TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_13 | PF23286 | 238 - 343 | 2.3e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 267 - 339 | 2.4e-09 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 380 - 451 | 2e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 387 - 475 | 2.6e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| C-JID | PF20160 | 516 - 663 | 5e-15 | C-JID domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 383 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 770 |
| AccI | GTMKAC | 1 cut(s) | 1279 |
| AccII | CGCG | 1 cut(s) | 2025 |
| AciI | CCGC | 5 cut(s) | 431, 796, 1035, 1081, 1118 |
| AclWI | GGATC | 6 cut(s) | 996, 1051, 1106, 1534, 1715, 2062 |
| AcoI | YGGCCR | 1 cut(s) | 1738 |
| AcuI | CTGAAG | 1 cut(s) | 330 |
| AfaI | GTAC | 5 cut(s) | 48, 270, 550, 1624, 1976 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 700, 770, 907, 1127, 1413 |
| AflII | CTTAAG | 1 cut(s) | 1310 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 370, 402 |
| AluBI | AGCT | 5 cut(s) | 423, 528, 1309, 2045, 2070 |
| AluI | AGCT | 5 cut(s) | 423, 528, 1309, 2045, 2070 |
| Alw26I | GTCTC | 4 cut(s) | 933, 975, 1006, 1794 |
| AlwI | GGATC | 6 cut(s) | 996, 1051, 1106, 1534, 1715, 2062 |
| AoxI | GGCC | 5 cut(s) | 349, 856, 1072, 1669, 1738 |
| ApeKI | GCWGC | 3 cut(s) | 741, 1227, 2042 |
| AseI | ATTAAT | 2 cut(s) | 684, 1497 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1417, 2088 |
| AspS9I | GGNCC | 3 cut(s) | 350, 1072, 1670 |
| AsuHPI | GGTGA | 2 cut(s) | 1945, 1960 |
| AsuNHI | GCTAGC | 1 cut(s) | 2066 |
| AxyI | CCTNAGG | 1 cut(s) | 860 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 260, 293 |
| BalI | TGGCCA | 1 cut(s) | 1740 |
| BanII | GRGCYC | 1 cut(s) | 1966 |
| BauI | CACGAG | 1 cut(s) | 1845 |
| BbsI | GAAGAC | 2 cut(s) | 1134, 1494 |
| BbvI | GCAGC | 3 cut(s) | 728, 1214, 2054 |
| BccI | CCATC | 7 cut(s) | 295, 299, 634, 803, 1043, 1058, 1372 |
| BciVI | GTATCC | 1 cut(s) | 408 |
| BclI | TGATCA | 1 cut(s) | 193 |
| BcoDI | GTCTC | 4 cut(s) | 933, 975, 1006, 1794 |
| BfaI | CTAG | 7 cut(s) | 5, 27, 1181, 1446, 1674, 2067, 2110 |
| BfrI | CTTAAG | 1 cut(s) | 1310 |
| BfuI | GTATCC | 1 cut(s) | 408 |
| BglII | AGATCT | 1 cut(s) | 59 |
| BisI | GCNGC | 4 cut(s) | 742, 1081, 1228, 2043 |
| BlsI | GCNGC | 4 cut(s) | 743, 1082, 1229, 2044 |
| BmgT120I | GGNCC | 3 cut(s) | 350, 1072, 1670 |
| BmiI | GGNNCC | 4 cut(s) | 352, 1073, 1479, 1689 |
| BmsI | GCATC | 4 cut(s) | 87, 444, 944, 1432 |
| BmtI | GCTAGC | 1 cut(s) | 2070 |
| BpiI | GAAGAC | 2 cut(s) | 1134, 1494 |
| BpmI | CTGGAG | 3 cut(s) | 999, 1030, 1346 |
| BpuEI | CTTGAG | 4 cut(s) | 394, 470, 599, 671 |
| BsaAI | YACGTR | 1 cut(s) | 1751 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1857 |
| BsaI | GGTCTC | 1 cut(s) | 1006 |
| BsaJI | CCNNGG | 3 cut(s) | 664, 905, 1666 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 700, 770, 907, 1127, 1413 |
| Bse1I | ACTGG | 4 cut(s) | 274, 982, 1013, 1634 |
| Bse21I | CCTNAGG | 1 cut(s) | 860 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1857 |
| BseDI | CCNNGG | 3 cut(s) | 664, 905, 1666 |
| BseGI | GGATG | 6 cut(s) | 102, 310, 622, 959, 1054, 1069 |
| BseJI | GATNNNNATC | 1 cut(s) | 1857 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 700, 770, 907, 1127, 1413 |
| BseMII | CTCAG | 2 cut(s) | 567, 874 |
| BseNI | ACTGG | 4 cut(s) | 274, 982, 1013, 1634 |
| BseXI | GCAGC | 3 cut(s) | 728, 1214, 2054 |
| Bsh1236I | CGCG | 1 cut(s) | 2025 |
| Bsh1285I | CGRYCG | 1 cut(s) | 822 |
| BshFI | GGCC | 5 cut(s) | 351, 858, 1074, 1671, 1740 |
| BsiEI | CGRYCG | 1 cut(s) | 822 |
| BslFI | GGGAC | 2 cut(s) | 826, 1599 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 700, 770, 907, 1127, 1413 |
| BsmAI | GTCTC | 4 cut(s) | 933, 975, 1006, 1794 |
| BsmBI | CGTCTC | 1 cut(s) | 1794 |
| BsmFI | GGGAC | 2 cut(s) | 826, 1599 |
| BsmI | GAATGC | 1 cut(s) | 1427 |
| BsnI | GGCC | 5 cut(s) | 351, 858, 1074, 1671, 1740 |
| Bso31I | GGTCTC | 1 cut(s) | 1006 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1966 |
| BspACI | CCGC | 5 cut(s) | 431, 796, 1035, 1081, 1118 |
| BspANI | GGCC | 5 cut(s) | 351, 858, 1074, 1671, 1740 |
| BspCNI | CTCAG | 2 cut(s) | 566, 873 |
| BspFNI | CGCG | 1 cut(s) | 2025 |
| BspLI | GGNNCC | 4 cut(s) | 352, 1073, 1479, 1689 |
| BspOI | GCTAGC | 1 cut(s) | 2070 |
| BspPI | GGATC | 6 cut(s) | 996, 1051, 1106, 1534, 1715, 2062 |
| BspTI | CTTAAG | 1 cut(s) | 1310 |
| BspTNI | GGTCTC | 1 cut(s) | 1006 |
| BsrI | ACTGG | 4 cut(s) | 274, 982, 1013, 1634 |
| BssECI | CCNNGG | 3 cut(s) | 664, 905, 1666 |
| BssSI | CACGAG | 1 cut(s) | 1845 |
| BssT1I | CCWWGG | 3 cut(s) | 664, 905, 1666 |
| Bst2BI | CACGAG | 1 cut(s) | 1845 |
| Bst4CI | ACNGT | 4 cut(s) | 130, 674, 1027, 1384 |
| Bst6I | CTCTTC | 3 cut(s) | 258, 539, 1365 |
| BstAFI | CTTAAG | 1 cut(s) | 1310 |
| BstBAI | YACGTR | 1 cut(s) | 1751 |
| BstC8I | GCNNGC | 4 cut(s) | 431, 441, 1757, 2068 |
| BstDEI | CTNAG | 8 cut(s) | 297, 553, 805, 860, 994, 1256, 1305, 2048 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1411 |
| BstF5I | GGATG | 6 cut(s) | 102, 310, 622, 959, 1054, 1069 |
| BstFNI | CGCG | 1 cut(s) | 2025 |
| BstMAI | GTCTC | 4 cut(s) | 933, 975, 1006, 1794 |
| BstMCI | CGRYCG | 1 cut(s) | 822 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 233, 687, 1080, 1464 |
| BstNSI | RCATGY | 2 cut(s) | 875, 1759 |
| BstUI | CGCG | 1 cut(s) | 2025 |
| BstV1I | GCAGC | 3 cut(s) | 728, 1214, 2054 |
| BstV2I | GAAGAC | 2 cut(s) | 1134, 1494 |
| BstX2I | RGATCY | 2 cut(s) | 59, 2054 |
| BstYI | RGATCY | 2 cut(s) | 59, 2054 |
| Bsu36I | CCTNAGG | 1 cut(s) | 860 |
| BsuI | GTATCC | 1 cut(s) | 408 |
| BsuRI | GGCC | 5 cut(s) | 351, 858, 1074, 1671, 1740 |
| BtsCI | GGATG | 6 cut(s) | 102, 310, 622, 959, 1054, 1069 |
| BtsIMutI | CAGTG | 2 cut(s) | 281, 975 |
| Cac8I | GCNNGC | 4 cut(s) | 431, 441, 1757, 2068 |
| Cfr13I | GGNCC | 3 cut(s) | 350, 1072, 1670 |
| Csp6I | GTAC | 5 cut(s) | 47, 269, 549, 1623, 1975 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1876, 1911 |
| CviAII | CATG | 7 cut(s) | 101, 123, 366, 872, 985, 1620, 1756 |
| CviQI | GTAC | 5 cut(s) | 47, 269, 549, 1623, 1975 |
| DdeI | CTNAG | 8 cut(s) | 297, 553, 805, 860, 994, 1256, 1305, 2048 |
| EaeI | YGGCCR | 1 cut(s) | 1738 |
| Eam1104I | CTCTTC | 3 cut(s) | 258, 539, 1365 |
| EarI | CTCTTC | 3 cut(s) | 258, 539, 1365 |
| EciI | GGCGGA | 1 cut(s) | 1107 |
| Eco130I | CCWWGG | 3 cut(s) | 664, 905, 1666 |
| Eco24I | GRGCYC | 1 cut(s) | 1966 |
| Eco31I | GGTCTC | 1 cut(s) | 1006 |
| Eco32I | GATATC | 1 cut(s) | 1210 |
| Eco57I | CTGAAG | 1 cut(s) | 330 |
| Eco81I | CCTNAGG | 1 cut(s) | 860 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1411 |
| EcoO109I | RGGNCCY | 3 cut(s) | 350, 1072, 1670 |
| EcoRI | GAATTC | 1 cut(s) | 323 |
| EcoRV | GATATC | 1 cut(s) | 1210 |
| EcoT14I | CCWWGG | 3 cut(s) | 664, 905, 1666 |
| EcoT22I | ATGCAT | 2 cut(s) | 92, 102 |
| EcoT38I | GRGCYC | 1 cut(s) | 1966 |
| ErhI | CCWWGG | 3 cut(s) | 664, 905, 1666 |
| Esp3I | CGTCTC | 1 cut(s) | 1794 |
| FaeI | CATG | 7 cut(s) | 104, 126, 369, 875, 988, 1623, 1759 |
| FaqI | GGGAC | 2 cut(s) | 826, 1599 |
| FatI | CATG | 7 cut(s) | 100, 122, 365, 871, 984, 1619, 1755 |
| FauI | CCCGC | 1 cut(s) | 438 |
| FauNDI | CATATG | 1 cut(s) | 92 |
| FbaI | TGATCA | 1 cut(s) | 193 |
| FblI | GTMKAC | 1 cut(s) | 1279 |
| Fnu4HI | GCNGC | 4 cut(s) | 742, 1081, 1228, 2043 |
| FokI | GGATG | 6 cut(s) | 109, 317, 609, 966, 1061, 1076 |
| FriOI | GRGCYC | 1 cut(s) | 1966 |
| Fsp4HI | GCNGC | 4 cut(s) | 742, 1081, 1228, 2043 |
| FspBI | CTAG | 7 cut(s) | 5, 27, 1181, 1446, 1674, 2067, 2110 |
| GluI | GCNGC | 4 cut(s) | 742, 1081, 1228, 2043 |
| GsuI | CTGGAG | 3 cut(s) | 999, 1030, 1346 |
| HaeIII | GGCC | 5 cut(s) | 351, 858, 1074, 1671, 1740 |
| Hin1II | CATG | 7 cut(s) | 104, 126, 369, 875, 988, 1623, 1759 |
| HincII | GTYRAC | 1 cut(s) | 161 |
| HindII | GTYRAC | 1 cut(s) | 161 |
| HindIII | AAGCTT | 1 cut(s) | 1307 |
| HinfI | GANTC | 9 cut(s) | 109, 143, 152, 713, 760, 799, 1102, 1315, 1504 |
| HphI | GGTGA | 2 cut(s) | 1945, 1960 |
| Hpy166II | GTNNAC | 3 cut(s) | 161, 1280, 1975 |
| Hpy188I | TCNGA | 4 cut(s) | 556, 1048, 1531, 1578 |
| Hpy8I | GTNNAC | 3 cut(s) | 161, 1280, 1975 |
| Hpy99I | CGWCG | 1 cut(s) | 211 |
| HpyAV | CCTTC | 8 cut(s) | 301, 411, 843, 911, 1085, 1352, 1407, 1654 |
| HpyCH4III | ACNGT | 4 cut(s) | 130, 674, 1027, 1384 |
| HpyCH4IV | ACGT | 3 cut(s) | 1720, 1750, 1787 |
| HpyCH4V | TGCA | 8 cut(s) | 90, 100, 635, 871, 885, 1401, 1427, 1467 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 233, 687, 1080, 1464 |
| HpyF3I | CTNAG | 8 cut(s) | 297, 553, 805, 860, 994, 1256, 1305, 2048 |
| HpySE526I | ACGT | 3 cut(s) | 1720, 1750, 1787 |
| Hsp92II | CATG | 7 cut(s) | 104, 126, 369, 875, 988, 1623, 1759 |
| Ksp22I | TGATCA | 1 cut(s) | 193 |
| LmnI | GCTCC | 3 cut(s) | 224, 775, 1687 |
| Lsp1109I | GCAGC | 3 cut(s) | 728, 1214, 2054 |
| LweI | GCATC | 4 cut(s) | 87, 444, 944, 1432 |
| MaeI | CTAG | 7 cut(s) | 5, 27, 1181, 1446, 1674, 2067, 2110 |
| MaeII | ACGT | 3 cut(s) | 1720, 1750, 1787 |
| MaeIII | GTNAC | 3 cut(s) | 668, 1450, 2105 |
| MfeI | CAATTG | 3 cut(s) | 228, 840, 1396 |
| MflI | RGATCY | 2 cut(s) | 59, 2054 |
| MhlI | GDGCHC | 1 cut(s) | 1966 |
| MlsI | TGGCCA | 1 cut(s) | 1740 |
| MluNI | TGGCCA | 1 cut(s) | 1740 |
| MlyI | GAGTC | 3 cut(s) | 152, 161, 1111 |
| MmeI | TCCRAC | 1 cut(s) | 440 |
| Mox20I | TGGCCA | 1 cut(s) | 1740 |
| Mph1103I | ATGCAT | 2 cut(s) | 92, 102 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1417, 2088 |
| MscI | TGGCCA | 1 cut(s) | 1740 |
| MseI | TTAA | 7 cut(s) | 509, 560, 684, 735, 1311, 1379, 1497 |
| MslI | CAYNNNNRTG | 3 cut(s) | 95, 807, 1618 |
| Msp20I | TGGCCA | 1 cut(s) | 1740 |
| MspCI | CTTAAG | 1 cut(s) | 1310 |
| MunI | CAATTG | 3 cut(s) | 228, 840, 1396 |
| Mva1269I | GAATGC | 1 cut(s) | 1427 |
| MvnI | CGCG | 1 cut(s) | 2025 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 233, 687, 1080, 1464 |
| NdeI | CATATG | 1 cut(s) | 92 |
| NheI | GCTAGC | 1 cut(s) | 2066 |
| NlaIII | CATG | 7 cut(s) | 104, 126, 369, 875, 988, 1623, 1759 |
| NlaIV | GGNNCC | 4 cut(s) | 352, 1073, 1479, 1689 |
| NmuCI | GTSAC | 1 cut(s) | 1450 |
| NsiI | ATGCAT | 2 cut(s) | 92, 102 |
| NspI | RCATGY | 2 cut(s) | 875, 1759 |
| PaeI | GCATGC | 1 cut(s) | 1759 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2029 |
| PctI | GAATGC | 1 cut(s) | 1427 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1417, 2088 |
| PfeI | GAWTC | 6 cut(s) | 109, 713, 760, 799, 1315, 1504 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 770 |
| PkrI | GCNGC | 4 cut(s) | 743, 1082, 1229, 2044 |
| Ple19I | CGATCG | 1 cut(s) | 822 |
| PleI | GAGTC | 3 cut(s) | 151, 160, 1110 |
| PpsI | GAGTC | 3 cut(s) | 151, 160, 1110 |
| Ppu21I | YACGTR | 1 cut(s) | 1751 |
| PshBI | ATTAAT | 2 cut(s) | 684, 1497 |
| PsiI | TTATAA | 1 cut(s) | 383 |
| PspN4I | GGNNCC | 4 cut(s) | 352, 1073, 1479, 1689 |
| PspPI | GGNCC | 3 cut(s) | 350, 1072, 1670 |
| PsuI | RGATCY | 2 cut(s) | 59, 2054 |
| PvuI | CGATCG | 1 cut(s) | 822 |
| RsaI | GTAC | 5 cut(s) | 48, 270, 550, 1624, 1976 |
| RsaNI | GTAC | 5 cut(s) | 47, 269, 549, 1623, 1975 |
| RseI | CAYNNNNRTG | 3 cut(s) | 95, 807, 1618 |
| SaqAI | TTAA | 7 cut(s) | 509, 560, 684, 735, 1311, 1379, 1497 |
| SatI | GCNGC | 4 cut(s) | 742, 1081, 1228, 2043 |
| Sau96I | GGNCC | 3 cut(s) | 350, 1072, 1670 |
| SchI | GAGTC | 3 cut(s) | 152, 161, 1111 |
| SduI | GDGCHC | 1 cut(s) | 1966 |
| SfaNI | GCATC | 4 cut(s) | 87, 444, 944, 1432 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 95, 807, 1618 |
| SmlI | CTYRAG | 5 cut(s) | 373, 449, 578, 650, 1310 |
| SmoI | CTYRAG | 5 cut(s) | 373, 449, 578, 650, 1310 |
| SphI | GCATGC | 1 cut(s) | 1759 |
| SsiI | CCGC | 5 cut(s) | 431, 796, 1035, 1081, 1118 |
| SspI | AATATT | 3 cut(s) | 523, 725, 1835 |
| SspMI | CTAG | 7 cut(s) | 5, 27, 1181, 1446, 1674, 2067, 2110 |
| StyI | CCWWGG | 3 cut(s) | 664, 905, 1666 |
| TaaI | ACNGT | 4 cut(s) | 130, 674, 1027, 1384 |
| TaiI | ACGT | 3 cut(s) | 1723, 1753, 1790 |
| TaqI | TCGA | 2 cut(s) | 327, 822 |
| TatI | WGTACW | 1 cut(s) | 46 |
| TauI | GCSGC | 1 cut(s) | 1083 |
| TfiI | GAWTC | 6 cut(s) | 109, 713, 760, 799, 1315, 1504 |
| Tru1I | TTAA | 7 cut(s) | 509, 560, 684, 735, 1311, 1379, 1497 |
| Tru9I | TTAA | 7 cut(s) | 509, 560, 684, 735, 1311, 1379, 1497 |
| TscAI | CASTG | 2 cut(s) | 281, 982 |
| TseFI | GTSAC | 1 cut(s) | 1450 |
| TseI | GCWGC | 3 cut(s) | 741, 1227, 2042 |
| Tsp45I | GTSAC | 1 cut(s) | 1450 |
| TspDTI | ATGAA | 3 cut(s) | 797, 825, 1500 |
| TspRI | CASTG | 2 cut(s) | 281, 982 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 770 |
| Vha464I | CTTAAG | 1 cut(s) | 1310 |
| VspI | ATTAAT | 2 cut(s) | 684, 1497 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1411 |
| XbaI | TCTAGA | 1 cut(s) | 1180 |
| XceI | RCATGY | 2 cut(s) | 875, 1759 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1748 |
| XmiI | GTMKAC | 1 cut(s) | 1279 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1417, 2088 |
| XspI | CTAG | 7 cut(s) | 5, 27, 1181, 1446, 1674, 2067, 2110 |
| Zsp2I | ATGCAT | 2 cut(s) | 92, 102 |