, 1388 |
| BfaI | CTAG | 2 cut(s) | 483, 1082 |
| BfuI | GTATCC | 1 cut(s) | 27 |
| BglII | AGATCT | 1 cut(s) | 823 |
| BisI | GCNGC | 2 cut(s) | 1114, 1209 |
| BlsI | GCNGC | 2 cut(s) | 1115, 1210 |
| BmcAI | AGTACT | 1 cut(s) | 645 |
| Bme1390I | CCNGG | 1 cut(s) | 1032 |
| Bme18I | GGWCC | 2 cut(s) | 557, 1251 |
| BmeT110I | CYCGRG | 1 cut(s) | 1046 |
| BmgT120I | GGNCC | 3 cut(s) | 557, 584, 1251 |
| BmiI | GGNNCC | 1 cut(s) | 891 |
| BmrFI | CCNGG | 1 cut(s) | 1032 |
| BmsI | GCATC | 4 cut(s) | 322, 350, 765, 790 |
| BpiI | GAAGAC | 4 cut(s) | 179, 600, 960, 1163 |
| Bpu14I | TTCGAA | 1 cut(s) | 392 |
| BpuEI | CTTGAG | 3 cut(s) | 218, 797, 830 |
| BpuMI | CCSGG | 1 cut(s) | 1032 |
| Bsa29I | ATCGAT | 2 cut(s) | 458, 717 |
| BsaAI | YACGTR | 2 cut(s) | 428, 850 |
| BsaHI | GRCGYC | 1 cut(s) | 1548 |
| BsaJI | CCNNGG | 1 cut(s) | 1030 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 593, 940, 1036, 1037, 1038, 1219, 1406, 1569 |
| Bse1I | ACTGG | 2 cut(s) | 187, 962 |
| Bse21I | CCTNAGG | 1 cut(s) | 1155 |
| Bse3DI | GCAATG | 2 cut(s) | 249, 579 |
| BseCI | ATCGAT | 2 cut(s) | 458, 717 |
| BseDI | CCNNGG | 1 cut(s) | 1030 |
| BseGI | GGATG | 9 cut(s) | 109, 245, 337, 365, 583, 893, 1015, 1125, 1228 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 593, 940, 1036, 1037, 1038, 1219, 1406, 1569 |
| BseMI | GCAATG | 2 cut(s) | 249, 579 |
| BseMII | CTCAG | 3 cut(s) | 134, 479, 990 |
| BseNI | ACTGG | 2 cut(s) | 187, 962 |
| BseRI | GAGGAG | 1 cut(s) | 215 |
| BseSI | GKGCMC | 2 cut(s) | 1031, 1273 |
| BseXI | GCAGC | 2 cut(s) | 1125, 1195 |
| Bsh1236I | CGCG | 1 cut(s) | 52 |
| BshFI | GGCC | 3 cut(s) | 477, 586, 1297 |
| BshVI | ATCGAT | 2 cut(s) | 458, 717 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1273 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1046 |
| BsiSI | CCGG | 1 cut(s) | 1032 |
| BslFI | GGGAC | 2 cut(s) | 445, 1086 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 593, 940, 1036, 1037, 1038, 1219, 1406, 1569 |
| BsmAI | GTCTC | 2 cut(s) | 33, 1388 |
| BsmFI | GGGAC | 2 cut(s) | 445, 1086 |
| BsmI | GAATGC | 1 cut(s) | 78 |
| BsnI | GGCC | 3 cut(s) | 477, 586, 1297 |
| BsoBI | CYCGRG | 1 cut(s) | 1046 |
| Bsp119I | TTCGAA | 1 cut(s) | 392 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1031, 1273, 1438 |
| Bsp1407I | TGTACA | 1 cut(s) | 1446 |
| BspACI | CCGC | 4 cut(s) | 50, 1100, 1431, 1564 |
| BspANI | GGCC | 3 cut(s) | 477, 586, 1297 |
| BspCNI | CTCAG | 3 cut(s) | 135, 480, 991 |
| BspDI | ATCGAT | 2 cut(s) | 458, 717 |
| BspFNI | CGCG | 1 cut(s) | 52 |
| BspHI | TCATGA | 1 cut(s) | 1351 |
| BspLI | GGNNCC | 1 cut(s) | 891 |
| BspPI | GGATC | 6 cut(s) | 216, 373, 884, 897, 968, 989 |
| BspQI | GCTCTTC | 1 cut(s) | 342 |
| BspT104I | TTCGAA | 1 cut(s) | 392 |
| BsrDI | GCAATG | 2 cut(s) | 249, 579 |
| BsrGI | TGTACA | 1 cut(s) | 1446 |
| BsrI | ACTGG | 2 cut(s) | 187, 962 |
| BssECI | CCNNGG | 1 cut(s) | 1030 |
| BssNI | GRCGYC | 1 cut(s) | 1548 |
| BssSI | CACGAG | 1 cut(s) | 1437 |
| Bst2BI | CACGAG | 1 cut(s) | 1437 |
| Bst4CI | ACNGT | 3 cut(s) | 734, 1259, 1359 |
| Bst6I | CTCTTC | 4 cut(s) | 36, 342, 502, 1509 |
| BstACI | GRCGYC | 1 cut(s) | 1548 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 762 |
| BstAUI | TGTACA | 1 cut(s) | 1446 |
| BstBAI | YACGTR | 2 cut(s) | 428, 850 |
| BstBI | TTCGAA | 1 cut(s) | 392 |
| BstC8I | GCNNGC | 1 cut(s) | 754 |
| BstDEI | CTNAG | 7 cut(s) | 68, 143, 488, 640, 722, 999, 1155 |
| BstF5I | GGATG | 9 cut(s) | 109, 245, 337, 365, 583, 893, 1015, 1125, 1228 |
| BstFNI | CGCG | 1 cut(s) | 52 |
| BstHHI | GCGC | 1 cut(s) | 1081 |
| BstMAI | GTCTC | 2 cut(s) | 33, 1388 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 762, 1099 |
| BstNSI | RCATGY | 1 cut(s) | 1079 |
| BstSCI | CCNGG | 1 cut(s) | 1030 |
| BstSLI | GKGCMC | 2 cut(s) | 1031, 1273 |
| BstSNI | TACGTA | 1 cut(s) | 850 |
| BstUI | CGCG | 1 cut(s) | 52 |
| BstV1I | GCAGC | 2 cut(s) | 1125, 1195 |
| BstV2I | GAAGAC | 4 cut(s) | 179, 600, 960, 1163 |
| BstX2I | RGATCY | 4 cut(s) | 208, 378, 823, 889 |
| BstYI | RGATCY | 4 cut(s) | 208, 378, 823, 889 |
| Bsu15I | ATCGAT | 2 cut(s) | 458, 717 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1155 |
| BsuI | GTATCC | 1 cut(s) | 27 |
| BsuRI | GGCC | 3 cut(s) | 477, 586, 1297 |
| BsuTUI | ATCGAT | 2 cut(s) | 458, 717 |
| BtsCI | GGATG | 9 cut(s) | 109, 245, 337, 365, 583, 893, 1015, 1125, 1228 |
| BtsIMutI | CAGTG | 1 cut(s) | 180 |
| Cac8I | GCNNGC | 1 cut(s) | 754 |
| CciI | TCATGA | 1 cut(s) | 1351 |
| CfoI | GCGC | 1 cut(s) | 1081 |
| Cfr13I | GGNCC | 3 cut(s) | 557, 584, 1251 |
| ClaI | ATCGAT | 2 cut(s) | 458, 717 |
| CseI | GACGC | 1 cut(s) | 65 |
| Csp6I | GTAC | 4 cut(s) | 222, 644, 867, 1447 |
| CviAII | CATG | 4 cut(s) | 1076, 1281, 1352, 1502 |
| CviQI | GTAC | 4 cut(s) | 222, 644, 867, 1447 |
| DdeI | CTNAG | 7 cut(s) | 68, 143, 488, 640, 722, 999, 1155 |
| DraI | TTTAAA | 1 cut(s) | 708 |
| Eam1104I | CTCTTC | 4 cut(s) | 36, 342, 502, 1509 |
| EarI | CTCTTC | 4 cut(s) | 36, 342, 502, 1509 |
| Eco105I | TACGTA | 1 cut(s) | 850 |
| Eco147I | AGGCCT | 1 cut(s) | 1297 |
| Eco24I | GRGCYC | 1 cut(s) | 1438 |
| Eco32I | GATATC | 1 cut(s) | 676 |
| Eco47I | GGWCC | 2 cut(s) | 557, 1251 |
| Eco57I | CTGAAG | 1 cut(s) | 323 |
| Eco81I | CCTNAGG | 1 cut(s) | 1155 |
| Eco88I | CYCGRG | 1 cut(s) | 1046 |
| EcoRV | GATATC | 1 cut(s) | 676 |
| EcoT38I | GRGCYC | 1 cut(s) | 1438 |
| FaeI | CATG | 4 cut(s) | 1079, 1284, 1355, 1505 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1148, 1180, 1332, 1364 |
| FaqI | GGGAC | 2 cut(s) | 445, 1086 |
| FatI | CATG | 4 cut(s) | 1075, 1280, 1351, 1501 |
| FauI | CCCGC | 3 cut(s) | 57, 1424, 1571 |
| FbaI | TGATCA | 1 cut(s) | 162 |
| Fnu4HI | GCNGC | 2 cut(s) | 1114, 1209 |
| FokI | GGATG | 9 cut(s) | 116, 232, 344, 372, 590, 880, 1002, 1132, 1235 |
| FriOI | GRGCYC | 1 cut(s) | 1438 |
| Fsp4HI | GCNGC | 2 cut(s) | 1114, 1209 |
| FspBI | CTAG | 2 cut(s) | 483, 1082 |
| GlaI | GCGC | 1 cut(s) | 1080 |
| GluI | GCNGC | 2 cut(s) | 1114, 1209 |
| HaeIII | GGCC | 3 cut(s) | 477, 586, 1297 |
| HapII | CCGG | 1 cut(s) | 1032 |
| HgaI | GACGC | 1 cut(s) | 65 |
| HhaI | GCGC | 1 cut(s) | 1081 |
| Hin1I | GRCGYC | 1 cut(s) | 1548 |
| Hin1II | CATG | 4 cut(s) | 1079, 1284, 1355, 1505 |
| Hin6I | GCGC | 1 cut(s) | 1079 |
| HinP1I | GCGC | 1 cut(s) | 1079 |
| HindIII | AAGCTT | 1 cut(s) | 40 |
| HinfI | GANTC | 7 cut(s) | 238, 280, 349, 1042, 1227, 1234, 1393 |
| HpaII | CCGG | 1 cut(s) | 1032 |
| HphI | GGTGA | 5 cut(s) | 38, 233, 677, 683, 1432 |
| Hpy166II | GTNNAC | 5 cut(s) | 414, 1244, 1262, 1271, 1447 |
| Hpy188I | TCNGA | 9 cut(s) | 144, 359, 682, 889, 927, 1199, 1251, 1309, 1388 |
| Hpy188III | TCNNGA | 8 cut(s) | 197, 555, 771, 985, 1046, 1231, 1352, 1489 |
| Hpy8I | GTNNAC | 5 cut(s) | 414, 1244, 1262, 1271, 1447 |
| HpyAV | CCTTC | 5 cut(s) | 30, 462, 662, 755, 1447 |
| HpyCH4III | ACNGT | 3 cut(s) | 734, 1259, 1359 |
| HpyCH4IV | ACGT | 4 cut(s) | 427, 649, 849, 1548 |
| HpyCH4V | TGCA | 4 cut(s) | 254, 504, 1148, 1271 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 762, 1099 |
| HpyF3I | CTNAG | 7 cut(s) | 68, 143, 488, 640, 722, 999, 1155 |
| HpySE526I | ACGT | 4 cut(s) | 427, 649, 849, 1548 |
| Hsp92I | GRCGYC | 1 cut(s) | 1548 |
| Hsp92II | CATG | 4 cut(s) | 1079, 1284, 1355, 1505 |
| HspAI | GCGC | 1 cut(s) | 1079 |
| Ksp22I | TGATCA | 1 cut(s) | 162 |
| LguI | GCTCTTC | 1 cut(s) | 342 |
| LmnI | GCTCC | 3 cut(s) | 368, 1090, 1520 |
| Lsp1109I | GCAGC | 2 cut(s) | 1125, 1195 |
| LweI | GCATC | 4 cut(s) | 322, 350, 765, 790 |
| MaeI | CTAG | 2 cut(s) | 483, 1082 |
| MaeII | ACGT | 4 cut(s) | 427, 649, 849, 1548 |
| MaeIII | GTNAC | 1 cut(s) | 739 |
| MflI | RGATCY | 4 cut(s) | 208, 378, 823, 889 |
| MhlI | GDGCHC | 3 cut(s) | 1031, 1273, 1438 |
| MluCI | AATT | 6 cut(s) | 158, 386, 446, 842, 898, 928 |
| MmeI | TCCRAC | 2 cut(s) | 186, 867 |
| MnlI | CCTC | 7 cut(s) | 193, 320, 628, 1107, 1308, 1344, 1510 |
| MroXI | GAANNNNTTC | 3 cut(s) | 353, 1347, 1359 |
| MseI | TTAA | 4 cut(s) | 261, 270, 303, 707 |
| MspA1I | CMGCKG | 2 cut(s) | 1116, 1208 |
| MspI | CCGG | 1 cut(s) | 1032 |
| MspR9I | CCNGG | 1 cut(s) | 1032 |
| Mva1269I | GAATGC | 1 cut(s) | 78 |
| MvnI | CGCG | 1 cut(s) | 52 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 762, 1099 |
| NciI | CCSGG | 1 cut(s) | 1032 |
| NlaIII | CATG | 4 cut(s) | 1079, 1284, 1355, 1505 |
| NlaIV | GGNNCC | 1 cut(s) | 891 |
| NspI | RCATGY | 1 cut(s) | 1079 |
| NspV | TTCGAA | 1 cut(s) | 392 |
| PagI | TCATGA | 1 cut(s) | 1351 |
| PceI | AGGCCT | 1 cut(s) | 1297 |
| PciSI | GCTCTTC | 1 cut(s) | 342 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1255 |
| PctI | GAATGC | 1 cut(s) | 78 |
| PdmI | GAANNNNTTC | 3 cut(s) | 353, 1347, 1359 |
| PfeI | GAWTC | 7 cut(s) | 238, 280, 349, 1042, 1227, 1234, 1393 |
| PkrI | GCNGC | 2 cut(s) | 1115, 1210 |
| Ppu21I | YACGTR | 2 cut(s) | 428, 850 |
| PspN4I | GGNNCC | 1 cut(s) | 891 |
| PspPI | GGNCC | 3 cut(s) | 557, 584, 1251 |
| PsuI | RGATCY | 4 cut(s) | 208, 378, 823, 889 |
| PvuII | CAGCTG | 2 cut(s) | 1116, 1208 |
| RsaI | GTAC | 4 cut(s) | 223, 645, 868, 1448 |
| RsaNI | GTAC | 4 cut(s) | 222, 644, 867, 1447 |
| SapI | GCTCTTC | 1 cut(s) | 342 |
| SaqAI | TTAA | 4 cut(s) | 261, 270, 303, 707 |
| SatI | GCNGC | 2 cut(s) | 1114, 1209 |
| Sau96I | GGNCC | 3 cut(s) | 557, 584, 1251 |
| ScaI | AGTACT | 1 cut(s) | 645 |
| ScrFI | CCNGG | 1 cut(s) | 1032 |
| SduI | GDGCHC | 3 cut(s) | 1031, 1273, 1438 |
| SfaNI | GCATC | 4 cut(s) | 322, 350, 765, 790 |
| SfuI | TTCGAA | 1 cut(s) | 392 |
| SinI | GGWCC | 2 cut(s) | 557, 1251 |
| SmlI | CTYRAG | 3 cut(s) | 197, 776, 809 |
| SmoI | CTYRAG | 3 cut(s) | 197, 776, 809 |
| SnaBI | TACGTA | 1 cut(s) | 850 |
| Sse9I | AATT | 6 cut(s) | 158, 386, 446, 842, 898, 928 |
| SseBI | AGGCCT | 1 cut(s) | 1297 |
| SsiI | CCGC | 4 cut(s) | 50, 1100, 1431, 1564 |
| SspI | AATATT | 1 cut(s) | 1508 |
| SspMI | CTAG | 2 cut(s) | 483, 1082 |
| StuI | AGGCCT | 1 cut(s) | 1297 |
| StyD4I | CCNGG | 1 cut(s) | 1030 |
| TaaI | ACNGT | 3 cut(s) | 734, 1259, 1359 |
| TaiI | ACGT | 4 cut(s) | 430, 652, 852, 1551 |
| TaqI | TCGA | 4 cut(s) | 392, 458, 717, 772 |
| TasI | AATT | 6 cut(s) | 158, 386, 446, 842, 898, 928 |
| TatI | WGTACW | 3 cut(s) | 643, 866, 1446 |
| TfiI | GAWTC | 7 cut(s) | 238, 280, 349, 1042, 1227, 1234, 1393 |
| Tru1I | TTAA | 4 cut(s) | 261, 270, 303, 707 |
| Tru9I | TTAA | 4 cut(s) | 261, 270, 303, 707 |
| TscAI | CASTG | 1 cut(s) | 187 |
| TseI | GCWGC | 2 cut(s) | 1113, 1208 |
| TspGWI | ACGGA | 3 cut(s) | 819, 1235, 1288 |
| TspRI | CASTG | 1 cut(s) | 187 |
| VneI | GTGCAC | 1 cut(s) | 1269 |
| VpaK11BI | GGWCC | 2 cut(s) | 557, 1251 |
| XapI | RAATTY | 1 cut(s) | 386 |
| XceI | RCATGY | 1 cut(s) | 1079 |
| XmnI | GAANNNNTTC | 3 cut(s) | 353, 1347, 1359 |
| XspI | CTAG | 2 cut(s) | 483, 1082 |
| ZraI | GACGTC | 1 cut(s) | 1549 |
| ZrmI | AGTACT | 1 cut(s) | 645 |