TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_14 | PF23598 | 46 - 151 | 6.6e-15 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 75 - 160 | 2.7e-08 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 146 - 232 | 2.5e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 159 - 224 | 7.4e-08 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 201 - 298 | 4.3e-14 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 217 - 303 | 2.6e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 288 - 374 | 1.7e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 295 - 368 | 7.5e-10 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 356 - 418 | 4.5e-08 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 445 - 519 | 9.2e-07 | Leucine-rich repeat region |
| C-JID | PF20160 | 592 - 734 | 2.1e-19 | C-JID domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1515 |
| AccB1I | GGYRCC | 1 cut(s) | 326 |
| AccBSI | CCGCTC | 2 cut(s) | 1912, 2008 |
| AccI | GTMKAC | 3 cut(s) | 79, 1477, 1581 |
| AccII | CGCG | 2 cut(s) | 1972, 2053 |
| AciI | CCGC | 3 cut(s) | 1910, 2008, 2080 |
| AclWI | GGATC | 3 cut(s) | 411, 1386, 2034 |
| AcoI | YGGCCR | 3 cut(s) | 1495, 1614, 1750 |
| AcsI | RAATTY | 4 cut(s) | 1232, 1760, 1788, 2147 |
| AcuI | CTGAAG | 1 cut(s) | 1422 |
| AcvI | CACGTG | 1 cut(s) | 319 |
| AfaI | GTAC | 3 cut(s) | 216, 1802, 2059 |
| AjnI | CCWGG | 2 cut(s) | 1777, 1880 |
| Alw26I | GTCTC | 1 cut(s) | 197 |
| AlwI | GGATC | 3 cut(s) | 411, 1386, 2034 |
| Ama87I | CYCGRG | 1 cut(s) | 1484 |
| AoxI | GGCC | 4 cut(s) | 1495, 1614, 1750, 2304 |
| ApeKI | GCWGC | 2 cut(s) | 4, 1840 |
| ApoI | RAATTY | 4 cut(s) | 1232, 1760, 1788, 2147 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1300, 1332 |
| AseI | ATTAAT | 1 cut(s) | 1442 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 372 |
| AspLEI | GCGC | 1 cut(s) | 2053 |
| AspS9I | GGNCC | 2 cut(s) | 2173, 2305 |
| AsuC2I | CCSGG | 1 cut(s) | 1916 |
| AsuHPI | GGTGA | 1 cut(s) | 1254 |
| AvaI | CYCGRG | 1 cut(s) | 1484 |
| AvaII | GGWCC | 1 cut(s) | 2173 |
| BalI | TGGCCA | 2 cut(s) | 1616, 1752 |
| BanI | GGYRCC | 1 cut(s) | 326 |
| BauI | CACGAG | 1 cut(s) | 407 |
| BbrPI | CACGTG | 1 cut(s) | 319 |
| BbsI | GAAGAC | 6 cut(s) | 407, 620, 1046, 1428, 1511, 1815 |
| BbvI | GCAGC | 2 cut(s) | 16, 1827 |
| BccI | CCATC | 2 cut(s) | 35, 2316 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 388, 422, 1317, 1351, 1934, 1968 |
| BciT130I | CCWGG | 2 cut(s) | 1779, 1882 |
| BcnI | CCSGG | 1 cut(s) | 1916 |
| BcoDI | GTCTC | 1 cut(s) | 197 |
| BfaI | CTAG | 4 cut(s) | 1004, 1506, 2067, 2289 |
| BglII | AGATCT | 3 cut(s) | 877, 1090, 1453 |
| BisI | GCNGC | 2 cut(s) | 5, 1841 |
| BlsI | GCNGC | 2 cut(s) | 6, 1842 |
| Bme1390I | CCNGG | 3 cut(s) | 1779, 1882, 1916 |
| Bme18I | GGWCC | 1 cut(s) | 2173 |
| BmeT110I | CYCGRG | 1 cut(s) | 1484 |
| BmgT120I | GGNCC | 2 cut(s) | 2173, 2305 |
| BmiI | GGNNCC | 2 cut(s) | 328, 2174 |
| BmrFI | CCNGG | 3 cut(s) | 1779, 1882, 1916 |
| BmsI | GCATC | 5 cut(s) | 1418, 1500, 1852, 2185, 2294 |
| BoxI | GACNNNNGTC | 1 cut(s) | 288 |
| BpiI | GAAGAC | 6 cut(s) | 407, 620, 1046, 1428, 1511, 1815 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 28, 60 |
| BpmI | CTGGAG | 1 cut(s) | 326 |
| BpuEI | CTTGAG | 7 cut(s) | 74, 431, 599, 622, 641, 653, 1067 |
| BpuMI | CCSGG | 1 cut(s) | 1916 |
| BsaAI | YACGTR | 2 cut(s) | 218, 319 |
| BsaBI | GATNNNNATC | 3 cut(s) | 882, 1095, 1452 |
| Bse118I | RCCGGY | 1 cut(s) | 329 |
| Bse1I | ACTGG | 1 cut(s) | 1680 |
| Bse3DI | GCAATG | 3 cut(s) | 1416, 1712, 2261 |
| Bse8I | GATNNNNATC | 3 cut(s) | 882, 1095, 1452 |
| BseBI | CCWGG | 2 cut(s) | 1779, 1882 |
| BseGI | GGATG | 6 cut(s) | 712, 925, 1138, 1433, 1843, 2308 |
| BseJI | GATNNNNATC | 3 cut(s) | 882, 1095, 1452 |
| BseMI | GCAATG | 3 cut(s) | 1416, 1712, 2261 |
| BseMII | CTCAG | 3 cut(s) | 26, 1471, 1940 |
| BseNI | ACTGG | 1 cut(s) | 1680 |
| BseRI | GAGGAG | 6 cut(s) | 509, 766, 979, 1192, 1892, 2216 |
| BseXI | GCAGC | 2 cut(s) | 16, 1827 |
| BseYI | CCCAGC | 1 cut(s) | 1919 |
| Bsh1236I | CGCG | 2 cut(s) | 1972, 2053 |
| BshFI | GGCC | 4 cut(s) | 1497, 1616, 1752, 2306 |
| BshNI | GGYRCC | 1 cut(s) | 326 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1484 |
| BsiSI | CCGG | 6 cut(s) | 330, 704, 917, 1130, 1325, 1916 |
| BslFI | GGGAC | 1 cut(s) | 597 |
| BsmAI | GTCTC | 1 cut(s) | 197 |
| BsmFI | GGGAC | 1 cut(s) | 597 |
| BsmI | GAATGC | 3 cut(s) | 366, 1320, 1360 |
| BsnI | GGCC | 4 cut(s) | 1497, 1616, 1752, 2306 |
| BsoBI | CYCGRG | 1 cut(s) | 1484 |
| Bsp143I | GATC | 7 cut(s) | 403, 877, 1090, 1378, 1453, 1999, 2026 |
| BspACI | CCGC | 3 cut(s) | 1910, 2008, 2080 |
| BspANI | GGCC | 4 cut(s) | 1497, 1616, 1752, 2306 |
| BspCNI | CTCAG | 3 cut(s) | 27, 1470, 1941 |
| BspFNI | CGCG | 2 cut(s) | 1972, 2053 |
| BspLI | GGNNCC | 2 cut(s) | 328, 2174 |
| BspPI | GGATC | 3 cut(s) | 411, 1386, 2034 |
| BspT107I | GGYRCC | 1 cut(s) | 326 |
| BsrBI | CCGCTC | 2 cut(s) | 1912, 2008 |
| BsrDI | GCAATG | 3 cut(s) | 1416, 1712, 2261 |
| BsrFI | RCCGGY | 1 cut(s) | 329 |
| BsrI | ACTGG | 1 cut(s) | 1680 |
| BssAI | RCCGGY | 1 cut(s) | 329 |
| BssMI | GATC | 7 cut(s) | 403, 877, 1090, 1378, 1453, 1999, 2026 |
| BssNAI | GTATAC | 1 cut(s) | 80 |
| BssSI | CACGAG | 1 cut(s) | 407 |
| Bst1107I | GTATAC | 1 cut(s) | 80 |
| Bst2BI | CACGAG | 1 cut(s) | 407 |
| Bst2UI | CCWGG | 2 cut(s) | 1779, 1882 |
| Bst4CI | ACNGT | 7 cut(s) | 166, 1260, 1517, 1667, 1834, 1979, 2105 |
| BstBAI | YACGTR | 2 cut(s) | 218, 319 |
| BstC8I | GCNNGC | 3 cut(s) | 208, 788, 1001 |
| BstDEI | CTNAG | 4 cut(s) | 35, 1382, 1457, 1949 |
| BstEII | GGTNACC | 1 cut(s) | 1260 |
| BstF5I | GGATG | 6 cut(s) | 712, 925, 1138, 1433, 1843, 2308 |
| BstFNI | CGCG | 2 cut(s) | 1972, 2053 |
| BstHHI | GCGC | 1 cut(s) | 2053 |
| BstKTI | GATC | 7 cut(s) | 406, 880, 1093, 1381, 1456, 2002, 2029 |
| BstMAI | GTCTC | 1 cut(s) | 197 |
| BstMBI | GATC | 7 cut(s) | 403, 877, 1090, 1378, 1453, 1999, 2026 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 2238, 2303 |
| BstNI | CCWGG | 2 cut(s) | 1779, 1882 |
| BstNSI | RCATGY | 3 cut(s) | 790, 1003, 2133 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 288 |
| BstPI | GGTNACC | 1 cut(s) | 1260 |
| BstSCI | CCNGG | 3 cut(s) | 1777, 1880, 1914 |
| BstUI | CGCG | 2 cut(s) | 1972, 2053 |
| BstV1I | GCAGC | 2 cut(s) | 16, 1827 |
| BstV2I | GAAGAC | 6 cut(s) | 407, 620, 1046, 1428, 1511, 1815 |
| BstX2I | RGATCY | 5 cut(s) | 403, 877, 1090, 1378, 1453 |
| BstYI | RGATCY | 5 cut(s) | 403, 877, 1090, 1378, 1453 |
| BstZ17I | GTATAC | 1 cut(s) | 80 |
| BsuRI | GGCC | 4 cut(s) | 1497, 1616, 1752, 2306 |
| BtsCI | GGATG | 6 cut(s) | 712, 925, 1138, 1433, 1843, 2308 |
| BtsI | GCAGTG | 4 cut(s) | 217, 643, 856, 1069 |
| BtsIMutI | CAGTG | 5 cut(s) | 217, 643, 856, 1069, 1513 |
| Cac8I | GCNNGC | 3 cut(s) | 208, 788, 1001 |
| CfoI | GCGC | 1 cut(s) | 2053 |
| Cfr10I | RCCGGY | 1 cut(s) | 329 |
| Cfr13I | GGNCC | 2 cut(s) | 2173, 2305 |
| CseI | GACGC | 2 cut(s) | 1592, 1961 |
| Csp6I | GTAC | 3 cut(s) | 215, 1801, 2058 |
| CviQI | GTAC | 3 cut(s) | 215, 1801, 2058 |
| DdeI | CTNAG | 4 cut(s) | 35, 1382, 1457, 1949 |
| DpnI | GATC | 7 cut(s) | 405, 879, 1092, 1380, 1455, 2001, 2028 |
| DpnII | GATC | 7 cut(s) | 403, 877, 1090, 1378, 1453, 1999, 2026 |
| DraI | TTTAAA | 2 cut(s) | 73, 2125 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1515 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1515 |
| EaeI | YGGCCR | 3 cut(s) | 1495, 1614, 1750 |
| Eco32I | GATATC | 1 cut(s) | 2098 |
| Eco47I | GGWCC | 1 cut(s) | 2173 |
| Eco57I | CTGAAG | 1 cut(s) | 1422 |
| Eco72I | CACGTG | 1 cut(s) | 319 |
| Eco88I | CYCGRG | 1 cut(s) | 1484 |
| Eco91I | GGTNACC | 1 cut(s) | 1260 |
| EcoO65I | GGTNACC | 1 cut(s) | 1260 |
| EcoRII | CCWGG | 2 cut(s) | 1777, 1880 |
| EcoRV | GATATC | 1 cut(s) | 2098 |
| EcoT22I | ATGCAT | 1 cut(s) | 201 |
| FaqI | GGGAC | 1 cut(s) | 597 |
| FauI | CCCGC | 1 cut(s) | 2001 |
| FblI | GTMKAC | 3 cut(s) | 79, 1477, 1581 |
| Fnu4HI | GCNGC | 2 cut(s) | 5, 1841 |
| FokI | GGATG | 6 cut(s) | 719, 932, 1145, 1440, 1830, 2295 |
| Fsp4HI | GCNGC | 2 cut(s) | 5, 1841 |
| FspBI | CTAG | 4 cut(s) | 1004, 1506, 2067, 2289 |
| GlaI | GCGC | 1 cut(s) | 2052 |
| GluI | GCNGC | 2 cut(s) | 5, 1841 |
| GsaI | CCCAGC | 1 cut(s) | 1923 |
| GsuI | CTGGAG | 1 cut(s) | 326 |
| HaeIII | GGCC | 4 cut(s) | 1497, 1616, 1752, 2306 |
| HapII | CCGG | 6 cut(s) | 330, 704, 917, 1130, 1325, 1916 |
| HgaI | GACGC | 2 cut(s) | 1592, 1961 |
| HhaI | GCGC | 1 cut(s) | 2053 |
| Hin6I | GCGC | 1 cut(s) | 2051 |
| HinP1I | GCGC | 1 cut(s) | 2051 |
| HincII | GTYRAC | 3 cut(s) | 133, 816, 2015 |
| HindII | GTYRAC | 3 cut(s) | 133, 816, 2015 |
| HindIII | AAGCTT | 9 cut(s) | 263, 311, 671, 689, 902, 950, 1115, 1163, 1541 |
| HpaII | CCGG | 6 cut(s) | 330, 704, 917, 1130, 1325, 1916 |
| HphI | GGTGA | 1 cut(s) | 1254 |
| Hpy166II | GTNNAC | 8 cut(s) | 80, 133, 215, 816, 1478, 1582, 2015, 2064 |
| Hpy188I | TCNGA | 6 cut(s) | 36, 48, 243, 1402, 1548, 2212 |
| Hpy188III | TCNNGA | 9 cut(s) | 104, 305, 620, 740, 1046, 1506, 1793, 2003, 2140 |
| Hpy8I | GTNNAC | 8 cut(s) | 80, 133, 215, 816, 1478, 1582, 2015, 2064 |
| HpyAV | CCTTC | 6 cut(s) | 101, 357, 788, 1001, 2137, 2270 |
| HpyCH4III | ACNGT | 7 cut(s) | 166, 1260, 1517, 1667, 1834, 1979, 2105 |
| HpyCH4IV | ACGT | 4 cut(s) | 217, 318, 1610, 2060 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 2238, 2303 |
| HpyF3I | CTNAG | 4 cut(s) | 35, 1382, 1457, 1949 |
| HpySE526I | ACGT | 4 cut(s) | 217, 318, 1610, 2060 |
| HspAI | GCGC | 1 cut(s) | 2051 |
| Kzo9I | GATC | 7 cut(s) | 403, 877, 1090, 1378, 1453, 1999, 2026 |
| LmnI | GCTCC | 3 cut(s) | 1917, 2005, 2203 |
| Lsp1109I | GCAGC | 2 cut(s) | 16, 1827 |
| LweI | GCATC | 5 cut(s) | 1418, 1500, 1852, 2185, 2294 |
| MaeI | CTAG | 4 cut(s) | 1004, 1506, 2067, 2289 |
| MaeII | ACGT | 4 cut(s) | 217, 318, 1610, 2060 |
| MaeIII | GTNAC | 5 cut(s) | 38, 1260, 1385, 1859, 1973 |
| MalI | GATC | 7 cut(s) | 405, 879, 1092, 1380, 1455, 2001, 2028 |
| MbiI | CCGCTC | 2 cut(s) | 1912, 2008 |
| MboI | GATC | 7 cut(s) | 403, 877, 1090, 1378, 1453, 1999, 2026 |
| MfeI | CAATTG | 1 cut(s) | 354 |
| MflI | RGATCY | 5 cut(s) | 403, 877, 1090, 1378, 1453 |
| MlsI | TGGCCA | 2 cut(s) | 1616, 1752 |
| MluNI | TGGCCA | 2 cut(s) | 1616, 1752 |
| MlyI | GAGTC | 6 cut(s) | 199, 310, 724, 1693, 1744, 1893 |
| MmeI | TCCRAC | 2 cut(s) | 2004, 2190 |
| Mox20I | TGGCCA | 2 cut(s) | 1616, 1752 |
| Mph1103I | ATGCAT | 1 cut(s) | 201 |
| MroXI | GAANNNNTTC | 1 cut(s) | 372 |
| MscI | TGGCCA | 2 cut(s) | 1616, 1752 |
| MslI | CAYNNNNRTG | 2 cut(s) | 321, 1812 |
| Msp20I | TGGCCA | 2 cut(s) | 1616, 1752 |
| MspI | CCGG | 6 cut(s) | 330, 704, 917, 1130, 1325, 1916 |
| MspR9I | CCNGG | 3 cut(s) | 1779, 1882, 1916 |
| MunI | CAATTG | 1 cut(s) | 354 |
| Mva1269I | GAATGC | 3 cut(s) | 366, 1320, 1360 |
| MvaI | CCWGG | 2 cut(s) | 1779, 1882 |
| MvnI | CGCG | 2 cut(s) | 1972, 2053 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 2238, 2303 |
| NciI | CCSGG | 1 cut(s) | 1916 |
| NdeII | GATC | 7 cut(s) | 403, 877, 1090, 1378, 1453, 1999, 2026 |
| NlaIV | GGNNCC | 2 cut(s) | 328, 2174 |
| NmuCI | GTSAC | 3 cut(s) | 1260, 1385, 1973 |
| NsiI | ATGCAT | 1 cut(s) | 201 |
| NspI | RCATGY | 3 cut(s) | 790, 1003, 2133 |
| PaeI | GCATGC | 2 cut(s) | 790, 1003 |
| PctI | GAATGC | 3 cut(s) | 366, 1320, 1360 |
| PdmI | GAANNNNTTC | 1 cut(s) | 372 |
| PfeI | GAWTC | 6 cut(s) | 49, 244, 736, 829, 1875, 2136 |
| PfoI | TCCNGGA | 1 cut(s) | 1777 |
| PkrI | GCNGC | 2 cut(s) | 6, 1842 |
| PleI | GAGTC | 6 cut(s) | 198, 309, 723, 1692, 1743, 1893 |
| PmaCI | CACGTG | 1 cut(s) | 319 |
| PmlI | CACGTG | 1 cut(s) | 319 |
| PpsI | GAGTC | 6 cut(s) | 198, 309, 723, 1692, 1743, 1893 |
| Ppu21I | YACGTR | 2 cut(s) | 218, 319 |
| PshAI | GACNNNNGTC | 1 cut(s) | 288 |
| PshBI | ATTAAT | 1 cut(s) | 1442 |
| Psp6I | CCWGG | 2 cut(s) | 1777, 1880 |
| PspCI | CACGTG | 1 cut(s) | 319 |
| PspEI | GGTNACC | 1 cut(s) | 1260 |
| PspFI | CCCAGC | 1 cut(s) | 1919 |
| PspGI | CCWGG | 2 cut(s) | 1777, 1880 |
| PspN4I | GGNNCC | 2 cut(s) | 328, 2174 |
| PspPI | GGNCC | 2 cut(s) | 2173, 2305 |
| PsuI | RGATCY | 5 cut(s) | 403, 877, 1090, 1378, 1453 |
| RsaI | GTAC | 3 cut(s) | 216, 1802, 2059 |
| RsaNI | GTAC | 3 cut(s) | 215, 1801, 2058 |
| RseI | CAYNNNNRTG | 2 cut(s) | 321, 1812 |
| SatI | GCNGC | 2 cut(s) | 5, 1841 |
| Sau3AI | GATC | 7 cut(s) | 403, 877, 1090, 1378, 1453, 1999, 2026 |
| Sau96I | GGNCC | 2 cut(s) | 2173, 2305 |
| SchI | GAGTC | 6 cut(s) | 199, 310, 724, 1693, 1744, 1893 |
| ScrFI | CCNGG | 3 cut(s) | 1779, 1882, 1916 |
| SfaNI | GCATC | 5 cut(s) | 1418, 1500, 1852, 2185, 2294 |
| SinI | GGWCC | 1 cut(s) | 2173 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 321, 1812 |
| SmlI | CTYRAG | 7 cut(s) | 89, 446, 578, 601, 620, 668, 1046 |
| SmoI | CTYRAG | 7 cut(s) | 89, 446, 578, 601, 620, 668, 1046 |
| SphI | GCATGC | 2 cut(s) | 790, 1003 |
| SsiI | CCGC | 3 cut(s) | 1910, 2008, 2080 |
| SspI | AATATT | 1 cut(s) | 2236 |
| SspMI | CTAG | 4 cut(s) | 1004, 1506, 2067, 2289 |
| StyD4I | CCNGG | 3 cut(s) | 1777, 1880, 1914 |
| TaaI | ACNGT | 7 cut(s) | 166, 1260, 1517, 1667, 1834, 1979, 2105 |
| TaiI | ACGT | 4 cut(s) | 220, 321, 1613, 2063 |
| TaqI | TCGA | 3 cut(s) | 144, 1810, 1826 |
| TfiI | GAWTC | 6 cut(s) | 49, 244, 736, 829, 1875, 2136 |
| TscAI | CASTG | 5 cut(s) | 217, 643, 856, 1069, 1520 |
| TseFI | GTSAC | 3 cut(s) | 1260, 1385, 1973 |
| TseI | GCWGC | 2 cut(s) | 4, 1840 |
| Tsp45I | GTSAC | 3 cut(s) | 1260, 1385, 1973 |
| TspGWI | ACGGA | 1 cut(s) | 2165 |
| TspRI | CASTG | 5 cut(s) | 217, 643, 856, 1069, 1520 |
| VpaK11BI | GGWCC | 1 cut(s) | 2173 |
| VspI | ATTAAT | 1 cut(s) | 1442 |
| XapI | RAATTY | 4 cut(s) | 1232, 1760, 1788, 2147 |
| XbaI | TCTAGA | 1 cut(s) | 1505 |
| XceI | RCATGY | 3 cut(s) | 790, 1003, 2133 |
| XmiI | GTMKAC | 3 cut(s) | 79, 1477, 1581 |
| XmnI | GAANNNNTTC | 1 cut(s) | 372 |
| XspI | CTAG | 4 cut(s) | 1004, 1506, 2067, 2289 |
| Zsp2I | ATGCAT | 1 cut(s) | 201 |