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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 247 |
| AccBSI | CCGCTC | 1 cut(s) | 546 |
| AccI | GTMKAC | 1 cut(s) | 498 |
| AciI | CCGC | 8 cut(s) | 261, 265, 356, 363, 466, 538, 541, 544 |
| AclWI | GGATC | 2 cut(s) | 586, 599 |
| AcoI | YGGCCR | 4 cut(s) | 262, 335, 412, 432 |
| AcsI | RAATTY | 1 cut(s) | 324 |
| AcyI | GRCGYC | 1 cut(s) | 248 |
| AfaI | GTAC | 1 cut(s) | 162 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 115, 244, 257, 278, 299, 320, 337, 634 |
| AgsI | TTSAA | 4 cut(s) | 43, 68, 79, 89 |
| AluBI | AGCT | 1 cut(s) | 74 |
| AluI | AGCT | 1 cut(s) | 74 |
| Alw26I | GTCTC | 1 cut(s) | 524 |
| AlwI | GGATC | 2 cut(s) | 586, 599 |
| AoxI | GGCC | 6 cut(s) | 45, 262, 335, 412, 432, 566 |
| ApeKI | GCWGC | 3 cut(s) | 127, 455, 619 |
| ApoI | RAATTY | 1 cut(s) | 324 |
| AspLEI | GCGC | 1 cut(s) | 250 |
| AsuC2I | CCSGG | 1 cut(s) | 239 |
| AsuHPI | GGTGA | 4 cut(s) | 133, 247, 303, 482 |
| BamHI | GGATCC | 1 cut(s) | 591 |
| BanI | GGYRCC | 1 cut(s) | 247 |
| BanII | GRGCYC | 1 cut(s) | 244 |
| BbsI | GAAGAC | 3 cut(s) | 96, 224, 566 |
| BbvI | GCAGC | 3 cut(s) | 139, 467, 606 |
| BccI | CCATC | 4 cut(s) | 106, 155, 203, 492 |
| BceAI | ACGGC | 3 cut(s) | 281, 350, 350 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 256, 290, 601, 635 |
| BcnI | CCSGG | 1 cut(s) | 239 |
| BcoDI | GTCTC | 1 cut(s) | 524 |
| BfaI | CTAG | 1 cut(s) | 623 |
| BfmI | CTRYAG | 1 cut(s) | 453 |
| BfoI | RGCGCY | 1 cut(s) | 251 |
| BisI | GCNGC | 7 cut(s) | 128, 262, 265, 456, 541, 544, 620 |
| BlsI | GCNGC | 7 cut(s) | 129, 263, 266, 457, 542, 545, 621 |
| Bme1390I | CCNGG | 1 cut(s) | 239 |
| BmiI | GGNNCC | 3 cut(s) | 243, 249, 593 |
| BmrFI | CCNGG | 1 cut(s) | 239 |
| BmsI | GCATC | 2 cut(s) | 114, 682 |
| BoxI | GACNNNNGTC | 1 cut(s) | 680 |
| BpiI | GAAGAC | 3 cut(s) | 96, 224, 566 |
| BpuMI | CCSGG | 1 cut(s) | 239 |
| BsaBI | GATNNNNATC | 1 cut(s) | 590 |
| BsaHI | GRCGYC | 1 cut(s) | 248 |
| BsaWI | WCCGGW | 1 cut(s) | 320 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 427, 457, 465, 495 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 115, 244, 257, 278, 299, 320, 337, 634 |
| Bse118I | RCCGGY | 1 cut(s) | 257 |
| Bse1I | ACTGG | 2 cut(s) | 251, 314 |
| Bse8I | GATNNNNATC | 1 cut(s) | 590 |
| BseGI | GGATG | 4 cut(s) | 352, 484, 534, 643 |
| BseJI | GATNNNNATC | 1 cut(s) | 590 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 115, 244, 257, 278, 299, 320, 337, 634 |
| BseNI | ACTGG | 2 cut(s) | 251, 314 |
| BseRI | GAGGAG | 2 cut(s) | 386, 522 |
| BseX3I | CGGCCG | 2 cut(s) | 262, 335 |
| BseXI | GCAGC | 3 cut(s) | 139, 467, 606 |
| BseYI | CCCAGC | 1 cut(s) | 135 |
| Bsh1285I | CGRYCG | 5 cut(s) | 265, 276, 338, 605, 678 |
| BshFI | GGCC | 6 cut(s) | 47, 264, 337, 414, 434, 568 |
| BshNI | GGYRCC | 1 cut(s) | 247 |
| BsiEI | CGRYCG | 5 cut(s) | 265, 276, 338, 605, 678 |
| BsiSI | CCGG | 7 cut(s) | 227, 238, 245, 258, 279, 321, 338 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 115, 244, 257, 278, 299, 320, 337, 634 |
| BsmAI | GTCTC | 1 cut(s) | 524 |
| BsmI | GAATGC | 1 cut(s) | 267 |
| BsnI | GGCC | 6 cut(s) | 47, 264, 337, 414, 434, 568 |
| Bsp1286I | GDGCHC | 1 cut(s) | 244 |
| Bsp1407I | TGTACA | 1 cut(s) | 160 |
| Bsp143I | GATC | 7 cut(s) | 49, 273, 308, 511, 580, 591, 669 |
| BspACI | CCGC | 8 cut(s) | 261, 265, 356, 363, 466, 538, 541, 544 |
| BspANI | GGCC | 6 cut(s) | 47, 264, 337, 414, 434, 568 |
| BspLI | GGNNCC | 3 cut(s) | 243, 249, 593 |
| BspMAI | CTGCAG | 1 cut(s) | 457 |
| BspPI | GGATC | 2 cut(s) | 586, 599 |
| BspT107I | GGYRCC | 1 cut(s) | 247 |
| BsrBI | CCGCTC | 1 cut(s) | 546 |
| BsrFI | RCCGGY | 1 cut(s) | 257 |
| BsrGI | TGTACA | 1 cut(s) | 160 |
| BsrI | ACTGG | 2 cut(s) | 251, 314 |
| BssAI | RCCGGY | 1 cut(s) | 257 |
| BssMI | GATC | 7 cut(s) | 49, 273, 308, 511, 580, 591, 669 |
| BssNI | GRCGYC | 1 cut(s) | 248 |
| Bst4CI | ACNGT | 2 cut(s) | 503, 679 |
| BstACI | GRCGYC | 1 cut(s) | 248 |
| BstAUI | TGTACA | 1 cut(s) | 160 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 632 |
| BstF5I | GGATG | 4 cut(s) | 352, 484, 534, 643 |
| BstH2I | RGCGCY | 1 cut(s) | 251 |
| BstHHI | GCGC | 1 cut(s) | 250 |
| BstKTI | GATC | 7 cut(s) | 52, 276, 311, 514, 583, 594, 672 |
| BstMAI | GTCTC | 1 cut(s) | 524 |
| BstMBI | GATC | 7 cut(s) | 49, 273, 308, 511, 580, 591, 669 |
| BstMCI | CGRYCG | 5 cut(s) | 265, 276, 338, 605, 678 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 136, 239 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 680 |
| BstSCI | CCNGG | 1 cut(s) | 237 |
| BstSFI | CTRYAG | 1 cut(s) | 453 |
| BstV1I | GCAGC | 3 cut(s) | 139, 467, 606 |
| BstV2I | GAAGAC | 3 cut(s) | 96, 224, 566 |
| BstX2I | RGATCY | 1 cut(s) | 591 |
| BstYI | RGATCY | 1 cut(s) | 591 |
| BstZI | CGGCCG | 2 cut(s) | 262, 335 |
| BsuRI | GGCC | 6 cut(s) | 47, 264, 337, 414, 434, 568 |
| BtsCI | GGATG | 4 cut(s) | 352, 484, 534, 643 |
| BtsIMutI | CAGTG | 1 cut(s) | 321 |
| CciNI | GCGGCCGC | 1 cut(s) | 262 |
| CfoI | GCGC | 1 cut(s) | 250 |
| Cfr10I | RCCGGY | 1 cut(s) | 257 |
| Csp6I | GTAC | 1 cut(s) | 161 |
| CviAII | CATG | 1 cut(s) | 597 |
| CviQI | GTAC | 1 cut(s) | 161 |
| DinI | GGCGCC | 1 cut(s) | 249 |
| DpnI | GATC | 7 cut(s) | 51, 275, 310, 513, 582, 593, 671 |
| DpnII | GATC | 7 cut(s) | 49, 273, 308, 511, 580, 591, 669 |
| EaeI | YGGCCR | 4 cut(s) | 262, 335, 412, 432 |
| EagI | CGGCCG | 2 cut(s) | 262, 335 |
| EciI | GGCGGA | 2 cut(s) | 352, 527 |
| EclXI | CGGCCG | 2 cut(s) | 262, 335 |
| Eco24I | GRGCYC | 1 cut(s) | 244 |
| Eco52I | CGGCCG | 2 cut(s) | 262, 335 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 632 |
| EcoT38I | GRGCYC | 1 cut(s) | 244 |
| EgeI | GGCGCC | 1 cut(s) | 249 |
| EheI | GGCGCC | 1 cut(s) | 249 |
| FaeI | CATG | 1 cut(s) | 600 |
| FaiI | YATR | 2 cut(s) | 144, 598 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 205, 237 |
| FatI | CATG | 1 cut(s) | 596 |
| FblI | GTMKAC | 1 cut(s) | 498 |
| Fnu4HI | GCNGC | 7 cut(s) | 128, 262, 265, 456, 541, 544, 620 |
| FokI | GGATG | 4 cut(s) | 339, 471, 521, 650 |
| FriOI | GRGCYC | 1 cut(s) | 244 |
| Fsp4HI | GCNGC | 7 cut(s) | 128, 262, 265, 456, 541, 544, 620 |
| FspBI | CTAG | 1 cut(s) | 623 |
| GlaI | GCGC | 1 cut(s) | 249 |
| GluI | GCNGC | 7 cut(s) | 128, 262, 265, 456, 541, 544, 620 |
| GsaI | CCCAGC | 1 cut(s) | 139 |
| HaeII | RGCGCY | 1 cut(s) | 251 |
| HaeIII | GGCC | 6 cut(s) | 47, 264, 337, 414, 434, 568 |
| HapII | CCGG | 7 cut(s) | 227, 238, 245, 258, 279, 321, 338 |
| HhaI | GCGC | 1 cut(s) | 250 |
| Hin1I | GRCGYC | 1 cut(s) | 248 |
| Hin1II | CATG | 1 cut(s) | 600 |
| Hin6I | GCGC | 1 cut(s) | 248 |
| HinP1I | GCGC | 1 cut(s) | 248 |
| HinfI | GANTC | 6 cut(s) | 282, 303, 408, 428, 586, 651 |
| HpaII | CCGG | 7 cut(s) | 227, 238, 245, 258, 279, 321, 338 |
| HphI | GGTGA | 4 cut(s) | 133, 247, 303, 482 |
| Hpy166II | GTNNAC | 1 cut(s) | 499 |
| Hpy188I | TCNGA | 8 cut(s) | 273, 287, 302, 308, 332, 585, 591, 659 |
| Hpy188III | TCNNGA | 4 cut(s) | 65, 190, 578, 673 |
| Hpy8I | GTNNAC | 1 cut(s) | 499 |
| Hpy99I | CGWCG | 9 cut(s) | 302, 336, 371, 474, 507, 616, 683, 686, 689 |
| HpyAV | CCTTC | 7 cut(s) | 37, 66, 207, 410, 430, 450, 541 |
| HpyCH4III | ACNGT | 2 cut(s) | 503, 679 |
| HpyCH4IV | ACGT | 1 cut(s) | 166 |
| HpyCH4V | TGCA | 3 cut(s) | 14, 127, 455 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 136, 239 |
| HpySE526I | ACGT | 1 cut(s) | 166 |
| Hsp92I | GRCGYC | 1 cut(s) | 248 |
| Hsp92II | CATG | 1 cut(s) | 600 |
| HspAI | GCGC | 1 cut(s) | 248 |
| KasI | GGCGCC | 1 cut(s) | 247 |
| Kzo9I | GATC | 7 cut(s) | 49, 273, 308, 511, 580, 591, 669 |
| LmnI | GCTCC | 2 cut(s) | 247, 646 |
| Lsp1109I | GCAGC | 3 cut(s) | 139, 467, 606 |
| LweI | GCATC | 2 cut(s) | 114, 682 |
| MaeI | CTAG | 1 cut(s) | 623 |
| MaeII | ACGT | 1 cut(s) | 166 |
| MaeIII | GTNAC | 3 cut(s) | 253, 316, 383 |
| MalI | GATC | 7 cut(s) | 51, 275, 310, 513, 582, 593, 671 |
| MbiI | CCGCTC | 1 cut(s) | 546 |
| MboI | GATC | 7 cut(s) | 49, 273, 308, 511, 580, 591, 669 |
| MflI | RGATCY | 1 cut(s) | 591 |
| MhlI | GDGCHC | 1 cut(s) | 244 |
| MluCI | AATT | 3 cut(s) | 68, 324, 343 |
| Mly113I | GGCGCC | 1 cut(s) | 248 |
| MlyI | GAGTC | 2 cut(s) | 276, 645 |
| MmeI | TCCRAC | 2 cut(s) | 280, 355 |
| MspI | CCGG | 7 cut(s) | 227, 238, 245, 258, 279, 321, 338 |
| MspR9I | CCNGG | 1 cut(s) | 239 |
| Mva1269I | GAATGC | 1 cut(s) | 267 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 136, 239 |
| NarI | GGCGCC | 1 cut(s) | 248 |
| NciI | CCSGG | 1 cut(s) | 239 |
| NdeII | GATC | 7 cut(s) | 49, 273, 308, 511, 580, 591, 669 |
| NlaIII | CATG | 1 cut(s) | 600 |
| NlaIV | GGNNCC | 3 cut(s) | 243, 249, 593 |
| NmuCI | GTSAC | 3 cut(s) | 253, 316, 383 |
| NotI | GCGGCCGC | 1 cut(s) | 262 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 511, 687 |
| PctI | GAATGC | 1 cut(s) | 267 |
| PfeI | GAWTC | 4 cut(s) | 303, 408, 428, 586 |
| PkrI | GCNGC | 7 cut(s) | 129, 263, 266, 457, 542, 545, 621 |
| Ple19I | CGATCG | 1 cut(s) | 276 |
| PleI | GAGTC | 2 cut(s) | 276, 645 |
| PluTI | GGCGCC | 1 cut(s) | 251 |
| PpsI | GAGTC | 2 cut(s) | 276, 645 |
| PshAI | GACNNNNGTC | 1 cut(s) | 680 |
| PspFI | CCCAGC | 1 cut(s) | 135 |
| PspN4I | GGNNCC | 3 cut(s) | 243, 249, 593 |
| PstI | CTGCAG | 1 cut(s) | 457 |
| PsuI | RGATCY | 1 cut(s) | 591 |
| PvuI | CGATCG | 1 cut(s) | 276 |
| RsaI | GTAC | 1 cut(s) | 162 |
| RsaNI | GTAC | 1 cut(s) | 161 |
| SatI | GCNGC | 7 cut(s) | 128, 262, 265, 456, 541, 544, 620 |
| Sau3AI | GATC | 7 cut(s) | 49, 273, 308, 511, 580, 591, 669 |
| SchI | GAGTC | 2 cut(s) | 276, 645 |
| ScrFI | CCNGG | 1 cut(s) | 239 |
| SduI | GDGCHC | 1 cut(s) | 244 |
| SetI | ASST | 8 cut(s) | 76, 123, 169, 402, 422, 442, 630, 664 |
| SfaNI | GCATC | 2 cut(s) | 114, 682 |
| SfcI | CTRYAG | 1 cut(s) | 453 |
| SfoI | GGCGCC | 1 cut(s) | 249 |
| SgrAI | CRCCGGYG | 1 cut(s) | 257 |
| Sse9I | AATT | 3 cut(s) | 68, 324, 343 |
| SsiI | CCGC | 8 cut(s) | 261, 265, 356, 363, 466, 538, 541, 544 |
| SspDI | GGCGCC | 1 cut(s) | 247 |
| SspMI | CTAG | 1 cut(s) | 623 |
| StyD4I | CCNGG | 1 cut(s) | 237 |
| TaaI | ACNGT | 2 cut(s) | 503, 679 |
| TaiI | ACGT | 1 cut(s) | 169 |
| TaqI | TCGA | 4 cut(s) | 369, 505, 668, 674 |
| TaqII | GACCGA | 1 cut(s) | 619 |
| TasI | AATT | 3 cut(s) | 68, 324, 343 |
| TatI | WGTACW | 1 cut(s) | 160 |
| TauI | GCSGC | 4 cut(s) | 264, 267, 543, 546 |
| TfiI | GAWTC | 4 cut(s) | 303, 408, 428, 586 |
| TscAI | CASTG | 1 cut(s) | 321 |
| TseFI | GTSAC | 3 cut(s) | 253, 316, 383 |
| TseI | GCWGC | 3 cut(s) | 127, 455, 619 |
| Tsp45I | GTSAC | 3 cut(s) | 253, 316, 383 |
| TspDTI | ATGAA | 1 cut(s) | 523 |
| TspRI | CASTG | 1 cut(s) | 321 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 632 |
| XapI | RAATTY | 1 cut(s) | 324 |
| XmiI | GTMKAC | 1 cut(s) | 498 |
| XspI | CTAG | 1 cut(s) | 623 |