TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 18 - 190 | 9.2e-56 | TIR domain |
| TIR_2 | PF13676 | 21 - 117 | 2.8e-16 | TIR domain |
| NB-ARC | PF00931 | 202 - 369 | 8.3e-25 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 438 - 510 | 8.3e-13 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 700 - 883 | 5.1e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 795 - 901 | 3.2e-09 | Leucine-rich repeat region |
| C-JID | PF20160 | 936 - 1083 | 1.3e-10 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2276 |
| AarI | CACCTGC | 1 cut(s) | 2889 |
| Acc36I | ACCTGC | 1 cut(s) | 2889 |
| AccB1I | GGYRCC | 1 cut(s) | 3332 |
| AccI | GTMKAC | 1 cut(s) | 1219 |
| AccIII | TCCGGA | 3 cut(s) | 3102, 3121, 3139 |
| AciI | CCGC | 5 cut(s) | 130, 774, 899, 2758, 3367 |
| AclWI | GGATC | 6 cut(s) | 152, 338, 351, 933, 2654, 2972 |
| AcoI | YGGCCR | 1 cut(s) | 462 |
| AcuI | CTGAAG | 6 cut(s) | 402, 1064, 1689, 1715, 2045, 2982 |
| AcvI | CACGTG | 3 cut(s) | 264, 3132, 3150 |
| AdeI | CACNNNGTG | 1 cut(s) | 267 |
| AfaI | GTAC | 8 cut(s) | 1017, 1208, 1363, 1987, 2638, 2934, 3022, 3242 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 264, 2481 |
| AflII | CTTAAG | 1 cut(s) | 2303 |
| AflIII | ACRYGT | 4 cut(s) | 60, 89, 3129, 3147 |
| AgeI | ACCGGT | 1 cut(s) | 1946 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2947 |
| AhlI | ACTAGT | 2 cut(s) | 706, 1018 |
| AjiI | CACGTC | 1 cut(s) | 61 |
| AjnI | CCWGG | 3 cut(s) | 1540, 1801, 2809 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 393, 425 |
| AleI | CACNNNNGTG | 1 cut(s) | 2235 |
| Alw21I | GWGCWC | 5 cut(s) | 14, 2232, 2926, 3249, 3380 |
| Alw26I | GTCTC | 4 cut(s) | 352, 473, 2482, 2847 |
| AlwI | GGATC | 6 cut(s) | 152, 338, 351, 933, 2654, 2972 |
| Ama87I | CYCGRG | 1 cut(s) | 3183 |
| Aor13HI | TCCGGA | 3 cut(s) | 3102, 3121, 3139 |
| AoxI | GGCC | 2 cut(s) | 462, 1732 |
| ApeKI | GCWGC | 8 cut(s) | 127, 372, 1699, 2124, 2284, 2703, 3294, 3357 |
| AsiGI | ACCGGT | 1 cut(s) | 1946 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 387, 769, 837, 1077, 1100, 1515, 2390 |
| AspS9I | GGNCC | 2 cut(s) | 1733, 1932 |
| AsuHPI | GGTGA | 5 cut(s) | 1449, 1936, 2348, 3062, 3226 |
| AsuII | TTCGAA | 1 cut(s) | 3174 |
| AvaI | CYCGRG | 1 cut(s) | 3183 |
| AvaII | GGWCC | 1 cut(s) | 1932 |
| AxyI | CCTNAGG | 1 cut(s) | 577 |
| BaeGI | GKGCMC | 1 cut(s) | 3238 |
| BalI | TGGCCA | 1 cut(s) | 464 |
| BamHI | GGATCC | 1 cut(s) | 343 |
| BanI | GGYRCC | 1 cut(s) | 3332 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 1688, 1720, 3233, 3265 |
| BbrPI | CACGTG | 3 cut(s) | 264, 3132, 3150 |
| BbsI | GAAGAC | 3 cut(s) | 90, 1163, 2970 |
| Bbv12I | GWGCWC | 5 cut(s) | 14, 2232, 2926, 3249, 3380 |
| BbvI | GCAGC | 8 cut(s) | 139, 384, 1686, 2111, 2296, 2715, 3306, 3369 |
| BccI | CCATC | 8 cut(s) | 26, 191, 471, 667, 1295, 1309, 1907, 2017 |
| BceAI | ACGGC | 1 cut(s) | 2939 |
| BciT130I | CCWGG | 3 cut(s) | 1542, 1803, 2811 |
| BciVI | GTATCC | 1 cut(s) | 1791 |
| BclI | TGATCA | 1 cut(s) | 3264 |
| BcoDI | GTCTC | 4 cut(s) | 352, 473, 2482, 2847 |
| BcuI | ACTAGT | 2 cut(s) | 706, 1018 |
| BfaI | CTAG | 7 cut(s) | 707, 788, 908, 1002, 1019, 2730, 3353 |
| BfmI | CTRYAG | 4 cut(s) | 1250, 3030, 3189, 3399 |
| BfrI | CTTAAG | 1 cut(s) | 2303 |
| BfuAI | ACCTGC | 1 cut(s) | 2889 |
| BfuI | GTATCC | 1 cut(s) | 1791 |
| BisI | GCNGC | 9 cut(s) | 128, 131, 373, 1700, 2125, 2285, 2704, 3295, 3358 |
| BlpI | GCTNAGC | 1 cut(s) | 603 |
| BlsI | GCNGC | 9 cut(s) | 129, 132, 374, 1701, 2126, 2286, 2705, 3296, 3359 |
| Bme1390I | CCNGG | 3 cut(s) | 1542, 1803, 2811 |
| Bme18I | GGWCC | 1 cut(s) | 1932 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2947 |
| BmeT110I | CYCGRG | 1 cut(s) | 3183 |
| BmgBI | CACGTC | 1 cut(s) | 61 |
| BmgT120I | GGNCC | 2 cut(s) | 1733, 1932 |
| BmiI | GGNNCC | 7 cut(s) | 345, 574, 1934, 2367, 2696, 2772, 3334 |
| BmrFI | CCNGG | 3 cut(s) | 1542, 1803, 2811 |
| BmsI | GCATC | 8 cut(s) | 436, 559, 589, 753, 1741, 2872, 3096, 3194 |
| BoxI | GACNNNNGTC | 1 cut(s) | 783 |
| BpiI | GAAGAC | 3 cut(s) | 90, 1163, 2970 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 707, 739, 1711, 1743 |
| BpmI | CTGGAG | 2 cut(s) | 629, 1245 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1177 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 603 |
| Bpu14I | TTCGAA | 1 cut(s) | 3174 |
| BpuEI | CTTGAG | 6 cut(s) | 1777, 1945, 1982, 2254, 2734, 2922 |
| Bsa29I | ATCGAT | 1 cut(s) | 1902 |
| BsaAI | YACGTR | 4 cut(s) | 92, 264, 3132, 3150 |
| BsaBI | GATNNNNATC | 2 cut(s) | 924, 2976 |
| BsaJI | CCNNGG | 5 cut(s) | 47, 76, 781, 2876, 3336 |
| BsaWI | WCCGGW | 4 cut(s) | 1946, 3102, 3121, 3139 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 2844, 2874, 3116, 3134, 3146, 3164 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 264, 2481 |
| Bse118I | RCCGGY | 2 cut(s) | 1008, 1946 |
| Bse1I | ACTGG | 4 cut(s) | 465, 842, 971, 3028 |
| Bse21I | CCTNAGG | 1 cut(s) | 577 |
| Bse3DI | GCAATG | 5 cut(s) | 1364, 2013, 2018, 2698, 3160 |
| Bse8I | GATNNNNATC | 2 cut(s) | 924, 2976 |
| BseAI | TCCGGA | 3 cut(s) | 3102, 3121, 3139 |
| BseBI | CCWGG | 3 cut(s) | 1542, 1803, 2811 |
| BseCI | ATCGAT | 1 cut(s) | 1902 |
| BseDI | CCNNGG | 5 cut(s) | 47, 76, 781, 2876, 3336 |
| BseJI | GATNNNNATC | 2 cut(s) | 924, 2976 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 264, 2481 |
| BseMI | GCAATG | 5 cut(s) | 1364, 2013, 2018, 2698, 3160 |
| BseMII | CTCAG | 4 cut(s) | 591, 2506, 2856, 3102 |
| BseNI | ACTGG | 4 cut(s) | 465, 842, 971, 3028 |
| BseRI | GAGGAG | 3 cut(s) | 188, 320, 325 |
| BseSI | GKGCMC | 1 cut(s) | 3238 |
| BseXI | GCAGC | 8 cut(s) | 139, 384, 1686, 2111, 2296, 2715, 3306, 3369 |
| Bsh1285I | CGRYCG | 1 cut(s) | 231 |
| BshFI | GGCC | 2 cut(s) | 464, 1734 |
| BshNI | GGYRCC | 1 cut(s) | 3332 |
| BshTI | ACCGGT | 1 cut(s) | 1946 |
| BshVI | ATCGAT | 1 cut(s) | 1902 |
| BsiEI | CGRYCG | 1 cut(s) | 231 |
| BsiHKAI | GWGCWC | 5 cut(s) | 14, 2232, 2926, 3249, 3380 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3183 |
| BsiSI | CCGG | 7 cut(s) | 1009, 1118, 1947, 2600, 3103, 3122, 3140 |
| BslFI | GGGAC | 2 cut(s) | 167, 2209 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 264, 2481 |
| BsmAI | GTCTC | 4 cut(s) | 352, 473, 2482, 2847 |
| BsmFI | GGGAC | 2 cut(s) | 167, 2209 |
| BsmI | GAATGC | 2 cut(s) | 302, 2526 |
| BsnI | GGCC | 2 cut(s) | 464, 1734 |
| BsoBI | CYCGRG | 1 cut(s) | 3183 |
| Bsp119I | TTCGAA | 1 cut(s) | 3174 |
| Bsp1286I | GDGCHC | 6 cut(s) | 14, 2232, 2926, 3238, 3249, 3380 |
| Bsp13I | TCCGGA | 3 cut(s) | 3102, 3121, 3139 |
| Bsp1407I | TGTACA | 2 cut(s) | 1206, 1361 |
| Bsp143I | GATC | 9 cut(s) | 157, 228, 343, 925, 1903, 2659, 2977, 3067, 3264 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 603 |
| Bsp19I | CCATGG | 2 cut(s) | 781, 3336 |
| BspACI | CCGC | 5 cut(s) | 130, 774, 899, 2758, 3367 |
| BspANI | GGCC | 2 cut(s) | 464, 1734 |
| BspCNI | CTCAG | 4 cut(s) | 590, 2505, 2857, 3103 |
| BspDI | ATCGAT | 1 cut(s) | 1902 |
| BspEI | TCCGGA | 3 cut(s) | 3102, 3121, 3139 |
| BspHI | TCATGA | 1 cut(s) | 727 |
| BspLI | GGNNCC | 7 cut(s) | 345, 574, 1934, 2367, 2696, 2772, 3334 |
| BspMAI | CTGCAG | 1 cut(s) | 3403 |
| BspMI | ACCTGC | 1 cut(s) | 2889 |
| BspPI | GGATC | 6 cut(s) | 152, 338, 351, 933, 2654, 2972 |
| BspQI | GCTCTTC | 2 cut(s) | 1083, 1530 |
| BspT104I | TTCGAA | 1 cut(s) | 3174 |
| BspT107I | GGYRCC | 1 cut(s) | 3332 |
| BspTI | CTTAAG | 1 cut(s) | 2303 |
| BsrDI | GCAATG | 5 cut(s) | 1364, 2013, 2018, 2698, 3160 |
| BsrFI | RCCGGY | 2 cut(s) | 1008, 1946 |
| BsrGI | TGTACA | 2 cut(s) | 1206, 1361 |
| BsrI | ACTGG | 4 cut(s) | 465, 842, 971, 3028 |
| BssAI | RCCGGY | 2 cut(s) | 1008, 1946 |
| BssECI | CCNNGG | 5 cut(s) | 47, 76, 781, 2876, 3336 |
| BssMI | GATC | 9 cut(s) | 157, 228, 343, 925, 1903, 2659, 2977, 3067, 3264 |
| BssT1I | CCWWGG | 3 cut(s) | 781, 2876, 3336 |
| Bst2UI | CCWGG | 3 cut(s) | 1542, 1803, 2811 |
| Bst4CI | ACNGT | 9 cut(s) | 282, 537, 1148, 1273, 2426, 2481, 3031, 3119, 3240 |
| Bst6I | CTCTTC | 5 cut(s) | 396, 1083, 1530, 1644, 2401 |
| BstAFI | CTTAAG | 1 cut(s) | 2303 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2709 |
| BstAUI | TGTACA | 2 cut(s) | 1206, 1361 |
| BstBAI | YACGTR | 4 cut(s) | 92, 264, 3132, 3150 |
| BstBI | TTCGAA | 1 cut(s) | 3174 |
| BstC8I | GCNNGC | 3 cut(s) | 272, 531, 2524 |
| BstDSI | CCRYGG | 3 cut(s) | 47, 781, 3336 |
| BstKTI | GATC | 9 cut(s) | 160, 231, 346, 928, 1906, 2662, 2980, 3070, 3267 |
| BstMAI | GTCTC | 4 cut(s) | 352, 473, 2482, 2847 |
| BstMBI | GATC | 9 cut(s) | 157, 228, 343, 925, 1903, 2659, 2977, 3067, 3264 |
| BstMCI | CGRYCG | 1 cut(s) | 231 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 78, 470, 2542, 2709, 2921 |
| BstNI | CCWGG | 3 cut(s) | 1542, 1803, 2811 |
| BstNSI | RCATGY | 3 cut(s) | 1016, 1347, 2889 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 783 |
| BstSCI | CCNGG | 3 cut(s) | 1540, 1801, 2809 |
| BstSFI | CTRYAG | 4 cut(s) | 1250, 3030, 3189, 3399 |
| BstSLI | GKGCMC | 1 cut(s) | 3238 |
| BstV1I | GCAGC | 8 cut(s) | 139, 384, 1686, 2111, 2296, 2715, 3306, 3369 |
| BstV2I | GAAGAC | 3 cut(s) | 90, 1163, 2970 |
| BstX2I | RGATCY | 3 cut(s) | 343, 2659, 2977 |
| BstYI | RGATCY | 3 cut(s) | 343, 2659, 2977 |
| Bsu15I | ATCGAT | 1 cut(s) | 1902 |
| Bsu36I | CCTNAGG | 1 cut(s) | 577 |
| BsuI | GTATCC | 1 cut(s) | 1791 |
| BsuRI | GGCC | 2 cut(s) | 464, 1734 |
| BsuTUI | ATCGAT | 1 cut(s) | 1902 |
| BtgI | CCRYGG | 3 cut(s) | 47, 781, 3336 |
| BtgZI | GCGATG | 1 cut(s) | 1324 |
| BtrI | CACGTC | 1 cut(s) | 61 |
| BtsIMutI | CAGTG | 6 cut(s) | 533, 1144, 2486, 2754, 3027, 3236 |
| BveI | ACCTGC | 1 cut(s) | 2889 |
| Cac8I | GCNNGC | 3 cut(s) | 272, 531, 2524 |
| CciI | TCATGA | 1 cut(s) | 727 |
| Cfr10I | RCCGGY | 2 cut(s) | 1008, 1946 |
| Cfr13I | GGNCC | 2 cut(s) | 1733, 1932 |
| ClaI | ATCGAT | 1 cut(s) | 1902 |
| CseI | GACGC | 1 cut(s) | 1557 |
| CsiI | ACCWGGT | 1 cut(s) | 1801 |
| Csp6I | GTAC | 8 cut(s) | 1016, 1207, 1362, 1986, 2637, 2933, 3021, 3241 |
| CspAI | ACCGGT | 1 cut(s) | 1946 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2652, 2687 |
| CviQI | GTAC | 8 cut(s) | 1016, 1207, 1362, 1986, 2637, 2933, 3021, 3241 |
| DpnI | GATC | 9 cut(s) | 159, 230, 345, 927, 1905, 2661, 2979, 3069, 3266 |
| DpnII | GATC | 9 cut(s) | 157, 228, 343, 925, 1903, 2659, 2977, 3067, 3264 |
| DraIII | CACNNNGTG | 1 cut(s) | 267 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2947 |
| EaeI | YGGCCR | 1 cut(s) | 462 |
| Eam1104I | CTCTTC | 5 cut(s) | 396, 1083, 1530, 1644, 2401 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2947 |
| EarI | CTCTTC | 5 cut(s) | 396, 1083, 1530, 1644, 2401 |
| Eco130I | CCWWGG | 3 cut(s) | 781, 2876, 3336 |
| Eco47I | GGWCC | 1 cut(s) | 1932 |
| Eco57I | CTGAAG | 6 cut(s) | 402, 1064, 1689, 1715, 2045, 2982 |
| Eco72I | CACGTG | 3 cut(s) | 264, 3132, 3150 |
| Eco81I | CCTNAGG | 1 cut(s) | 577 |
| Eco88I | CYCGRG | 1 cut(s) | 3183 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1932 |
| EcoRI | GAATTC | 1 cut(s) | 1761 |
| EcoRII | CCWGG | 3 cut(s) | 1540, 1801, 2809 |
| EcoT14I | CCWWGG | 3 cut(s) | 781, 2876, 3336 |
| EcoT22I | ATGCAT | 3 cut(s) | 302, 2887, 3209 |
| ErhI | CCWWGG | 3 cut(s) | 781, 2876, 3336 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 888, 920 |
| FaqI | GGGAC | 2 cut(s) | 167, 2209 |
| FauNDI | CATATG | 1 cut(s) | 1045 |
| FbaI | TGATCA | 1 cut(s) | 3264 |
| FblI | GTMKAC | 1 cut(s) | 1219 |
| Fnu4HI | GCNGC | 9 cut(s) | 128, 131, 373, 1700, 2125, 2285, 2704, 3295, 3358 |
| Fsp4HI | GCNGC | 9 cut(s) | 128, 131, 373, 1700, 2125, 2285, 2704, 3295, 3358 |
| FspBI | CTAG | 7 cut(s) | 707, 788, 908, 1002, 1019, 2730, 3353 |
| GluI | GCNGC | 9 cut(s) | 128, 131, 373, 1700, 2125, 2285, 2704, 3295, 3358 |
| GsuI | CTGGAG | 2 cut(s) | 629, 1245 |
| HaeIII | GGCC | 2 cut(s) | 464, 1734 |
| HapII | CCGG | 7 cut(s) | 1009, 1118, 1947, 2600, 3103, 3122, 3140 |
| HgaI | GACGC | 1 cut(s) | 1557 |
| HincII | GTYRAC | 2 cut(s) | 1156, 2625 |
| HindII | GTYRAC | 2 cut(s) | 1156, 2625 |
| HindIII | AAGCTT | 1 cut(s) | 2543 |
| HpaI | GTTAAC | 2 cut(s) | 1156, 2625 |
| HpaII | CCGG | 7 cut(s) | 1009, 1118, 1947, 2600, 3103, 3122, 3140 |
| HphI | GGTGA | 5 cut(s) | 1449, 1936, 2348, 3062, 3226 |
| Hpy166II | GTNNAC | 4 cut(s) | 1156, 1220, 1547, 2625 |
| Hpy8I | GTNNAC | 4 cut(s) | 1156, 1220, 1547, 2625 |
| Hpy99I | CGWCG | 2 cut(s) | 62, 3389 |
| HpyCH4III | ACNGT | 9 cut(s) | 282, 537, 1148, 1273, 2426, 2481, 3031, 3119, 3240 |
| HpyCH4IV | ACGT | 6 cut(s) | 60, 91, 263, 3131, 3149, 3164 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 78, 470, 2542, 2709, 2921 |
| HpySE526I | ACGT | 6 cut(s) | 60, 91, 263, 3131, 3149, 3164 |
| Kpn2I | TCCGGA | 3 cut(s) | 3102, 3121, 3139 |
| Ksp22I | TGATCA | 1 cut(s) | 3264 |
| KspAI | GTTAAC | 2 cut(s) | 1156, 2625 |
| Kzo9I | GATC | 9 cut(s) | 157, 228, 343, 925, 1903, 2659, 2977, 3067, 3264 |
| LguI | GCTCTTC | 2 cut(s) | 1083, 1530 |
| LmnI | GCTCC | 1 cut(s) | 2700 |
| Lsp1109I | GCAGC | 8 cut(s) | 139, 384, 1686, 2111, 2296, 2715, 3306, 3369 |
| LweI | GCATC | 8 cut(s) | 436, 559, 589, 753, 1741, 2872, 3096, 3194 |
| MabI | ACCWGGT | 1 cut(s) | 1801 |
| MaeI | CTAG | 7 cut(s) | 707, 788, 908, 1002, 1019, 2730, 3353 |
| MaeII | ACGT | 6 cut(s) | 60, 91, 263, 3131, 3149, 3164 |
| MaeIII | GTNAC | 6 cut(s) | 1021, 1910, 2606, 2860, 2871, 3160 |
| MalI | GATC | 9 cut(s) | 159, 230, 345, 927, 1905, 2661, 2979, 3069, 3266 |
| MboI | GATC | 9 cut(s) | 157, 228, 343, 925, 1903, 2659, 2977, 3067, 3264 |
| MfeI | CAATTG | 6 cut(s) | 207, 938, 2223, 2585, 2632, 2707 |
| MflI | RGATCY | 3 cut(s) | 343, 2659, 2977 |
| MhlI | GDGCHC | 6 cut(s) | 14, 2232, 2926, 3238, 3249, 3380 |
| MlsI | TGGCCA | 1 cut(s) | 464 |
| MluNI | TGGCCA | 1 cut(s) | 464 |
| MlyI | GAGTC | 4 cut(s) | 1535, 2359, 2484, 2849 |
| MmeI | TCCRAC | 2 cut(s) | 571, 1144 |
| Mox20I | TGGCCA | 1 cut(s) | 464 |
| Mph1103I | ATGCAT | 3 cut(s) | 302, 2887, 3209 |
| MroI | TCCGGA | 3 cut(s) | 3102, 3121, 3139 |
| MroXI | GAANNNNTTC | 7 cut(s) | 387, 769, 837, 1077, 1100, 1515, 2390 |
| MscI | TGGCCA | 1 cut(s) | 464 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2235, 3212 |
| Msp20I | TGGCCA | 1 cut(s) | 464 |
| MspA1I | CMGCKG | 3 cut(s) | 130, 1084, 3262 |
| MspCI | CTTAAG | 1 cut(s) | 2303 |
| MspI | CCGG | 7 cut(s) | 1009, 1118, 1947, 2600, 3103, 3122, 3140 |
| MspR9I | CCNGG | 3 cut(s) | 1542, 1803, 2811 |
| MunI | CAATTG | 6 cut(s) | 207, 938, 2223, 2585, 2632, 2707 |
| Mva1269I | GAATGC | 2 cut(s) | 302, 2526 |
| MvaI | CCWGG | 3 cut(s) | 1542, 1803, 2811 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 78, 470, 2542, 2709, 2921 |
| NcoI | CCATGG | 2 cut(s) | 781, 3336 |
| NdeI | CATATG | 1 cut(s) | 1045 |
| NdeII | GATC | 9 cut(s) | 157, 228, 343, 925, 1903, 2659, 2977, 3067, 3264 |
| NlaIV | GGNNCC | 7 cut(s) | 345, 574, 1934, 2367, 2696, 2772, 3334 |
| NmuCI | GTSAC | 2 cut(s) | 1021, 2606 |
| NsiI | ATGCAT | 3 cut(s) | 302, 2887, 3209 |
| NspI | RCATGY | 3 cut(s) | 1016, 1347, 2889 |
| NspV | TTCGAA | 1 cut(s) | 3174 |
| OliI | CACNNNNGTG | 1 cut(s) | 2235 |
| PaeR7I | CTCGAG | 1 cut(s) | 3183 |
| PagI | TCATGA | 1 cut(s) | 727 |
| PaqCI | CACCTGC | 1 cut(s) | 2889 |
| PciSI | GCTCTTC | 2 cut(s) | 1083, 1530 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 224 |
| PctI | GAATGC | 2 cut(s) | 302, 2526 |
| PdmI | GAANNNNTTC | 7 cut(s) | 387, 769, 837, 1077, 1100, 1515, 2390 |
| PfeI | GAWTC | 9 cut(s) | 138, 289, 864, 987, 1663, 2002, 2143, 2311, 2726 |
| PflFI | GACNNNGTC | 1 cut(s) | 1551 |
| PfoI | TCCNGGA | 1 cut(s) | 2809 |
| PinAI | ACCGGT | 1 cut(s) | 1946 |
| PkrI | GCNGC | 9 cut(s) | 129, 132, 374, 1701, 2126, 2286, 2705, 3296, 3359 |
| Ple19I | CGATCG | 1 cut(s) | 231 |
| PleI | GAGTC | 4 cut(s) | 1534, 2358, 2484, 2849 |
| PmaCI | CACGTG | 3 cut(s) | 264, 3132, 3150 |
| PmlI | CACGTG | 3 cut(s) | 264, 3132, 3150 |
| PpsI | GAGTC | 4 cut(s) | 1534, 2358, 2484, 2849 |
| Ppu21I | YACGTR | 4 cut(s) | 92, 264, 3132, 3150 |
| PpuMI | RGGWCCY | 1 cut(s) | 1932 |
| PshAI | GACNNNNGTC | 1 cut(s) | 783 |
| PsiI | TTATAA | 1 cut(s) | 2276 |
| Psp5II | RGGWCCY | 1 cut(s) | 1932 |
| Psp6I | CCWGG | 3 cut(s) | 1540, 1801, 2809 |
| PspCI | CACGTG | 3 cut(s) | 264, 3132, 3150 |
| PspGI | CCWGG | 3 cut(s) | 1540, 1801, 2809 |
| PspN4I | GGNNCC | 7 cut(s) | 345, 574, 1934, 2367, 2696, 2772, 3334 |
| PspPI | GGNCC | 2 cut(s) | 1733, 1932 |
| PspPPI | RGGWCCY | 1 cut(s) | 1932 |
| PspXI | VCTCGAGB | 1 cut(s) | 3183 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1410, 1442 |
| PstI | CTGCAG | 1 cut(s) | 3403 |
| PsuI | RGATCY | 3 cut(s) | 343, 2659, 2977 |
| PsyI | GACNNNGTC | 1 cut(s) | 1551 |
| PvuI | CGATCG | 1 cut(s) | 231 |
| PvuII | CAGCTG | 2 cut(s) | 1084, 3262 |
| RsaI | GTAC | 8 cut(s) | 1017, 1208, 1363, 1987, 2638, 2934, 3022, 3242 |
| RsaNI | GTAC | 8 cut(s) | 1016, 1207, 1362, 1986, 2637, 2933, 3021, 3241 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2235, 3212 |
| SapI | GCTCTTC | 2 cut(s) | 1083, 1530 |
| SatI | GCNGC | 9 cut(s) | 128, 131, 373, 1700, 2125, 2285, 2704, 3295, 3358 |
| Sau3AI | GATC | 9 cut(s) | 157, 228, 343, 925, 1903, 2659, 2977, 3067, 3264 |
| Sau96I | GGNCC | 2 cut(s) | 1733, 1932 |
| SchI | GAGTC | 4 cut(s) | 1535, 2359, 2484, 2849 |
| ScrFI | CCNGG | 3 cut(s) | 1542, 1803, 2811 |
| SduI | GDGCHC | 6 cut(s) | 14, 2232, 2926, 3238, 3249, 3380 |
| SexAI | ACCWGGT | 1 cut(s) | 1801 |
| SfaNI | GCATC | 8 cut(s) | 436, 559, 589, 753, 1741, 2872, 3096, 3194 |
| SfcI | CTRYAG | 4 cut(s) | 1250, 3030, 3189, 3399 |
| Sfr274I | CTCGAG | 1 cut(s) | 3183 |
| SfuI | TTCGAA | 1 cut(s) | 3174 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1946 |
| SinI | GGWCC | 1 cut(s) | 1932 |
| SlaI | CTCGAG | 1 cut(s) | 3183 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2235, 3212 |
| SmlI | CTYRAG | 8 cut(s) | 1756, 1924, 1961, 2233, 2303, 2713, 2937, 3183 |
| SmoI | CTYRAG | 8 cut(s) | 1756, 1924, 1961, 2233, 2303, 2713, 2937, 3183 |
| SpeI | ACTAGT | 2 cut(s) | 706, 1018 |
| SsiI | CCGC | 5 cut(s) | 130, 774, 899, 2758, 3367 |
| SspI | AATATT | 2 cut(s) | 1852, 3392 |
| SspMI | CTAG | 7 cut(s) | 707, 788, 908, 1002, 1019, 2730, 3353 |
| StyD4I | CCNGG | 3 cut(s) | 1540, 1801, 2809 |
| StyI | CCWWGG | 3 cut(s) | 781, 2876, 3336 |
| TaaI | ACNGT | 9 cut(s) | 282, 537, 1148, 1273, 2426, 2481, 3031, 3119, 3240 |
| TaiI | ACGT | 6 cut(s) | 63, 94, 266, 3134, 3152, 3167 |
| TaqI | TCGA | 5 cut(s) | 218, 1464, 1902, 3174, 3184 |
| TatI | WGTACW | 4 cut(s) | 1015, 1206, 1361, 2636 |
| TauI | GCSGC | 1 cut(s) | 133 |
| TfiI | GAWTC | 9 cut(s) | 138, 289, 864, 987, 1663, 2002, 2143, 2311, 2726 |
| TscAI | CASTG | 6 cut(s) | 540, 1151, 2486, 2754, 3034, 3243 |
| TseFI | GTSAC | 2 cut(s) | 1021, 2606 |
| TseI | GCWGC | 8 cut(s) | 127, 372, 1699, 2124, 2284, 2703, 3294, 3357 |
| Tsp45I | GTSAC | 2 cut(s) | 1021, 2606 |
| TspGWI | ACGGA | 3 cut(s) | 2786, 2937, 3269 |
| TspRI | CASTG | 6 cut(s) | 540, 1151, 2486, 2754, 3034, 3243 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1551 |
| Vha464I | CTTAAG | 1 cut(s) | 2303 |
| VpaK11BI | GGWCC | 1 cut(s) | 1932 |
| XceI | RCATGY | 3 cut(s) | 1016, 1347, 2889 |
| XhoI | CTCGAG | 1 cut(s) | 3183 |
| XmiI | GTMKAC | 1 cut(s) | 1219 |
| XmnI | GAANNNNTTC | 7 cut(s) | 387, 769, 837, 1077, 1100, 1515, 2390 |
| XspI | CTAG | 7 cut(s) | 707, 788, 908, 1002, 1019, 2730, 3353 |
| Zsp2I | ATGCAT | 3 cut(s) | 302, 2887, 3209 |