Rw1G029370

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000007
Physical Location & Seq
Forward (+)
57050834 .. 57064678
13845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G029370.1

Sequence Viewer

Length: 6927 bp
ATGGCGTTGAGCACCCAAGTTAGAGCCTCCACTGGTTCAGCTTTCCCATGGAAATACGACGTGTTTTTGAGCTTTAGAGGCGAAGACACCCGAAAGGGCTTCACAGATCACTTATACGACAAGTTGCAGTGCCGAGGAATCACGACATTCAGGGATGACCCAGAACTTGAAAAAGGCACTGCCATCTCTTCGGAGCTCCTCTCAGCAATCGAGCAATCCAGGTTTGCGGTCGTTGTTCTTTCGCCAAACTATGCTTCTTCCACGTGGTGCTTACTTGAACTGTCTAAGATTTTTGAATGCATGGAAGAGAGGGGGACAATTCTACCAATCTTTTATGAGGTGGAGCCGTCTCATGTGAGACATCAAAGAGGCAGCTTTGCTGAAGCGTTCGATGAACATGAAGAGAAGCTTGGAGAAGGTAATAAGGAGGTGGAAGGGTGGAGAGATGCTTTAACAAAAGTAGCCAATCTCGCTGGGTGGACTTCAAAGAATTATAGGTATGAAACAGAGCTTATCAGAGAAATTGTGCAAGCACTATGGAGCAAAGTGCATCCTAGTCTCACAGTATTTGGTTCCTCAGAGAAGTTAGTTGGAATGGATACTAAGCTGGAGGAAATAGACGTTCTTTTAGATAAAGAAGCAAATGATGTTCGCTTTATAGGGGTATGGGGGATGGGTGGGTTGGGTAAGACAACCCTTGCTAGACTAGTTTATGAGCAGATCTCTGATCAATTTGAAGTTTGCATCTTTCTTGCTAATGTTAGAGAGGTTTCTGCAACCCATGGTCTAGTTTATCTACAAAAGCAGATTCTTTCCCAAATCTTGAAGGAAGAAAATGTACAAGTATGGGATGTTTATAGTGGAATCACTATGACAAAGAGATGTTTATGTAATAAAGTAGTTCTTCTAGTTCTTGACGATGTGGATCAGGTAGAGCAACTGGAAACCTTGGTGGGAGAAAAAGATTGGTTTAGCTTGAGGAGTAGAATCATCATTACAACTAGAAATCGACATATCCTAGTCACACATGGTATAGAAAAACCGTATGAGTTGAAGGGGTTAAACGATGATGAAGCTCTCCAGCTCTTTAGTTGGAAAGCCTTTAGGAAATATGAGCCTGAAGAAGATTATGCAGAACACTCTAAGAGTTTTGTTATGTATGCTGGAGGTCTTCCCTTAGCTCTTAAAACTTTGGGATCTTTCTTGTATAAAAGAAGTCCACATGCATGGAGTTCTACACTGCAAAAACTACAACAAATTCCCAACACAACAGTTTTTGAAATCCTGAAAATAAGTTATGATGGACTTGATGAGATGGAAAAAAAAGTTTTTCTGGATATTGCATGTTTCCACAGGCTGTACTACAATGAGTTTATGATTGAACAAGTATATAGTTCTGACTTTTGCATTCGTATTGCAATAGATGTTCTTGTTGAGAAATCTCTCTTAACTATTGTAGTAGAAAAAGACATAGATATACATGAATTGATAGAAGAAATGGGACGTGAAATTGTTCGAAGAGAGTGCTGTGAAGAGCCTGGTGGGCGCAGTCGCTTGTGGCTTCGCAAAGACATTTTTCACGTGTTCATGAAGAATACGGGAACAGAAGTCATCGAAGGCATATTCTTACACTTGGAAGAATTAGAAGAGGCAGATTGGAATCTTGAAGCCTTCTCTAAAATGTGTAAACTGAAGCTGCTCTACATTCATAATTTGAGGCTTTCTCTTGGCCCCAAATGTCTTCCTAATGCCTTGAGATTTCTGAAATGGAGTTGGTATCCTTCAAAATCTCTCCCACCAGGTTTTCAACCGGATGACCTTACTGAACTTAGCTTGGTTCATAGCAATATTGATCACCTCTGGAATGGAATAAAATACTTGGGCAAGTTGAAATCTATCGATCTTAGTTACTCCATAAAGTTGACAAGGACCCCAGATTTCACAGGTATTCAAAACCTTGAGAAGTTAGTTTTTGAAGGTTGTACGAATTTAGTTGATATTCATCCATCCATCGCATTTCTCAATAGACTCAAAATTTTGAACTTTAGAAATTGCAAAAGTATTAAGTGTTTCCCAAGTGAAGTAGAAATGGAATCACTTGAAACATTTGATGTATCTGGCTGCTCTATACTGAAAATGATTCCAGAATTTGTGGGGCAAATGAAAAGAATATCAAAGCTCTATTTAAGTGGGACAGATATTGAGAAACTGCCTTCATCAATTGAGCGCTTCAGTGAGAGTTTGGTGGAGCTTGATTTGAGTGGAATTGTTACAAGAGGGCTGCCATACTCCCTTTTTCTTAAGCAGAATCTCAGAGTATCATCTTTTGGCTTATTTCCAAGGAAGAGTCCTCACCCTTTGATTCCTCTTTTGGCTTCTTTAAAGCATTTGTCTTCTTTGACGTCATTAAATCTGAATGGCTGTAATCTCCGTGAAGGAGAAATTCCCAATGATATTGGTTCTATGTCCTCCTTGGAGAATTTGGATCTCAGAGGAAACAATTTTGTTAGCCTTCCTGCAAGCATTCATTTGCTTTCTAAGCTTCAATATATTAACGTGGAGGATTGCAAAAGGCTCCAACAATTGCCAGACCTCCCATCAAATGACTATTTATCAGTAAGAACCGACAATTGTACTTCGTTGCAACTGTTTCCACATCCACAAGTGTATGGTCGACAATTTATGTATGTTTGCATAAATTGCTTGAGCACGGTCGTGAATCGAGATTCTAGTTATTTCTTATATTCAATGCTAAAGCGGTTGCTTGAGGAAACCCCTTGTTCTTTTTACTATTTCAGTTTTATAATTCCTGGAAGTGAAATTTTTGAGTGGTTCAGTAATCAAAGTTTGGGGGACTCGGTGACTGCTAAGTTACCTTCATATTTATGTAACAGCAGCAAGTGGATTGGGGTTGCTGTATGTGCTCTATTTGTACCTCAAGACAATCCGTCTGCCGTTCCTGAAGACGATGAGCTAGATCCTAATACCTGTCAAATTTTCTGCACATGGGATGGATACAGTTCTGGCTTATCAGCTGTTGGTCACAGCGTAAAACAAATTGTTGCAGATCACCTTTACTTTGTTGTTTTACACAAGCGATTCTTAGAACCTCAGTACTGTCTGGAGGACACGTGCTATGAGGTTAAGTTTGTTTTCCAAACCGTTCGAGCTGTAGGAAACAACAGATGCTTGCAGGTGAAGAAATGTGGGGCCTATGCACTGTACAAGCAGCACACGGAAGAGCTGATCAGTAAAATGAATCAATCCAGCAGCAGCATTTCTCTTTACATGGAAGAGACTATGGATTTTAGAGCCTCCACCGGTTCAGCGTTCCCATGGAAATACGACGTCTTTTTGAGCTTCAGAGGCGAAGACACCCGCAAGGGCTTCACAGACCATTTATATGACAAGTTGAAGTGGAGAGGAATCAGGACTTTCAGGGACGACCCAGAACTTGAAAGAGGCACAGCCATCTCTCCGGAGCTCCTCACTGCAATCGAGCAATCCAGGTTTGCGATCGTTGTTCTTTCGCCAAACTATGCTTCTTCCACTTGGTGCTTGCTTGAACTCTCTAAGATTTGTGAATGCATGGAAGAGAGAGGGACAATTCTTCCAATCTTTTATGAGGTGGATCCCTCTCATGTGAGACATCAAAGGGGCAGCTTTGCTGAAGCGTTCGATGAACATGAAGAGAAGCTTGGGAAAGATAGTAAGGAGGTGGAAGGGTGGAGAGATGCTTTAACAAAAGTAGCCAATCTCGCTGGCTGGACTTCAAAGGATTATAGGTACGAAACAGAGCTTATGAAAGATGTTGTGCAAGCACTGTGGAGCAAAGTGCATCCTACTTTAACCATATTTGATTCCTCAGAGAAGTTAGTCGGAATGGATGCTAAGTTTGGGGAAATAGATGTTCTTTTAGATAAAGAAGCAAACGATGTCCGCTTTATAGGGATATGGGGGATGGGTGGGGTGGGTAAGACCACCCTTGCTAGAGTGGTGTATGAGAAAATTTCTCATCAGTTTGAAGTTTGCATCTTTCTTGCTAATGTCAGAGAGGTTTCTGCTACACTCGGTCTAGTTCATCTACAGAAACAAATTCTTTCCCAAATCTTGAAGGAAGAAAATGTTCAAGTATGGGATGTTTATGATGGAATGACTAGGACAAAGAGATGTGTATGTAATAAAGCAGTTCTTCTAGTTCTTGACGATGTGGATCAACCAGAGCAACTGAAAAACTTGGTGGGAGAAAAAGACTGGTTTGGTTTAAGGAGTAGAATCATCATTACAACCAGAAATCGGCATGTACTAGTCACCCATGGTATAGAAAAACCATATGAGTTGATGAAATTAAACTATGATCAGGCTCTTCAGCTGTTTAGTTTGAATGCCTTCAGGAAATATGAGCCGGAAGAAGATTATGCAGAGCTCTCTAAGTGTTTCGTTAGCTATGCCAGAGGTCTTCCTTTAGCTCTTGAAACTTTGGGGTCCTTCTTGTATAAAAGAAGTCTGGGTGCATGGGGTTCTGCATTGGAAAAACTACGGAATACTCCCAACAGAAGCGTTTTTGATTTGCTAAAAGTAAGTTATGATGGACTTGATGAGATGGAGAAGAAAATTTTTCTGGACATTGCATGTTTCCACAGGCTGTACTGCAATGAGTTTATCATTGAACAAGTATACAGTTCTGACCCTTCCAATCGTATTACAATAGATGTTCTTGCTGAGAAATCTCTCATAACTATTTACTCAGACAACCAAATAGGTATGCATGATTTGATACAAGAAATGGGATGCGAAATTGTTCGCCAAGAGTCTTATGAAGAGCCTGGTGGACGCAGTCGGTTGTGGCATCGCAACGACATATTTCATGTATTCACAAAGAATACGGGAACAGAAGCCATTGAAGGCATATTGTTAGACTTGTCTGAATTAGAAGAGGCAGATTGGAATCTTGAAGCCTTCTCTAAAATGTGTAGACTAAAGCTGCTCTACATTGATAATTTAAAGCTTTCTCTTGGCCCCATATATCTTCCTAATGCCTTGAGATTTCTGAAATGGAGTTGGTATCCTTCAAAATCTCTCCCACCAGGTTTTCAACCGGATGAGCTTACTGAACTTAGCTTGGTTCATAGCAATATTGATCACCTCTGGAATGGAATAAAATACTTGGGCAAGTTGAAATATATCAATCTTAGTTACTCTATAGACTTGAGAAGGACCCCGGATTTCACAGGTATTCAAAACCTTGAACAGTTGGTTCTTGAAGGTTGTGTGAATTTAGTTAAGATTCATCCATCCATTGCATTTCTCAAGAGACTTAAAATTTTGAACTTTAGAAACTGCGAAAGTATTAAGTGTCTCCCAAGTAAATTAGAAATGGAGTCTCTTGAAACATTTGATGTATCTGGCTGCTCAAATCTGAAAATGATTCCAGAATTTGTGGGGAAAAGTCTTGAGAGTTTGGTTCTTGAAGGTTGTACGAATTTAGTTGATATTCATCCATCCATTGCATTTCTCAATAGACTCAAAAGTTTGAACCTTAGAAACTGCAGAAGTATTAAGAGTCTCCCAAGTGAAGTAGAAATGGAATCTCTTGAAACATTTGATGTATCTGGCTGCTCAAGACTGAAAATGATTCCAGAATTTGTGGGGCAAATGAAACGATTATCAAAGCTTTCTTTAAGTGGGACTGCAGTTGAGAAACTGCCTTCATCAATTGAGCGCTTCAGTGAGAGTTTGGAGGAGCTAGATTTGAGTGGAATTGTTACAAGAGAGCCACCCTGCTCCCTTTTTCTCAAGAGAAATGTCAATGACAAACGCCCAAGATCATGGTACTCATTGCTCCCTTCTGGCTTATTTCCAAGAAAGAGTCCTCTGTTAGCTTCTTTGAAGCATTTGTCTTCATTGACGAGATTAAATCTGAAGGACTGTAATCTCAGTGAAGGAGAAATTCCCAATGATATTGGTTCTCTGTCTTCCTTAGAGTACTTGGATCTCGGAGGAAACAATTTTGTCAGCCTTCCTGCAAGCATTCAGTTGCTTTCTAAGCTTAAATCGATCTATGTGGAGAATTGCAAAAGGCTCCAACAATTGCCAGACCTTCCATCAAATGAAGAGTTATATCTAAGATCGGATAATTGTACTTCCTTAGAAGTGTTTCCAGATCCTCCAGATTTAGGCAGATTATCAAAATTTGGGCTCAATTGCACCAATTGCACGAGCACGGTCGGTAATCAAGATTCTAGTTATTACTTATATTCAGTGCTAAAGCGGTTGCTGGAGGAAACCCCTTGTTCTTTTGAGTATTTCCGTTTCGTAATTCCTGGAAGTGAAATTTTGGAGTGGTTCAATAATCAAAGTGTGGGAAACTCGGTAACTCAGAGGTTTCCTTTGTATGGATGTAATAGCAACTGGATTGGTGTCGCTGTATGTGCTCTACTTGTACCTCACGACAATCCGTTTGCCGTTCCTGAGGGCCCTACTTTATATCCTGATGAAAGTTTAATTATATGTCTATGGCGTGGATACGGTTTTGGCGTGAAAGTTGTTGCTTACAGCGTAAAACCAATTGTTTCAGATCACCTTTTCGTAGTTGTTTTAGGCAGTCATTTATTAAAACCGAAGAATTGTCTAGAGGACACATGCAATCAGCAGGTTAGGTTTGACCTCGTAGTCTCCCGAGCTGTAGGAAACAACAGATGCATAAAGGTGAAGAAATGTGGGGCCCGTGCACTGTACAAGCATGACATGGAAGAGCTGATTAGTAAAATGAACCAAACCAAGAGCAGCGTTTCTCGTTGCAAGACTTTGGATTTTGATTTTGGCAAATCAGCATATGAGCAAGGTGGTGTCATCGTTAAGGGAAGACGAGAGGCAACAAGCGGAAGTGGTGGCTCTGACGACGAATATTTCTCTGCAGAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

2308

Amino Acids

263.06

Weight (kDa)

5.68

Isoelectric Point (pI)

41.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 18 - 198 3.1e-56 TIR domain
TIR_2 PF13676 21 - 117 4e-16 TIR domain
NB-ARC PF00931 201 - 370 2.5e-21 NB-ARC domain
NACHT PF05729 222 - 363 8.6e-06 NACHT domain
WHD_ROQ1 PF23282 438 - 507 1.4e-11 Disease resistance protein Roq1-like, winged-helix domain
LRR_13 PF23286 698 - 872 1.1e-08 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 793 - 866 5e-08 Leucine-rich repeat region
C-JID PF20160 936 - 1079 2e-07 C-JID domain
TIR PF01582 1114 - 1294 3.3e-56 TIR domain
TIR_2 PF13676 1117 - 1213 3e-15 TIR domain
NB-ARC PF00931 1306 - 1466 2.5e-21 NB-ARC domain
WHD_ROQ1 PF23282 1534 - 1605 6.2e-14 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 1817 - 1921 6.8e-08 Leucine-rich repeat region
LRR_13 PF23286 1863 - 2056 1.6e-09 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 1961 - 2069 1.2e-09 Leucine-rich repeat region
C-JID PF20160 2107 - 2251 3.9e-08 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17680 AT5G17680
fragaria_vesca FvH4_1g04740 FvH4_1g04740 FvH4_1g04740 FvH4_1g07010 FvH4_1g07020 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11580 FvH4_1g17862 FvH4_1g22370 FvH4_1g22372 FvH4_1g22377 FvH4_1g22512 FvH4_2g00540 FvH4_2g00541 FvH4_2g00550 FvH4_2g00950 FvH4_2g14320 FvH4_2g14320 FvH4_2g14321 FvH4_3g33030 FvH4_3g33030 FvH4_3g33030 FvH4_3g35620 FvH4_3g35630 FvH4_3g36130 FvH4_3g36131 FvH4_3g36140 FvH4_5g02251 FvH4_6g04060 FvH4_6g04250 FvH4_6g04250 FvH4_6g04250 FvH4_6g04350 FvH4_6g04730 FvH4_6g04730 FvH4_6g05490 FvH4_6g05610 FvH4_6g05610 FvH4_7g12160 FvH4_7g12160 FvH4_7g12160 FvH4_7g21060 FvH4_7g21060 FvH4_7g21060 FvH4_7g21070 FvH4_7g21140 FvH4_7g21140 FvH4_7g21140 FvH4_7g21140 FvH4_7g21140 FvH4_7g21140 FvH4_7g21150 FvH4_7g21170 FvH4_7g21170 FvH4_7g21171 FvH4_7g21172 FvH4_7g21180 FvH4_7g21201 FvH4_7g21201 FvH4_7g21230 FvH4_7g21230 FvH4_7g21230 FvH4_7g28631 FvH4_7g32440 FvH4_7g32460 FvH4_7g32464 FvH4_7g32470 FvH4_7g32480 FvH4_7g32710 FvH4_7g32720 FvH4_7g32740 FvH4_7g32740 FvH4_7g32740 FvH4_7g32760 FvH4_7g33140
malus_domestica MD00G1125900.v1.1 MD00G1126000.v1.1 MD00G1126100.v1.1 MD04G1054900.v1.1 MD05G1007000.v1.1 MD05G1018900.v1.1 MD05G1019700.v1.1 MD05G1020000.v1.1 MD05G1020100.v1.1 MD05G1022400.v1.1 MD05G1022500.v1.1 MD05G1022600.v1.1 MD05G1022800.v1.1 MD05G1028700.v1.1 MD05G1100200.v1.1 MD08G1021900.v1.1 MD10G1006500.v1.1 MD10G1006900.v1.1 MD10G1007200.v1.1 MD10G1007600.v1.1 MD10G1015300.v1.1 MD10G1018400.v1.1 MD10G1018500.v1.1 MD10G1018900.v1.1 MD10G1019200.v1.1 MD10G1019700.v1.1 MD10G1020000.v1.1 MD10G1020100.v1.1 MD10G1020900.v1.1 MD10G1021000.v1.1 MD10G1034300.v1.1 MD10G1034400.v1.1 MD10G1034700.v1.1 MD10G1034800.v1.1 MD10G1035000.v1.1 MD10G1035400.v1.1 MD10G1232400.v1.1 MD15G1377300.v1.1 MD15G1377400.v1.1
prunus_persica Prupe.1G165300_v2.0.a1 Prupe.1G165300_v2.0.a1 Prupe.1G523900_v2.0.a1 Prupe.1G524000_v2.0.a1 Prupe.1G526300_v2.0.a1 Prupe.2G059000_v2.0.a1 Prupe.2G059000_v2.0.a1 Prupe.2G059000_v2.0.a1 Prupe.2G059000_v2.0.a1 Prupe.3G169500_v2.0.a1 Prupe.6G109800_v2.0.a1 Prupe.7G026100_v2.0.a1 Prupe.7G037000_v2.0.a1 Prupe.7G037000_v2.0.a1 Prupe.7G037600_v2.0.a1 Prupe.8G005100_v2.0.a1 Prupe.8G005300_v2.0.a1 Prupe.8G021700_v2.0.a1 Prupe.8G022800_v2.0.a1 Prupe.8G023100_v2.0.a1 Prupe.8G023200_v2.0.a1 Prupe.8G023200_v2.0.a1 Prupe.8G023300_v2.0.a1 Prupe.8G023500_v2.0.a1 Prupe.8G023600_v2.0.a1 Prupe.8G023700_v2.0.a1 Prupe.8G023700_v2.0.a1 Prupe.8G023700_v2.0.a1 Prupe.8G023800_v2.0.a1 Prupe.8G023800_v2.0.a1 Prupe.8G023800_v2.0.a1 Prupe.8G023900_v2.0.a1 Prupe.8G026500_v2.0.a1 Prupe.8G026500_v2.0.a1 Prupe.8G026700_v2.0.a1 Prupe.8G026700_v2.0.a1 Prupe.8G026800_v2.0.a1 Prupe.8G026800_v2.0.a1 Prupe.8G026800_v2.0.a1 Prupe.8G026800_v2.0.a1 Prupe.8G027000_v2.0.a1 Prupe.8G027100_v2.0.a1 Prupe.8G027300_v2.0.a1 Prupe.8G027300_v2.0.a1 Prupe.8G027300_v2.0.a1 Prupe.8G032000_v2.0.a1 Prupe.8G034700_v2.0.a1 Prupe.8G046500_v2.0.a1 Prupe.8G046700_v2.0.a1 Prupe.8G056700_v2.0.a1 Prupe.8G056700_v2.0.a1 Prupe.8G056700_v2.0.a1
pyrus_communis pycom05g01130 pycom05g01150 pycom05g01160 pycom05g01330 pycom05g01340 pycom05g01350 pycom05g01360 pycom05g01390 pycom05g01400 pycom05g01420 pycom05g01430 pycom10g00470 pycom10g00970 pycom10g00980 pycom10g00990 pycom10g01000 pycom10g01340 pycom10g01350 pycom10g01360 pycom10g01390 pycom10g01400 pycom10g01410 pycom10g01420 pycom10g01430 pycom10g02280 pycom10g02300 pycom10g02310 pycom10g02330 pycom10g02340 pycom10g02370 pycom10g02390 pycom10g02400 pycom12g00770 pycom15g33690 pycom15g33720 pycom15g33740 pycom15g33750 pycom15g33800
rosa_chinensis RchiOBHm_Chr1g0340831 RchiOBHm_Chr1g0365481 RchiOBHm_Chr1g0365531 RchiOBHm_Chr1g0365541 RchiOBHm_Chr1g0365551 RchiOBHm_Chr1g0365561 RchiOBHm_Chr1g0365641 RchiOBHm_Chr1g0382021 RchiOBHm_Chr1g0382041 RchiOBHm_Chr1g0382221 RchiOBHm_Chr1g0382261 RchiOBHm_Chr1g0382271 RchiOBHm_Chr1g0382281 RchiOBHm_Chr1g0382321 RchiOBHm_Chr3g0465111 RchiOBHm_Chr3g0481881 RchiOBHm_Chr3g0481891 RchiOBHm_Chr3g0481981 RchiOBHm_Chr3g0482041 RchiOBHm_Chr5g0055581 RchiOBHm_Chr5g0060381 RchiOBHm_Chr5g0061111 RchiOBHm_Chr5g0063811 RchiOBHm_Chr5g0064561 RchiOBHm_Chr5g0064571 RchiOBHm_Chr5g0064661 RchiOBHm_Chr5g0064701 RchiOBHm_Chr5g0064731 RchiOBHm_Chr5g0064871 RchiOBHm_Chr6g0245321 RchiOBHm_Chr6g0245331 RchiOBHm_Chr6g0245341 RchiOBHm_Chr6g0245481 RchiOBHm_Chr6g0245501 RchiOBHm_Chr6g0245551 RchiOBHm_Chr6g0246391 RchiOBHm_Chr6g0246501 RchiOBHm_Chr6g0246541 RchiOBHm_Chr6g0246601 RchiOBHm_Chr6g0246671 RchiOBHm_Chr6g0246721 RchiOBHm_Chr6g0246751 RchiOBHm_Chr6g0246861 RchiOBHm_Chr6g0246881 RchiOBHm_Chr6g0246891 RchiOBHm_Chr6g0249221 RchiOBHm_Chr6g0249691 RchiOBHm_Chr6g0249721 RchiOBHm_Chr6g0249731 RchiOBHm_Chr6g0249751 RchiOBHm_Chr6g0249841 RchiOBHm_Chr6g0249881 RchiOBHm_Chr6g0249921 RchiOBHm_Chr6g0249931 RchiOBHm_Chr6g0249951 RchiOBHm_Chr6g0250011 RchiOBHm_Chr6g0250021 RchiOBHm_Chr6g0250081 RchiOBHm_Chr6g0250091 RchiOBHm_Chr6g0250131 RchiOBHm_Chr6g0250161 RchiOBHm_Chr6g0250201 RchiOBHm_Chr6g0250241 RchiOBHm_Chr6g0250291 RchiOBHm_Chr6g0250301 RchiOBHm_Chr6g0250371 RchiOBHm_Chr6g0250771 RchiOBHm_Chr6g0250981 RchiOBHm_Chr6g0251301 RchiOBHm_Chr6g0251321 RchiOBHm_Chr6g0251341 RchiOBHm_Chr6g0251441 RchiOBHm_Chr6g0251471 RchiOBHm_Chr6g0272741 RchiOBHm_Chr6g0276581 RchiOBHm_Chr6g0276591 RchiOBHm_Chr6g0276631 RchiOBHm_Chr6g0284581 RchiOBHm_Chr6g0284641 RchiOBHm_Chr6g0285091 RchiOBHm_Chr7g0217981
rosa_laevigata RLG00000002427 RLG00000003507 RLG00000008496 RLG00000012678 RLG00000012735 RLG00000012736 RLG00000013083 RLG00000013084 RLG00000013384 RLG00000013386 RLG00000013660 RLG00000015037 RLG00000015242 RLG00000015253 RLG00000015255 RLG00000015256 RLG00000015259 RLG00000015307 RLG00000015465 RLG00000015466 RLG00000015504 RLG00000015506 RLG00000015507 RLG00000015510 RLG00000015513 RLG00000015544 RLG00000015545 RLG00000015549 RLG00000015550 RLG00000015552 RLG00000016855 RLG00000016858 RLG00000016859 RLG00000018281 RLG00000018283 RLG00000022622 RLG00000023379 RLG00000023937 RLG00000024655 RLG00000026187 RLG00000026189 RLG00000026190 RLG00000026191 RLG00000026192 RLG00000027420 RLG00000027421 RLG00000027661 RLG00000028903 RLG00000028904 RLG00000030248 RLG00000035359 RLG00000035360 RLG00000035361 RLG00000035429 RLG00000035456 RLG00000035679 RLG00000035680 RLG00000035681 RLG00000035735 RLG00000035738 RLG00000035844 RLG00000036364
rosa_multiflora Rmu_co8335069.1_g000001 Rmu_co8396115.1_g000001 Rmu_co8448557.1_g000001 Rmu_co8510855.1_g000001 Rmu_sc0000110.1_g000004 Rmu_sc0000110.1_g000007 Rmu_sc0000110.1_g000018 Rmu_sc0000110.1_g000019 Rmu_sc0000110.1_g000022 Rmu_sc0000110.1_g000023 Rmu_sc0000110.1_g000033 Rmu_sc0000110.1_g000037 Rmu_sc0000110.1_g000039 Rmu_sc0000276.1_g000031 Rmu_sc0000276.1_g000034 Rmu_sc0000411.1_g000006 Rmu_sc0000411.1_g000007 Rmu_sc0000452.1_g000027 Rmu_sc0000471.1_g000009 Rmu_sc0000507.1_g000020 Rmu_sc0000694.1_g000018 Rmu_sc0000701.1_g000002 Rmu_sc0000701.1_g000009 Rmu_sc0000701.1_g000010 Rmu_sc0000704.1_g000001 Rmu_sc0000704.1_g000042 Rmu_sc0000704.1_g000043 Rmu_sc0000969.1_g000002 Rmu_sc0001001.1_g000003 Rmu_sc0001066.1_g000004 Rmu_sc0001066.1_g000019 Rmu_sc0001209.1_g000023 Rmu_sc0001209.1_g000040 Rmu_sc0001209.1_g000043 Rmu_sc0001237.1_g000018 Rmu_sc0001246.1_g000016 Rmu_sc0001293.1_g000008 Rmu_sc0001293.1_g000011 Rmu_sc0001293.1_g000022 Rmu_sc0001293.1_g000023 Rmu_sc0001373.1_g000014 Rmu_sc0001382.1_g000001 Rmu_sc0001738.1_g000024 Rmu_sc0002025.1_g000009 Rmu_sc0002025.1_g000012 Rmu_sc0002025.1_g000013 Rmu_sc0002093.1_g000004 Rmu_sc0002202.1_g000008 Rmu_sc0002202.1_g000010 Rmu_sc0002202.1_g000011 Rmu_sc0002202.1_g000018 Rmu_sc0002406.1_g000014 Rmu_sc0002478.1_g000003 Rmu_sc0002535.1_g000042 Rmu_sc0002587.1_g000021 Rmu_sc0002587.1_g000023 Rmu_sc0002587.1_g000028 Rmu_sc0002587.1_g000039 Rmu_sc0002587.1_g000044 Rmu_sc0002587.1_g000048 Rmu_sc0002587.1_g000049 Rmu_sc0002793.1_g000005 Rmu_sc0003060.1_g000003 Rmu_sc0003060.1_g000004 Rmu_sc0003060.1_g000005 Rmu_sc0003131.1_g000001 Rmu_sc0003131.1_g000032 Rmu_sc0003255.1_g000009 Rmu_sc0003255.1_g000017 Rmu_sc0003270.1_g000028 Rmu_sc0003293.1_g000004 Rmu_sc0003293.1_g000008 Rmu_sc0003293.1_g000010 Rmu_sc0003352.1_g000009 Rmu_sc0003352.1_g000012 Rmu_sc0003386.1_g000012 Rmu_sc0003387.1_g000003 Rmu_sc0003387.1_g000007 Rmu_sc0003665.1_g000002 Rmu_sc0003811.1_g000001 Rmu_sc0004049.1_g000001 Rmu_sc0004191.1_g000039 Rmu_sc0004691.1_g000008 Rmu_sc0005257.1_g000014 Rmu_sc0005257.1_g000020 Rmu_sc0005685.1_g000005 Rmu_sc0006032.1_g000010 Rmu_sc0006638.1_g000016 Rmu_sc0006878.1_g000005 Rmu_sc0007049.1_g000005 Rmu_sc0007049.1_g000011 Rmu_sc0007049.1_g000012 Rmu_sc0007049.1_g000013 Rmu_sc0007049.1_g000014 Rmu_sc0007383.1_g000001 Rmu_sc0007383.1_g000005 Rmu_sc0007383.1_g000012 Rmu_sc0007558.1_g000003 Rmu_sc0007558.1_g000005 Rmu_sc0007722.1_g000001 Rmu_sc0008209.1_g000002 Rmu_sc0008209.1_g000008 Rmu_sc0008242.1_g000013 Rmu_sc0008965.1_g000001 Rmu_sc0009002.1_g000002 Rmu_sc0009002.1_g000006 Rmu_sc0009002.1_g000007 Rmu_sc0009002.1_g000010 Rmu_sc0009002.1_g000011 Rmu_sc0009227.1_g000011 Rmu_sc0009369.1_g000008 Rmu_sc0009380.1_g000013 Rmu_sc0009451.1_g000011 Rmu_sc0009952.1_g000008 Rmu_sc0009991.1_g000004 Rmu_sc0010993.1_g000005 Rmu_sc0010993.1_g000006 Rmu_sc0012343.1_g000012 Rmu_sc0014236.1_g000002 Rmu_sc0014912.1_g000002 Rmu_sc0014912.1_g000003 Rmu_sc0019669.1_g000001 Rmu_sc0020903.1_g000007 Rmu_sc0021230.1_g000001 Rmu_sc0022147.1_g000001 Rmu_sc0028629.1_g000002 Rmu_sc0031029.1_g000001 Rmu_sc0038922.1_g000001 Rmu_sc0039683.1_g000001 Rmu_sc0039712.1_g000001 Rmu_sc0043027.1_g000001 Rmu_ssc0000009.1_g000002 Rmu_ssc0000009.1_g000004 Rmu_ssc0000309.1_g000010
rosa_roxburghii Rroxscaffold_1G00014850 Rroxscaffold_1G00016420 Rroxscaffold_1G00016430 Rroxscaffold_1G00016970 Rroxscaffold_1G00016980 Rroxscaffold_1G00017020 Rroxscaffold_2G00103000 Rroxscaffold_2G00103010 Rroxscaffold_2G00121260 Rroxscaffold_2G00127090 Rroxscaffold_2G00127120 Rroxscaffold_2G00143350 Rroxscaffold_2G00143360 Rroxscaffold_3G00218090 Rroxscaffold_3G00232940 Rroxscaffold_3G00241540 Rroxscaffold_3G00241550 Rroxscaffold_4G00278190 Rroxscaffold_4G00278220 Rroxscaffold_4G00278240 Rroxscaffold_4G00278260 Rroxscaffold_4G00291120 Rroxscaffold_4G00291140 Rroxscaffold_4G00291150 Rroxscaffold_4G00291160 Rroxscaffold_4G00291180 Rroxscaffold_4G00291220 Rroxscaffold_4G00294350 Rroxscaffold_4G00304090 Rroxscaffold_4G00309820 Rroxscaffold_4G00314470 Rroxscaffold_6G00392280 Rroxscaffold_6G00399770 Rroxscaffold_6G00399780 Rroxscaffold_6G00399800 Rroxscaffold_6G00400110 Rroxscaffold_6G00400130 Rroxscaffold_6G00415240 Rroxscaffold_7G00183750 Rroxscaffold_7G00184040 Rroxscaffold_7G00184570 Rroxscaffold_7G00184580 Rroxscaffold_7G00192150 Rroxscaffold_7G00192460 Rroxscaffold_7G00196030 Rroxscaffold_7G00211080 Rroxscaffold_7G00214480 Rroxscaffold_7G00214490 Rroxscaffold_7G00214570 Rroxscaffold_7G00214580 Rroxscaffold_7G00214590 Rroxscaffold_7G00214610 Rroxscaffold_7G00214620 Rroxscaffold_7G00214790 Rroxscaffold_7G00216630 Rroxscaffold_7G00216640 Rroxscaffold_7G00216670 Rroxscaffold_7G00216680 Rroxscaffold_7G00216690 Rroxscaffold_7G00216730 Rroxscaffold_7G00216770 Rroxscaffold_7G00216780 Rroxscaffold_7G00216820 Rroxscaffold_7G00216830 Rroxscaffold_7G00217280 Rroxscaffold_7G00217310 Rroxscaffold_7G00217320 Rroxscaffold_7G00217330
rosa_rugosa Rorug01G0040400 Rorug01G0173300 Rorug01G0173400 Rorug01G0296100 Rorug01G0296200 Rorug01G0296300 Rorug01G0296400 Rorug01G0322300 Rorug01G0432900 Rorug01G0433100 Rorug01G0433200 Rorug01G0433500 Rorug02G0054900 Rorug02G0077900 Rorug02G0078000 Rorug02G0078100 Rorug02G0207300 Rorug02G0242200 Rorug02G0242300 Rorug03G0075500 Rorug03G0075500 Rorug03G0194300 Rorug05G0329100 Rorug05G0329300 Rorug05G0360000 Rorug05G0360000 Rorug05G0360300 Rorug05G0360400.1 Rorug05G0360500 Rorug05G0364200 Rorug05G0366200 Rorug05G0366300 Rorug05G0366400 Rorug05G0366600 Rorug05G0376400 Rorug05G0376500 Rorug05G0421100 Rorug05G0494600 Rorug05G0494800 Rorug05G0494900 Rorug05G0495100 Rorug05G0495200 Rorug05G0495900 Rorug05G0498200 Rorug05G0498200 Rorug05G0498300.1 Rorug05G0499100 Rorug05G0501700 Rorug05G0501800 Rorug05G0501900 Rorug05G0513800 Rorug05G0514100 Rorug05G0514200 Rorug05G0514200 Rorug05G0514500 Rorug05G0519200 Rorug05G0519300.1 Rorug05G0519400 Rorug05G0519400 Rorug05G0520600 Rorug05G0520700 Rorug05G0520800 Rorug05G0521300 Rorug05G0521400 Rorug05G0521500 Rorug05G0550800 Rorug06G0070400 Rorug06G0070500 Rorug06G0070600 Rorug06G0099500 Rorug06G0099600 Rorug06G0102100 Rorug06G0102200 Rorug06G0102300 Rorug06G0102300 Rorug06G0102400 Rorug06G0162500 Rorug06G0164500 Rorug06G0164600 Rorug06G0164800 Rorug06G0170600 Rorug07G0172900 Rorug07G0172900 Rorug07G0172900 Rorug07G0173000
rosa_samantha Rh1BG156400 Rh1BG156500 Rh1BG156600 Rh1BG292400 Rh1BG413500 Rh1BG413800 Rh1BG414100 Rh1BG414200 Rh1BG414400 Rh1CG059400 Rh1CG309000 Rh1CG428300 Rh1CG428400 Rh2BG129800 Rh2BG273700 Rh2CG131000 Rh2DG131300 Rh3AG245200 Rh3AG245600 Rh3BG139100 Rh3BG280400 Rh3BG280500 Rh3CG141200 Rh3CG149500 Rh3CG275400 Rh3CG275800 Rh3CG276500 Rh3CG276800 Rh3DG140400 Rh3DG272100 Rh3DG272300 Rh3DG272400 Rh3DG272700 Rh3DG272800 Rh3DG272900 Rh5AG099100 Rh5AG424200 Rh5AG435200 Rh5BG411900 Rh5BG439500 Rh5CG108000 Rh5CG436900 Rh5CG457800 Rh5CG462200 Rh5CG462300 Rh6AG033600 Rh6AG186700 Rh6BG190100 Rh6BG215300 Rh6BG217600 Rh6BG217800 Rh6CG188800 Rh6CG284800 Rh6DG003400 Rh6DG008400 Rh6DG008700 Rh6DG008800 Rh6DG009100 Rh6DG009400 Rh6DG025100 Rh6DG180300 Rh6DG209700 Rh6DG210100 Rh6DG272100 Rh6DG272300 Rh6DG273000 Rh7BG305400
rosa_wichuraiana Rw0G010970 Rw0G011460 Rw0G017090 Rw0G023140 Rw1G007890 Rw1G010200 Rw1G015630 Rw1G015640 Rw1G029350 Rw1G029370 Rw1G029380 Rw1G029390 Rw1G029400 Rw1G041290 Rw1G041560 Rw2G009760 Rw2G009770 Rw2G020640 Rw2G021670 Rw2G021690 Rw2G024060 Rw3G011380 Rw3G021890 Rw3G021910 Rw3G021940 Rw3G021950 Rw3G021960 Rw5G037070 Rw5G037080 Rw5G037090 Rw5G039330 Rw5G039890 Rw5G039900 Rw5G039920 Rw5G040740 Rw6G000500 Rw6G000510 Rw6G000520 Rw6G000550 Rw6G000570 Rw6G000580 Rw6G000610 Rw6G000820 Rw6G001070 Rw6G001090 Rw6G001100 Rw6G001170 Rw6G001180 Rw6G001260 Rw6G001270 Rw6G001280 Rw6G001300 Rw6G002450 Rw6G002470 Rw6G002500 Rw6G002830 Rw6G002870 Rw6G003000 Rw6G003080 Rw6G016110 Rw6G018400 Rw6G018590 Rw6G018610 Rw6G023840 Rw6G023880 Rw6G024250 Rw6G024260 Rw7G026620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2804
AarI CACCTGC 1 cut(s) 3184
AasI GACNNNNNNGTC 1 cut(s) 6671
AatII GACGTC 2 cut(s) 2405, 3351
Acc36I ACCTGC 2 cut(s) 3184, 6643
AccI GTMKAC 3 cut(s) 2674, 4677, 4975
AccIII TCCGGA 1 cut(s) 3478
AciI CCGC 6 cut(s) 227, 2758, 3379, 3940, 6271, 6882
AclWI GGATC 9 cut(s) 933, 1204, 2493, 2972, 3626, 3639, 4221, 6000, 6158
AcvI CACGTG 3 cut(s) 264, 1582, 3132
AcyI GRCGYC 2 cut(s) 2402, 3348
AdeI CACNNNGTG 2 cut(s) 267, 3555
AfeI AGCGCT 2 cut(s) 2228, 5723
AfiI CCNNNNNNNGG 3 cut(s) 4296, 6176, 6395
AflII CTTAAG 1 cut(s) 2300
AflIII ACRYGT 3 cut(s) 60, 1581, 3129
AgeI ACCGGT 1 cut(s) 3320
AhdI GACNNNNNGTC 1 cut(s) 2947
AhlI ACTAGT 2 cut(s) 706, 4306
AjiI CACGTC 2 cut(s) 61, 1505
AjnI CCWGG 8 cut(s) 218, 1537, 1798, 2809, 3506, 4825, 5086, 6322
AjuI GAANNNNNNNTTGG 8 cut(s) 238, 270, 393, 425, 3526, 3558, 3681, 3713
AleI CACNNNNGTG 1 cut(s) 2714
Alw21I GWGCWC 9 cut(s) 14, 198, 2711, 2926, 3486, 4428, 6224, 6436, 6733
Alw44I GTGCAC 1 cut(s) 6729
AlwI GGATC 9 cut(s) 933, 1204, 2493, 2972, 3626, 3639, 4221, 6000, 6158
Ama87I CYCGRG 1 cut(s) 6678
Aor13HI TCCGGA 1 cut(s) 3478
Aor51HI AGCGCT 2 cut(s) 2228, 5723
AoxI GGCC 5 cut(s) 1729, 3210, 5017, 6475, 6723
ApaI GGGCCC 2 cut(s) 6479, 6727
ApaLI GTGCAC 1 cut(s) 6729
ArsI GACNNNNNNTTYG 2 cut(s) 6443, 6475
AsiGI ACCGGT 1 cut(s) 3320
Asp700I GAANNNNTTC 5 cut(s) 1512, 4125, 4388, 4800, 6156
AspLEI GCGC 3 cut(s) 1548, 2229, 5724
AsuC2I CCSGG 1 cut(s) 5222
AsuHPI GGTGA 9 cut(s) 1847, 2345, 2872, 3062, 3208, 4303, 5135, 6572, 6721
AsuII TTCGAA 1 cut(s) 1516
AvaI CYCGRG 1 cut(s) 6678
AvaII GGWCC 3 cut(s) 1929, 4485, 5217
AxyI CCTNAGG 1 cut(s) 6471
BaeGI GKGCMC 3 cut(s) 6479, 6727, 6733
BamHI GGATCC 1 cut(s) 3631
BanII GRGCYC 6 cut(s) 198, 3486, 4428, 6201, 6479, 6727
BarI GAAGNNNNNNTAC 4 cut(s) 822, 854, 1685, 1717
BauI CACGAG 1 cut(s) 6217
BbrPI CACGTG 3 cut(s) 264, 1582, 3132
Bbv12I GWGCWC 9 cut(s) 14, 198, 2711, 2926, 3486, 4428, 6224, 6436, 6733
BceAI ACGGC 3 cut(s) 331, 2939, 6449
BcgI CGANNNNNNTGC 2 cut(s) 1506, 1540
BciT130I CCWGG 8 cut(s) 220, 1539, 1800, 2811, 3508, 4827, 5088, 6324
BciVI GTATCC 5 cut(s) 592, 1788, 3008, 5076, 6518
BclI TGATCA 5 cut(s) 727, 1852, 3246, 4357, 5140
BcnI CCSGG 1 cut(s) 5222
BcuI ACTAGT 2 cut(s) 706, 4306
BfmI CTRYAG 7 cut(s) 3171, 4085, 5202, 5548, 5691, 6684, 6915
BfoI RGCGCY 2 cut(s) 2230, 5725
BfrI CTTAAG 1 cut(s) 2300
BfuAI ACCTGC 2 cut(s) 3184, 6643
BfuI GTATCC 5 cut(s) 592, 1788, 3008, 5076, 6518
BglI GCCNNNNNGGC 1 cut(s) 1543
BglII AGATCT 1 cut(s) 720
BmcAI AGTACT 2 cut(s) 3116, 5987
Bme1390I CCNGG 9 cut(s) 220, 1539, 1800, 2811, 3508, 4827, 5088, 5222, 6324
Bme18I GGWCC 3 cut(s) 1929, 4485, 5217
BmeRI GACNNNNNGTC 1 cut(s) 2947
BmeT110I CYCGRG 1 cut(s) 6678
BmgBI CACGTC 2 cut(s) 61, 1505
BmrFI CCNGG 9 cut(s) 220, 1539, 1800, 2811, 3508, 4827, 5088, 5222, 6324
BplI GAGNNNNNCTC 6 cut(s) 185, 217, 707, 739, 1708, 1740
BpmI CTGGAG 6 cut(s) 629, 1064, 1185, 3143, 6153, 6299
Bpu10I CCTNAGC 1 cut(s) 1177
Bpu14I TTCGAA 1 cut(s) 1516
BpuMI CCSGG 1 cut(s) 5222
Bsa29I ATCGAT 2 cut(s) 1899, 6056
BsaAI YACGTR 3 cut(s) 264, 1582, 3132
BsaBI GATNNNNATC 6 cut(s) 924, 1659, 2001, 4212, 4947, 5496
BsaHI GRCGYC 2 cut(s) 2402, 3348
BsaJI CCNNGG 9 cut(s) 47, 133, 781, 948, 2339, 2472, 3335, 4315, 5220
BsaWI WCCGGW 4 cut(s) 1810, 3320, 3478, 5098
BsaXI ACNNNNNCTCC 2 cut(s) 3116, 3146
Bsc4I CCNNNNNNNGG 3 cut(s) 4296, 6176, 6395
Bse118I RCCGGY 1 cut(s) 3320
Bse1I ACTGG 4 cut(s) 37, 945, 4259, 6416
Bse21I CCTNAGG 1 cut(s) 6471
Bse3DI GCAATG 5 cut(s) 4626, 4660, 5298, 5505, 5837
Bse8I GATNNNNATC 6 cut(s) 924, 1659, 2001, 4212, 4947, 5496
BseAI TCCGGA 1 cut(s) 3478
BseBI CCWGG 8 cut(s) 220, 1539, 1800, 2811, 3508, 4827, 5088, 6324
BseCI ATCGAT 2 cut(s) 1899, 6056
BseDI CCNNGG 9 cut(s) 47, 133, 781, 948, 2339, 2472, 3335, 4315, 5220
BseJI GATNNNNATC 6 cut(s) 924, 1659, 2001, 4212, 4947, 5496
BseLI CCNNNNNNNGG 3 cut(s) 4296, 6176, 6395
BseMI GCAATG 5 cut(s) 4626, 4660, 5298, 5505, 5837
BseNI ACTGG 4 cut(s) 37, 945, 4259, 6416
BseRI GAGGAG 4 cut(s) 188, 994, 3476, 5756
BseSI GKGCMC 3 cut(s) 6479, 6727, 6733
BseYI CCCAGC 1 cut(s) 473
BsgI GTGCAG 1 cut(s) 2986
Bsh1285I CGRYCG 4 cut(s) 231, 2715, 3519, 6228
BshFI GGCC 5 cut(s) 1731, 3212, 5019, 6477, 6725
BshTI ACCGGT 1 cut(s) 3320
BshVI ATCGAT 2 cut(s) 1899, 6056
BsiEI CGRYCG 4 cut(s) 231, 2715, 3519, 6228
BsiHKAI GWGCWC 9 cut(s) 14, 198, 2711, 2926, 3486, 4428, 6224, 6436, 6733
BsiHKCI CYCGRG 1 cut(s) 6678
BsiSI CCGG 6 cut(s) 1811, 3321, 3479, 4406, 5099, 5222
BslFI GGGAC 7 cut(s) 328, 1515, 2206, 2867, 3455, 3616, 5701
BslI CCNNNNNNNGG 3 cut(s) 4296, 6176, 6395
BsmBI CGTCTC 1 cut(s) 354
BsmFI GGGAC 7 cut(s) 328, 1515, 2206, 2867, 3455, 3616, 5701
BsmI GAATGC 6 cut(s) 302, 1407, 2523, 3590, 4390, 6030
BsnI GGCC 5 cut(s) 1731, 3212, 5019, 6477, 6725
BsoBI CYCGRG 1 cut(s) 6678
Bsp119I TTCGAA 1 cut(s) 1516
Bsp120I GGGCCC 2 cut(s) 6475, 6723
Bsp13I TCCGGA 1 cut(s) 3478
Bsp1407I TGTACA 3 cut(s) 838, 3222, 6735
Bsp19I CCATGG 4 cut(s) 47, 781, 3335, 4315
BspACI CCGC 6 cut(s) 227, 2758, 3379, 3940, 6271, 6882
BspANI GGCC 5 cut(s) 1731, 3212, 5019, 6477, 6725
BspDI ATCGAT 2 cut(s) 1899, 6056
BspEI TCCGGA 1 cut(s) 3478
BspHI TCATGA 1 cut(s) 1587
BspMAI CTGCAG 3 cut(s) 5552, 5695, 6919
BspMI ACCTGC 2 cut(s) 3184, 6643
BspPI GGATC 9 cut(s) 933, 1204, 2493, 2972, 3626, 3639, 4221, 6000, 6158
BspQI GCTCTTC 5 cut(s) 1527, 3234, 4371, 4815, 6747
BspT104I TTCGAA 1 cut(s) 1516
BspTI CTTAAG 1 cut(s) 2300
BsrDI GCAATG 5 cut(s) 4626, 4660, 5298, 5505, 5837
BsrFI RCCGGY 1 cut(s) 3320
BsrGI TGTACA 3 cut(s) 838, 3222, 6735
BsrI ACTGG 4 cut(s) 37, 945, 4259, 6416
BssAI RCCGGY 1 cut(s) 3320
BssECI CCNNGG 9 cut(s) 47, 133, 781, 948, 2339, 2472, 3335, 4315, 5220
BssNAI GTATAC 1 cut(s) 4678
BssNI GRCGYC 2 cut(s) 2402, 3348
BssSI CACGAG 1 cut(s) 6217
BssT1I CCWWGG 7 cut(s) 47, 781, 948, 2339, 2472, 3335, 4315
Bst1107I GTATAC 1 cut(s) 4678
Bst2BI CACGAG 1 cut(s) 6217
Bst2UI CCWGG 8 cut(s) 220, 1539, 1800, 2811, 3508, 4827, 5088, 6324
BstACI GRCGYC 2 cut(s) 2402, 3348
BstAFI CTTAAG 1 cut(s) 2300
BstAPI GCANNNNNTGC 2 cut(s) 2700, 6213
BstAUI TGTACA 3 cut(s) 838, 3222, 6735
BstBAI YACGTR 3 cut(s) 264, 1582, 3132
BstBI TTCGAA 1 cut(s) 1516
BstC8I GCNNGC 7 cut(s) 531, 2521, 3191, 3560, 3763, 3819, 6028
BstDSI CCRYGG 4 cut(s) 47, 781, 3335, 4315
BstH2I RGCGCY 2 cut(s) 2230, 5725
BstHHI GCGC 3 cut(s) 1548, 2229, 5724
BstMCI CGRYCG 4 cut(s) 231, 2715, 3519, 6228
BstNI CCWGG 8 cut(s) 220, 1539, 1800, 2811, 3508, 4827, 5088, 6324
BstNSI RCATGY 5 cut(s) 1226, 1347, 4304, 4635, 6645
BstSCI CCNGG 9 cut(s) 218, 1537, 1798, 2809, 3506, 4825, 5086, 5220, 6322
BstSFI CTRYAG 7 cut(s) 3171, 4085, 5202, 5548, 5691, 6684, 6915
BstSLI GKGCMC 3 cut(s) 6479, 6727, 6733
BstX2I RGATCY 7 cut(s) 720, 1196, 2485, 2977, 3631, 5992, 6163
BstXI CCANNNNNNTGG 2 cut(s) 1227, 5829
BstYI RGATCY 7 cut(s) 720, 1196, 2485, 2977, 3631, 5992, 6163
BstZ17I GTATAC 1 cut(s) 4678
Bsu15I ATCGAT 2 cut(s) 1899, 6056
Bsu36I CCTNAGG 1 cut(s) 6471
BsuI GTATCC 5 cut(s) 592, 1788, 3008, 5076, 6518
BsuRI GGCC 5 cut(s) 1731, 3212, 5019, 6477, 6725
BsuTUI ATCGAT 2 cut(s) 1899, 6056
BtgI CCRYGG 4 cut(s) 47, 781, 3335, 4315
BtgZI GCGATG 2 cut(s) 1996, 4835
BtrI CACGTC 2 cut(s) 61, 1505
BtsI GCAGTG 4 cut(s) 134, 177, 1238, 3489
BveI ACCTGC 2 cut(s) 3184, 6643
Cac8I GCNNGC 7 cut(s) 531, 2521, 3191, 3560, 3763, 3819, 6028
CciI TCATGA 1 cut(s) 1587
CfoI GCGC 3 cut(s) 1548, 2229, 5724
Cfr10I RCCGGY 1 cut(s) 3320
ClaI ATCGAT 2 cut(s) 1899, 6056
CseI GACGC 1 cut(s) 4842
CsiI ACCWGGT 2 cut(s) 1798, 5086
CspAI ACCGGT 1 cut(s) 3320
CspCI CAANNNNNGTGG 2 cut(s) 3806, 3841
DraI TTTAAA 2 cut(s) 2382, 5004
DraIII CACNNNGTG 2 cut(s) 267, 3555
DrdI GACNNNNNNGTC 1 cut(s) 6671
DriI GACNNNNNGTC 1 cut(s) 2947
DseDI GACNNNNNNGTC 1 cut(s) 6671
Eam1105I GACNNNNNGTC 1 cut(s) 2947
Ecl136II GAGCTC 3 cut(s) 196, 3484, 4426
Eco130I CCWWGG 7 cut(s) 47, 781, 948, 2339, 2472, 3335, 4315
Eco24I GRGCYC 6 cut(s) 198, 3486, 4428, 6201, 6479, 6727
Eco47I GGWCC 3 cut(s) 1929, 4485, 5217
Eco47III AGCGCT 2 cut(s) 2228, 5723
Eco53kI GAGCTC 3 cut(s) 196, 3484, 4426
Eco72I CACGTG 3 cut(s) 264, 1582, 3132
Eco81I CCTNAGG 1 cut(s) 6471
Eco88I CYCGRG 1 cut(s) 6678
EcoICRI GAGCTC 3 cut(s) 196, 3484, 4426
EcoO109I RGGNCCY 7 cut(s) 1929, 3210, 4485, 5217, 6475, 6476, 6723
EcoRII CCWGG 8 cut(s) 218, 1537, 1798, 2809, 3506, 4825, 5086, 6322
EcoT14I CCWWGG 7 cut(s) 47, 781, 948, 2339, 2472, 3335, 4315
EcoT22I ATGCAT 5 cut(s) 302, 1228, 3590, 4770, 6704
EcoT38I GRGCYC 6 cut(s) 198, 3486, 4428, 6201, 6479, 6727
ErhI CCWWGG 7 cut(s) 47, 781, 948, 2339, 2472, 3335, 4315
Esp3I CGTCTC 1 cut(s) 354
FaqI GGGAC 7 cut(s) 328, 1515, 2206, 2867, 3455, 3616, 5701
FauI CCCGC 1 cut(s) 3386
FauNDI CATATG 2 cut(s) 4333, 6835
FbaI TGATCA 5 cut(s) 727, 1852, 3246, 4357, 5140
FblI GTMKAC 3 cut(s) 2674, 4677, 4975
FriOI GRGCYC 6 cut(s) 198, 3486, 4428, 6201, 6479, 6727
GlaI GCGC 3 cut(s) 1547, 2228, 5723
GsaI CCCAGC 1 cut(s) 477
GsuI CTGGAG 6 cut(s) 629, 1064, 1185, 3143, 6153, 6299
HaeII RGCGCY 2 cut(s) 2230, 5725
HaeIII GGCC 5 cut(s) 1731, 3212, 5019, 6477, 6725
HapII CCGG 6 cut(s) 1811, 3321, 3479, 4406, 5099, 5222
HgaI GACGC 1 cut(s) 4842
HhaI GCGC 3 cut(s) 1548, 2229, 5724
Hin1I GRCGYC 2 cut(s) 2402, 3348
Hin6I GCGC 3 cut(s) 1546, 2227, 5722
HinP1I GCGC 3 cut(s) 1546, 2227, 5722
HincII GTYRAC 2 cut(s) 1923, 2675
HindII GTYRAC 2 cut(s) 1923, 2675
HindIII AAGCTT 6 cut(s) 407, 2540, 3695, 5006, 5672, 6047
HpaII CCGG 6 cut(s) 1811, 3321, 3479, 4406, 5099, 5222
HphI GGTGA 9 cut(s) 1847, 2345, 2872, 3062, 3208, 4303, 5135, 6572, 6721
Hpy166II GTNNAC 9 cut(s) 480, 1220, 1688, 1923, 2675, 4678, 4832, 4976, 6731
Hpy8I GTNNAC 9 cut(s) 480, 1220, 1688, 1923, 2675, 4678, 4832, 4976, 6731
Hpy99I CGWCG 3 cut(s) 62, 3350, 6905
HpyCH4IV ACGT 9 cut(s) 60, 263, 621, 1504, 1581, 2402, 2556, 3131, 3348
HpySE526I ACGT 9 cut(s) 60, 263, 621, 1504, 1581, 2402, 2556, 3131, 3348
Hsp92I GRCGYC 2 cut(s) 2402, 3348
HspAI GCGC 3 cut(s) 1546, 2227, 5722
Kpn2I TCCGGA 1 cut(s) 3478
Ksp22I TGATCA 5 cut(s) 727, 1852, 3246, 4357, 5140
LguI GCTCTTC 5 cut(s) 1527, 3234, 4371, 4815, 6747
MabI ACCWGGT 2 cut(s) 1798, 5086
MaeII ACGT 9 cut(s) 60, 263, 621, 1504, 1581, 2402, 2556, 3131, 3348
MfeI CAATTG 8 cut(s) 2220, 2582, 2629, 5715, 6089, 6202, 6211, 6567
MflI RGATCY 7 cut(s) 720, 1196, 2485, 2977, 3631, 5992, 6163
MlyI GAGTC 8 cut(s) 2022, 2356, 2849, 4820, 5390, 5517, 5572, 5878
MmeI TCCRAC 5 cut(s) 571, 1073, 2602, 3859, 6109
Mph1103I ATGCAT 5 cut(s) 302, 1228, 3590, 4770, 6704
MroI TCCGGA 1 cut(s) 3478
MroXI GAANNNNTTC 5 cut(s) 1512, 4125, 4388, 4800, 6156
MslI CAYNNNNRTG 5 cut(s) 1225, 2714, 2884, 3402, 6707
MspA1I CMGCKG 2 cut(s) 3035, 4372
MspCI CTTAAG 1 cut(s) 2300
MspI CCGG 6 cut(s) 1811, 3321, 3479, 4406, 5099, 5222
MspR9I CCNGG 9 cut(s) 220, 1539, 1800, 2811, 3508, 4827, 5088, 5222, 6324
MunI CAATTG 8 cut(s) 2220, 2582, 2629, 5715, 6089, 6202, 6211, 6567
Mva1269I GAATGC 6 cut(s) 302, 1407, 2523, 3590, 4390, 6030
MvaI CCWGG 8 cut(s) 220, 1539, 1800, 2811, 3508, 4827, 5088, 6324
NciI CCSGG 1 cut(s) 5222
NcoI CCATGG 4 cut(s) 47, 781, 3335, 4315
NdeI CATATG 2 cut(s) 4333, 6835
NmeAIII GCCGAG 1 cut(s) 158
NmuCI GTSAC 4 cut(s) 1021, 2860, 3041, 4309
NsiI ATGCAT 5 cut(s) 302, 1228, 3590, 4770, 6704
NspI RCATGY 5 cut(s) 1226, 1347, 4304, 4635, 6645
NspV TTCGAA 1 cut(s) 1516
OliI CACNNNNGTG 1 cut(s) 2714
PagI TCATGA 1 cut(s) 1587
PaqCI CACCTGC 1 cut(s) 3184
PciSI GCTCTTC 5 cut(s) 1527, 3234, 4371, 4815, 6747
PcsI WCGNNNNNNNCGW 1 cut(s) 6534
PctI GAATGC 6 cut(s) 302, 1407, 2523, 3590, 4390, 6030
PdmI GAANNNNTTC 5 cut(s) 1512, 4125, 4388, 4800, 6156
PflFI GACNNNGTC 1 cut(s) 4836
PfoI TCCNGGA 2 cut(s) 2809, 6322
PinAI ACCGGT 1 cut(s) 3320
Ple19I CGATCG 1 cut(s) 3519
PleI GAGTC 8 cut(s) 2022, 2355, 2849, 4819, 5389, 5517, 5571, 5877
PmaCI CACGTG 3 cut(s) 264, 1582, 3132
PmlI CACGTG 3 cut(s) 264, 1582, 3132
PpsI GAGTC 8 cut(s) 2022, 2355, 2849, 4819, 5389, 5517, 5571, 5877
Ppu21I YACGTR 3 cut(s) 264, 1582, 3132
PpuMI RGGWCCY 3 cut(s) 1929, 4485, 5217
PsiI TTATAA 1 cut(s) 2804
Psp124BI GAGCTC 3 cut(s) 198, 3486, 4428
Psp5II RGGWCCY 3 cut(s) 1929, 4485, 5217
Psp6I CCWGG 8 cut(s) 218, 1537, 1798, 2809, 3506, 4825, 5086, 6322
PspCI CACGTG 3 cut(s) 264, 1582, 3132
PspFI CCCAGC 1 cut(s) 473
PspGI CCWGG 8 cut(s) 218, 1537, 1798, 2809, 3506, 4825, 5086, 6322
PspOMI GGGCCC 2 cut(s) 6475, 6723
PspPPI RGGWCCY 3 cut(s) 1929, 4485, 5217
PstI CTGCAG 3 cut(s) 5552, 5695, 6919
PsuI RGATCY 7 cut(s) 720, 1196, 2485, 2977, 3631, 5992, 6163
PsyI GACNNNGTC 1 cut(s) 4836
PvuI CGATCG 1 cut(s) 3519
PvuII CAGCTG 2 cut(s) 3035, 4372
RseI CAYNNNNRTG 5 cut(s) 1225, 2714, 2884, 3402, 6707
SacI GAGCTC 3 cut(s) 198, 3486, 4428
SalI GTCGAC 1 cut(s) 2673
SapI GCTCTTC 5 cut(s) 1527, 3234, 4371, 4815, 6747
ScaI AGTACT 2 cut(s) 3116, 5987
SchI GAGTC 8 cut(s) 2022, 2356, 2849, 4820, 5390, 5517, 5572, 5878
ScrFI CCNGG 9 cut(s) 220, 1539, 1800, 2811, 3508, 4827, 5088, 5222, 6324
SexAI ACCWGGT 2 cut(s) 1798, 5086
SfcI CTRYAG 7 cut(s) 3171, 4085, 5202, 5548, 5691, 6684, 6915
SfuI TTCGAA 1 cut(s) 1516
SinI GGWCC 3 cut(s) 1929, 4485, 5217
SmiMI CAYNNNNRTG 5 cut(s) 1225, 2714, 2884, 3402, 6707
SpeI ACTAGT 2 cut(s) 706, 4306
SsiI CCGC 6 cut(s) 227, 2758, 3379, 3940, 6271, 6882
SspI AATATT 3 cut(s) 1849, 5137, 6908
SstI GAGCTC 3 cut(s) 198, 3486, 4428
StyD4I CCNGG 9 cut(s) 218, 1537, 1798, 2809, 3506, 4825, 5086, 5220, 6322
StyI CCWWGG 7 cut(s) 47, 781, 948, 2339, 2472, 3335, 4315
TaiI ACGT 9 cut(s) 63, 266, 624, 1507, 1584, 2405, 2559, 3134, 3351
TaqII GACCGA 1 cut(s) 4061
TseFI GTSAC 4 cut(s) 1021, 2860, 3041, 4309
Tsp45I GTSAC 4 cut(s) 1021, 2860, 3041, 4309
TspGWI ACGGA 6 cut(s) 2420, 2937, 3251, 4555, 6299, 6447
Tth111I GACNNNGTC 1 cut(s) 4836
Vha464I CTTAAG 1 cut(s) 2300
VneI GTGCAC 1 cut(s) 6729
VpaK11BI GGWCC 3 cut(s) 1929, 4485, 5217
XbaI TCTAGA 1 cut(s) 6631
XceI RCATGY 5 cut(s) 1226, 1347, 4304, 4635, 6645
XmiI GTMKAC 3 cut(s) 2674, 4677, 4975
XmnI GAANNNNTTC 5 cut(s) 1512, 4125, 4388, 4800, 6156
ZraI GACGTC 2 cut(s) 2403, 3349
ZrmI AGTACT 2 cut(s) 3116, 5987
Zsp2I ATGCAT 5 cut(s) 302, 1228, 3590, 4770, 6704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.