TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| PPR_2 | PF13041 | 293 - 342 | 3.5e-07 | PPR repeat family |
| PPR_3 | PF13812 | 356 - 417 | 1.7e-07 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 403 - 435 | 4.9e-11 | PPR repeat |
| PPR_2 | PF13041 | 407 - 456 | 4.3e-17 | PPR repeat family |
| PPR_long | PF17177 | 424 - 555 | 3.9e-07 | Pentacotripeptide-repeat region of PRORP |
| PPR_3 | PF13812 | 432 - 489 | 7.4e-10 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 438 - 470 | 2.2e-11 | PPR repeat |
| PPR_2 | PF13041 | 442 - 490 | 2.2e-17 | PPR repeat family |
| PPR | PF01535 | 445 - 475 | 3.6e-08 | PPR repeat |
| MRP-S27 | PF10037 | 447 - 508 | 9e-07 | Mitochondrial 28S ribosomal protein S27 |
| PPR_1 | PF12854 | 473 - 505 | 4.4e-09 | PPR repeat |
| PPR_2 | PF13041 | 478 - 525 | 6.6e-14 | PPR repeat family |
| TPR_24 | PF23276 | 481 - 575 | 3e-07 | Fungal tetratrico peptide repeats |
| PPR_3 | PF13812 | 500 - 546 | 5.9e-06 | Pentatricopeptide repeat domain |
| PPR_1 | PF12854 | 508 - 540 | 1.8e-11 | PPR repeat |
| PPR | PF01535 | 515 - 544 | 1.8e-07 | PPR repeat |
| PPR_2 | PF13041 | 519 - 561 | 7.3e-10 | PPR repeat family |
| PPR_1 | PF12854 | 543 - 575 | 3.5e-08 | PPR repeat |
| PPR_2 | PF13041 | 548 - 596 | 2.2e-16 | PPR repeat family |
| PPR | PF01535 | 551 - 576 | 2.6e-07 | PPR repeat |
| PPR_1 | PF12854 | 579 - 609 | 2.2e-11 | PPR repeat |
| PPR_2 | PF13041 | 582 - 623 | 2.1e-11 | PPR repeat family |
| PPR | PF01535 | 585 - 614 | 8e-07 | PPR repeat |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 564 |
| Acc36I | ACCTGC | 1 cut(s) | 564 |
| AccBSI | CCGCTC | 1 cut(s) | 491 |
| AccII | CGCG | 3 cut(s) | 76, 868, 1487 |
| AccIII | TCCGGA | 1 cut(s) | 1744 |
| AciI | CCGC | 7 cut(s) | 65, 489, 543, 646, 781, 1487, 1919 |
| AclWI | GGATC | 3 cut(s) | 306, 378, 1890 |
| AcoI | YGGCCR | 2 cut(s) | 486, 1840 |
| AcsI | RAATTY | 3 cut(s) | 82, 188, 1158 |
| AcuI | CTGAAG | 1 cut(s) | 1167 |
| AcyI | GRCGYC | 2 cut(s) | 834, 1092 |
| AfaI | GTAC | 4 cut(s) | 327, 398, 596, 1471 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1228 |
| AhlI | ACTAGT | 2 cut(s) | 1270, 1738 |
| AjnI | CCWGG | 1 cut(s) | 1087 |
| AluBI | AGCT | 6 cut(s) | 250, 507, 705, 1047, 1388, 1914 |
| AluI | AGCT | 6 cut(s) | 250, 507, 705, 1047, 1388, 1914 |
| Alw26I | GTCTC | 3 cut(s) | 41, 183, 547 |
| AlwI | GGATC | 3 cut(s) | 306, 378, 1890 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 683 |
| Ama87I | CYCGRG | 1 cut(s) | 1130 |
| Aor13HI | TCCGGA | 1 cut(s) | 1744 |
| AoxI | GGCC | 4 cut(s) | 486, 582, 1372, 1840 |
| ApaI | GGGCCC | 1 cut(s) | 586 |
| ApeKI | GCWGC | 2 cut(s) | 507, 1151 |
| ApoI | RAATTY | 3 cut(s) | 82, 188, 1158 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 40, 72 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 466, 845, 858, 1740 |
| AspS9I | GGNCC | 3 cut(s) | 582, 583, 692 |
| AsuHPI | GGTGA | 3 cut(s) | 1087, 1333, 1432 |
| AvaI | CYCGRG | 1 cut(s) | 1130 |
| AvaII | GGWCC | 1 cut(s) | 692 |
| BaeGI | GKGCMC | 1 cut(s) | 586 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1257, 1290 |
| BalI | TGGCCA | 1 cut(s) | 1842 |
| BanII | GRGCYC | 2 cut(s) | 586, 1877 |
| BbsI | GAAGAC | 2 cut(s) | 1073, 1429 |
| BbvCI | CCTCAGC | 1 cut(s) | 684 |
| BbvI | GCAGC | 2 cut(s) | 494, 1163 |
| BccI | CCATC | 6 cut(s) | 194, 201, 376, 752, 1250, 1559 |
| BceAI | ACGGC | 2 cut(s) | 160, 1135 |
| BciT130I | CCWGG | 1 cut(s) | 1089 |
| BciVI | GTATCC | 2 cut(s) | 490, 1741 |
| BclI | TGATCA | 1 cut(s) | 985 |
| BcoDI | GTCTC | 3 cut(s) | 41, 183, 547 |
| BcuI | ACTAGT | 2 cut(s) | 1270, 1738 |
| BfaI | CTAG | 3 cut(s) | 182, 1271, 1739 |
| BfuAI | ACCTGC | 1 cut(s) | 564 |
| BfuI | GTATCC | 2 cut(s) | 490, 1741 |
| BisI | GCNGC | 3 cut(s) | 489, 508, 1152 |
| BlpI | GCTNAGC | 1 cut(s) | 1915 |
| BlsI | GCNGC | 3 cut(s) | 490, 509, 1153 |
| Bme1390I | CCNGG | 1 cut(s) | 1089 |
| Bme18I | GGWCC | 1 cut(s) | 692 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1228 |
| BmeT110I | CYCGRG | 1 cut(s) | 1130 |
| BmgT120I | GGNCC | 3 cut(s) | 582, 583, 692 |
| BmiI | GGNNCC | 4 cut(s) | 583, 584, 1323, 1633 |
| BmrFI | CCNGG | 1 cut(s) | 1089 |
| BmsI | GCATC | 3 cut(s) | 1202, 1270, 1393 |
| BpiI | GAAGAC | 2 cut(s) | 1073, 1429 |
| BpmI | CTGGAG | 2 cut(s) | 578, 1308 |
| Bpu10I | CCTNAGC | 4 cut(s) | 476, 492, 684, 1190 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1915 |
| BpuEI | CTTGAG | 1 cut(s) | 719 |
| BsaHI | GRCGYC | 2 cut(s) | 834, 1092 |
| BsaJI | CCNNGG | 2 cut(s) | 305, 1635 |
| BsaWI | WCCGGW | 2 cut(s) | 295, 1744 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 38, 68, 285, 315 |
| Bse1I | ACTGG | 3 cut(s) | 561, 1146, 1375 |
| Bse3DI | GCAATG | 2 cut(s) | 1290, 1413 |
| BseAI | TCCGGA | 1 cut(s) | 1744 |
| BseBI | CCWGG | 1 cut(s) | 1089 |
| BseDI | CCNNGG | 2 cut(s) | 305, 1635 |
| BseGI | GGATG | 2 cut(s) | 1217, 1570 |
| BseMI | GCAATG | 2 cut(s) | 1290, 1413 |
| BseMII | CTCAG | 4 cut(s) | 506, 675, 1311, 1815 |
| BseNI | ACTGG | 3 cut(s) | 561, 1146, 1375 |
| BseRI | GAGGAG | 4 cut(s) | 686, 818, 821, 824 |
| BseSI | GKGCMC | 1 cut(s) | 586 |
| BseXI | GCAGC | 2 cut(s) | 494, 1163 |
| BseYI | CCCAGC | 1 cut(s) | 970 |
| Bsh1236I | CGCG | 3 cut(s) | 76, 868, 1487 |
| BshFI | GGCC | 4 cut(s) | 488, 584, 1374, 1842 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1130 |
| BsiSI | CCGG | 2 cut(s) | 296, 1745 |
| BsmAI | GTCTC | 3 cut(s) | 41, 183, 547 |
| BsmBI | CGTCTC | 1 cut(s) | 183 |
| BsnI | GGCC | 4 cut(s) | 488, 584, 1374, 1842 |
| BsoBI | CYCGRG | 1 cut(s) | 1130 |
| Bsp120I | GGGCCC | 1 cut(s) | 582 |
| Bsp1286I | GDGCHC | 2 cut(s) | 586, 1877 |
| Bsp13I | TCCGGA | 1 cut(s) | 1744 |
| Bsp143I | GATC | 7 cut(s) | 298, 383, 985, 1612, 1692, 1777, 1895 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1915 |
| Bsp19I | CCATGG | 2 cut(s) | 305, 1635 |
| Bsp68I | TCGCGA | 1 cut(s) | 76 |
| BspACI | CCGC | 7 cut(s) | 65, 489, 543, 646, 781, 1487, 1919 |
| BspANI | GGCC | 4 cut(s) | 488, 584, 1374, 1842 |
| BspCNI | CTCAG | 4 cut(s) | 505, 676, 1310, 1816 |
| BspEI | TCCGGA | 1 cut(s) | 1744 |
| BspFNI | CGCG | 3 cut(s) | 76, 868, 1487 |
| BspLI | GGNNCC | 4 cut(s) | 583, 584, 1323, 1633 |
| BspMI | ACCTGC | 1 cut(s) | 564 |
| BspPI | GGATC | 3 cut(s) | 306, 378, 1890 |
| BsrBI | CCGCTC | 1 cut(s) | 491 |
| BsrDI | GCAATG | 2 cut(s) | 1290, 1413 |
| BsrI | ACTGG | 3 cut(s) | 561, 1146, 1375 |
| BssECI | CCNNGG | 2 cut(s) | 305, 1635 |
| BssMI | GATC | 7 cut(s) | 298, 383, 985, 1612, 1692, 1777, 1895 |
| BssNI | GRCGYC | 2 cut(s) | 834, 1092 |
| BssT1I | CCWWGG | 2 cut(s) | 305, 1635 |
| Bst2UI | CCWGG | 1 cut(s) | 1089 |
| Bst4CI | ACNGT | 5 cut(s) | 418, 1499, 1553, 1574, 1753 |
| Bst6I | CTCTTC | 1 cut(s) | 225 |
| BstACI | GRCGYC | 2 cut(s) | 834, 1092 |
| BstC8I | GCNNGC | 4 cut(s) | 69, 229, 1217, 1921 |
| BstDSI | CCRYGG | 2 cut(s) | 305, 1635 |
| BstF5I | GGATG | 2 cut(s) | 1217, 1570 |
| BstFNI | CGCG | 3 cut(s) | 76, 868, 1487 |
| BstKTI | GATC | 7 cut(s) | 301, 386, 988, 1615, 1695, 1780, 1898 |
| BstMAI | GTCTC | 3 cut(s) | 41, 183, 547 |
| BstMBI | GATC | 7 cut(s) | 298, 383, 985, 1612, 1692, 1777, 1895 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 73, 129, 237, 865, 874, 1151, 1371, 1920 |
| BstNI | CCWGG | 1 cut(s) | 1089 |
| BstSCI | CCNGG | 1 cut(s) | 1087 |
| BstSLI | GKGCMC | 1 cut(s) | 586 |
| BstUI | CGCG | 3 cut(s) | 76, 868, 1487 |
| BstV1I | GCAGC | 2 cut(s) | 494, 1163 |
| BstV2I | GAAGAC | 2 cut(s) | 1073, 1429 |
| BstX2I | RGATCY | 3 cut(s) | 298, 383, 1895 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 200, 1501 |
| BstYI | RGATCY | 3 cut(s) | 298, 383, 1895 |
| BsuI | GTATCC | 2 cut(s) | 490, 1741 |
| BsuRI | GGCC | 4 cut(s) | 488, 584, 1374, 1842 |
| BtgI | CCRYGG | 2 cut(s) | 305, 1635 |
| BtsCI | GGATG | 2 cut(s) | 1217, 1570 |
| BtsIMutI | CAGTG | 2 cut(s) | 1382, 1504 |
| BtuMI | TCGCGA | 1 cut(s) | 76 |
| BveI | ACCTGC | 1 cut(s) | 564 |
| Cac8I | GCNNGC | 4 cut(s) | 69, 229, 1217, 1921 |
| CaiI | CAGNNNCTG | 1 cut(s) | 683 |
| Cfr13I | GGNCC | 3 cut(s) | 582, 583, 692 |
| CseI | GACGC | 4 cut(s) | 101, 842, 857, 1081 |
| Csp6I | GTAC | 4 cut(s) | 326, 397, 595, 1470 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1753, 1788 |
| CviAII | CATG | 6 cut(s) | 118, 306, 851, 1198, 1355, 1636 |
| CviQI | GTAC | 4 cut(s) | 326, 397, 595, 1470 |
| DpnI | GATC | 7 cut(s) | 300, 385, 987, 1614, 1694, 1779, 1897 |
| DpnII | GATC | 7 cut(s) | 298, 383, 985, 1612, 1692, 1777, 1895 |
| DraI | TTTAAA | 1 cut(s) | 139 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1228 |
| EaeI | YGGCCR | 2 cut(s) | 486, 1840 |
| Eam1104I | CTCTTC | 1 cut(s) | 225 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1228 |
| EarI | CTCTTC | 1 cut(s) | 225 |
| Eco130I | CCWWGG | 2 cut(s) | 305, 1635 |
| Eco24I | GRGCYC | 2 cut(s) | 586, 1877 |
| Eco47I | GGWCC | 1 cut(s) | 692 |
| Eco57I | CTGAAG | 1 cut(s) | 1167 |
| Eco88I | CYCGRG | 1 cut(s) | 1130 |
| EcoO109I | RGGNCCY | 1 cut(s) | 582 |
| EcoRI | GAATTC | 1 cut(s) | 188 |
| EcoRII | CCWGG | 1 cut(s) | 1087 |
| EcoT14I | CCWWGG | 2 cut(s) | 305, 1635 |
| EcoT38I | GRGCYC | 2 cut(s) | 586, 1877 |
| ErhI | CCWWGG | 2 cut(s) | 305, 1635 |
| Esp3I | CGTCTC | 1 cut(s) | 183 |
| FaeI | CATG | 6 cut(s) | 121, 309, 854, 1201, 1358, 1639 |
| FatI | CATG | 6 cut(s) | 117, 305, 850, 1197, 1354, 1635 |
| FauI | CCCGC | 2 cut(s) | 536, 1912 |
| FbaI | TGATCA | 1 cut(s) | 985 |
| Fnu4HI | GCNGC | 3 cut(s) | 489, 508, 1152 |
| FokI | GGATG | 2 cut(s) | 1224, 1577 |
| FriOI | GRGCYC | 2 cut(s) | 586, 1877 |
| Fsp4HI | GCNGC | 3 cut(s) | 489, 508, 1152 |
| FspBI | CTAG | 3 cut(s) | 182, 1271, 1739 |
| GluI | GCNGC | 3 cut(s) | 489, 508, 1152 |
| GsaI | CCCAGC | 1 cut(s) | 974 |
| GsuI | CTGGAG | 2 cut(s) | 578, 1308 |
| HaeIII | GGCC | 4 cut(s) | 488, 584, 1374, 1842 |
| HapII | CCGG | 2 cut(s) | 296, 1745 |
| HgaI | GACGC | 4 cut(s) | 101, 842, 857, 1081 |
| Hin1I | GRCGYC | 2 cut(s) | 834, 1092 |
| Hin1II | CATG | 6 cut(s) | 121, 309, 854, 1201, 1358, 1639 |
| HindIII | AAGCTT | 1 cut(s) | 248 |
| HinfI | GANTC | 9 cut(s) | 53, 148, 649, 716, 732, 784, 907, 1351, 1516 |
| HpaII | CCGG | 2 cut(s) | 296, 1745 |
| HphI | GGTGA | 3 cut(s) | 1087, 1333, 1432 |
| Hpy166II | GTNNAC | 1 cut(s) | 791 |
| Hpy188I | TCNGA | 4 cut(s) | 364, 1300, 1617, 1825 |
| Hpy8I | GTNNAC | 1 cut(s) | 791 |
| Hpy99I | CGWCG | 1 cut(s) | 533 |
| HpyAV | CCTTC | 8 cut(s) | 440, 683, 759, 835, 888, 1111, 1453, 1469 |
| HpyCH4III | ACNGT | 5 cut(s) | 418, 1499, 1553, 1574, 1753 |
| HpyCH4IV | ACGT | 1 cut(s) | 1329 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 73, 129, 237, 865, 874, 1151, 1371, 1920 |
| HpySE526I | ACGT | 1 cut(s) | 1329 |
| Hsp92I | GRCGYC | 2 cut(s) | 834, 1092 |
| Hsp92II | CATG | 6 cut(s) | 121, 309, 854, 1201, 1358, 1639 |
| Kpn2I | TCCGGA | 1 cut(s) | 1744 |
| Ksp22I | TGATCA | 1 cut(s) | 985 |
| Kzo9I | GATC | 7 cut(s) | 298, 383, 985, 1612, 1692, 1777, 1895 |
| LmnI | GCTCC | 4 cut(s) | 985, 1327, 1637, 1656 |
| Lsp1109I | GCAGC | 2 cut(s) | 494, 1163 |
| LweI | GCATC | 3 cut(s) | 1202, 1270, 1393 |
| MaeI | CTAG | 3 cut(s) | 182, 1271, 1739 |
| MaeII | ACGT | 1 cut(s) | 1329 |
| MaeIII | GTNAC | 8 cut(s) | 113, 214, 662, 797, 1093, 1333, 1568, 1753 |
| MalI | GATC | 7 cut(s) | 300, 385, 987, 1614, 1694, 1779, 1897 |
| MbiI | CCGCTC | 1 cut(s) | 491 |
| MboI | GATC | 7 cut(s) | 298, 383, 985, 1612, 1692, 1777, 1895 |
| MboII | GAAGA | 9 cut(s) | 197, 212, 725, 752, 774, 1060, 1073, 1214, 1429 |
| MfeI | CAATTG | 1 cut(s) | 421 |
| MflI | RGATCY | 3 cut(s) | 298, 383, 1895 |
| MhlI | GDGCHC | 2 cut(s) | 586, 1877 |
| MlsI | TGGCCA | 1 cut(s) | 1842 |
| MluNI | TGGCCA | 1 cut(s) | 1842 |
| MlyI | GAGTC | 6 cut(s) | 62, 157, 658, 726, 793, 901 |
| MmeI | TCCRAC | 1 cut(s) | 1634 |
| Mox20I | TGGCCA | 1 cut(s) | 1842 |
| MroI | TCCGGA | 1 cut(s) | 1744 |
| MroXI | GAANNNNTTC | 4 cut(s) | 466, 845, 858, 1740 |
| MscI | TGGCCA | 1 cut(s) | 1842 |
| MslI | CAYNNNNRTG | 1 cut(s) | 198 |
| Msp20I | TGGCCA | 1 cut(s) | 1842 |
| MspA1I | CMGCKG | 1 cut(s) | 1919 |
| MspI | CCGG | 2 cut(s) | 296, 1745 |
| MspR9I | CCNGG | 1 cut(s) | 1089 |
| MunI | CAATTG | 1 cut(s) | 421 |
| MvaI | CCWGG | 1 cut(s) | 1089 |
| MvnI | CGCG | 3 cut(s) | 76, 868, 1487 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 73, 129, 237, 865, 874, 1151, 1371, 1920 |
| NcoI | CCATGG | 2 cut(s) | 305, 1635 |
| NdeII | GATC | 7 cut(s) | 298, 383, 985, 1612, 1692, 1777, 1895 |
| NlaIII | CATG | 6 cut(s) | 121, 309, 854, 1201, 1358, 1639 |
| NlaIV | GGNNCC | 4 cut(s) | 583, 584, 1323, 1633 |
| NmuCI | GTSAC | 4 cut(s) | 113, 662, 797, 1093 |
| NruI | TCGCGA | 1 cut(s) | 76 |
| PaeR7I | CTCGAG | 1 cut(s) | 1130 |
| PaqCI | CACCTGC | 1 cut(s) | 564 |
| PdmI | GAANNNNTTC | 4 cut(s) | 466, 845, 858, 1740 |
| PfeI | GAWTC | 3 cut(s) | 716, 1351, 1516 |
| PflFI | GACNNNGTC | 1 cut(s) | 52 |
| PkrI | GCNGC | 3 cut(s) | 490, 509, 1153 |
| PleI | GAGTC | 6 cut(s) | 61, 156, 657, 726, 792, 901 |
| PpsI | GAGTC | 6 cut(s) | 61, 156, 657, 726, 792, 901 |
| Psp6I | CCWGG | 1 cut(s) | 1087 |
| PspFI | CCCAGC | 1 cut(s) | 970 |
| PspGI | CCWGG | 1 cut(s) | 1087 |
| PspN4I | GGNNCC | 4 cut(s) | 583, 584, 1323, 1633 |
| PspOMI | GGGCCC | 1 cut(s) | 582 |
| PspPI | GGNCC | 3 cut(s) | 582, 583, 692 |
| PstNI | CAGNNNCTG | 1 cut(s) | 683 |
| PsuI | RGATCY | 3 cut(s) | 298, 383, 1895 |
| PsyI | GACNNNGTC | 1 cut(s) | 52 |
| RruI | TCGCGA | 1 cut(s) | 76 |
| RsaI | GTAC | 4 cut(s) | 327, 398, 596, 1471 |
| RsaNI | GTAC | 4 cut(s) | 326, 397, 595, 1470 |
| RseI | CAYNNNNRTG | 1 cut(s) | 198 |
| SatI | GCNGC | 3 cut(s) | 489, 508, 1152 |
| Sau3AI | GATC | 7 cut(s) | 298, 383, 985, 1612, 1692, 1777, 1895 |
| Sau96I | GGNCC | 3 cut(s) | 582, 583, 692 |
| SchI | GAGTC | 6 cut(s) | 62, 157, 658, 726, 793, 901 |
| ScrFI | CCNGG | 1 cut(s) | 1089 |
| SduI | GDGCHC | 2 cut(s) | 586, 1877 |
| SfaNI | GCATC | 3 cut(s) | 1202, 1270, 1393 |
| Sfr274I | CTCGAG | 1 cut(s) | 1130 |
| SinI | GGWCC | 1 cut(s) | 692 |
| SlaI | CTCGAG | 1 cut(s) | 1130 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 198 |
| SmlI | CTYRAG | 2 cut(s) | 734, 1130 |
| SmoI | CTYRAG | 2 cut(s) | 734, 1130 |
| SpeI | ACTAGT | 2 cut(s) | 1270, 1738 |
| SsiI | CCGC | 7 cut(s) | 65, 489, 543, 646, 781, 1487, 1919 |
| SspI | AATATT | 4 cut(s) | 465, 539, 659, 932 |
| SspMI | CTAG | 3 cut(s) | 182, 1271, 1739 |
| StyD4I | CCNGG | 1 cut(s) | 1087 |
| StyI | CCWWGG | 2 cut(s) | 305, 1635 |
| TaaI | ACNGT | 5 cut(s) | 418, 1499, 1553, 1574, 1753 |
| TaiI | ACGT | 1 cut(s) | 1332 |
| TaqI | TCGA | 4 cut(s) | 528, 756, 1131, 1695 |
| TaqII | GACCGA | 1 cut(s) | 330 |
| TatI | WGTACW | 1 cut(s) | 396 |
| TauI | GCSGC | 1 cut(s) | 491 |
| TfiI | GAWTC | 3 cut(s) | 716, 1351, 1516 |
| TscAI | CASTG | 2 cut(s) | 1382, 1504 |
| TseFI | GTSAC | 4 cut(s) | 113, 662, 797, 1093 |
| TseI | GCWGC | 2 cut(s) | 507, 1151 |
| Tsp45I | GTSAC | 4 cut(s) | 113, 662, 797, 1093 |
| TspDTI | ATGAA | 6 cut(s) | 459, 834, 867, 1301, 1343, 1637 |
| TspGWI | ACGGA | 2 cut(s) | 1487, 1604 |
| TspRI | CASTG | 2 cut(s) | 1382, 1504 |
| Tth111I | GACNNNGTC | 1 cut(s) | 52 |
| VpaK11BI | GGWCC | 1 cut(s) | 692 |
| XapI | RAATTY | 3 cut(s) | 82, 188, 1158 |
| XbaI | TCTAGA | 1 cut(s) | 181 |
| XhoI | CTCGAG | 1 cut(s) | 1130 |
| XmnI | GAANNNNTTC | 4 cut(s) | 466, 845, 858, 1740 |
| XspI | CTAG | 3 cut(s) | 182, 1271, 1739 |