TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 22 - 205 | 1.9e-54 | TIR domain |
| TIR_2 | PF13676 | 25 - 123 | 1.4e-16 | TIR domain |
| NB-ARC | PF00931 | 219 - 374 | 4e-21 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 443 - 513 | 1.6e-10 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 674 - 989 | 2.7e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 704 - 917 | 4.2e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_8 | PF13855 | 835 - 892 | 6.3e-06 | Leucine rich repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 513 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1481 |
| Acc16I | TGCGCA | 1 cut(s) | 2715 |
| Acc65I | GGTACC | 1 cut(s) | 2303 |
| AccB1I | GGYRCC | 1 cut(s) | 2303 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2165 |
| AccBSI | CCGCTC | 1 cut(s) | 2885 |
| AccII | CGCG | 1 cut(s) | 132 |
| AciI | CCGC | 9 cut(s) | 103, 130, 1066, 2033, 2211, 2307, 2768, 2883, 2978 |
| AclWI | GGATC | 6 cut(s) | 356, 369, 1926, 2601, 2706, 2961 |
| AcoI | YGGCCR | 3 cut(s) | 480, 1826, 2880 |
| AcuI | CTGAAG | 2 cut(s) | 1868, 2342 |
| AdeI | CACNNNGTG | 1 cut(s) | 282 |
| AfaI | GTAC | 4 cut(s) | 143, 1246, 2305, 2892 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 445, 720, 1133, 1879, 2165 |
| AflII | CTTAAG | 1 cut(s) | 2363 |
| AflIII | ACRYGT | 1 cut(s) | 550 |
| AhlI | ACTAGT | 2 cut(s) | 796, 2258 |
| AjnI | CCWGG | 2 cut(s) | 1549, 2203 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1232, 1264, 2232, 2264 |
| AleI | CACNNNNGTG | 1 cut(s) | 1539 |
| Alw21I | GWGCWC | 3 cut(s) | 14, 213, 1095 |
| Alw26I | GTCTC | 4 cut(s) | 121, 1028, 1940, 2291 |
| AlwI | GGATC | 6 cut(s) | 356, 369, 1926, 2601, 2706, 2961 |
| Ama87I | CYCGRG | 1 cut(s) | 2117 |
| AoxI | GGCC | 6 cut(s) | 21, 480, 1747, 1826, 2251, 2880 |
| ApeKI | GCWGC | 1 cut(s) | 1560 |
| AseI | ATTAAT | 1 cut(s) | 2661 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2860 |
| Asp718I | GGTACC | 1 cut(s) | 2303 |
| AspLEI | GCGC | 1 cut(s) | 2716 |
| AspS9I | GGNCC | 7 cut(s) | 21, 791, 1748, 2017, 2208, 2453, 2655 |
| AsuC2I | CCSGG | 2 cut(s) | 2301, 3016 |
| AsuHPI | GGTGA | 5 cut(s) | 104, 249, 995, 1021, 2773 |
| AsuII | TTCGAA | 1 cut(s) | 1113 |
| AvaI | CYCGRG | 1 cut(s) | 2117 |
| AvaII | GGWCC | 5 cut(s) | 791, 2017, 2208, 2453, 2655 |
| AxyI | CCTNAGG | 1 cut(s) | 654 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 125, 158 |
| BalI | TGGCCA | 1 cut(s) | 482 |
| BamHI | GGATCC | 1 cut(s) | 361 |
| BanI | GGYRCC | 1 cut(s) | 2303 |
| BanII | GRGCYC | 3 cut(s) | 213, 1095, 1182 |
| BauI | CACGAG | 2 cut(s) | 33, 1539 |
| BbsI | GAAGAC | 4 cut(s) | 102, 1547, 1894, 2612 |
| Bbv12I | GWGCWC | 3 cut(s) | 14, 213, 1095 |
| BbvI | GCAGC | 1 cut(s) | 1572 |
| BceAI | ACGGC | 2 cut(s) | 924, 1548 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 94, 128 |
| BciT130I | CCWGG | 2 cut(s) | 1551, 2205 |
| BciVI | GTATCC | 1 cut(s) | 1806 |
| BcnI | CCSGG | 2 cut(s) | 2301, 3016 |
| BcoDI | GTCTC | 4 cut(s) | 121, 1028, 1940, 2291 |
| BcuI | ACTAGT | 2 cut(s) | 796, 2258 |
| BfmI | CTRYAG | 1 cut(s) | 137 |
| BfrI | CTTAAG | 1 cut(s) | 2363 |
| BfuI | GTATCC | 1 cut(s) | 1806 |
| BisI | GCNGC | 2 cut(s) | 1561, 2883 |
| BlpI | GCTNAGC | 1 cut(s) | 411 |
| BlsI | GCNGC | 2 cut(s) | 1562, 2884 |
| Bme1390I | CCNGG | 4 cut(s) | 1551, 2205, 2301, 3016 |
| Bme18I | GGWCC | 5 cut(s) | 791, 2017, 2208, 2453, 2655 |
| BmeT110I | CYCGRG | 1 cut(s) | 2117 |
| BmgT120I | GGNCC | 7 cut(s) | 21, 791, 1748, 2017, 2208, 2453, 2655 |
| BmiI | GGNNCC | 8 cut(s) | 363, 874, 1181, 1548, 1750, 2209, 2305, 2454 |
| BmrFI | CCNGG | 4 cut(s) | 1551, 2205, 2301, 3016 |
| BmrI | ACTGGG | 2 cut(s) | 52, 821 |
| BmsI | GCATC | 7 cut(s) | 1300, 1479, 1609, 1689, 1842, 2342, 2627 |
| BmuI | ACTGGG | 2 cut(s) | 52, 821 |
| BpiI | GAAGAC | 4 cut(s) | 102, 1547, 1894, 2612 |
| BpmI | CTGGAG | 2 cut(s) | 189, 2324 |
| Bpu10I | CCTNAGC | 2 cut(s) | 2870, 2886 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 411 |
| Bpu14I | TTCGAA | 1 cut(s) | 1113 |
| BpuEI | CTTGAG | 5 cut(s) | 100, 235, 1109, 1792, 1997 |
| BpuMI | CCSGG | 2 cut(s) | 2301, 3016 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2529 |
| BsaI | GGTCTC | 1 cut(s) | 1940 |
| BsaJI | CCNNGG | 2 cut(s) | 315, 2204 |
| BsaWI | WCCGGW | 2 cut(s) | 323, 2695 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 8, 38, 2685, 2715 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 445, 720, 1133, 1879, 2165 |
| Bse118I | RCCGGY | 2 cut(s) | 144, 343 |
| Bse1I | ACTGG | 2 cut(s) | 58, 827 |
| Bse21I | CCTNAGG | 1 cut(s) | 654 |
| Bse3DI | GCAATG | 2 cut(s) | 1347, 2028 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2529 |
| BseBI | CCWGG | 2 cut(s) | 1551, 2205 |
| BseDI | CCNNGG | 2 cut(s) | 315, 2204 |
| BseJI | GATNNNNATC | 1 cut(s) | 2529 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 445, 720, 1133, 1879, 2165 |
| BseMI | GCAATG | 2 cut(s) | 1347, 2028 |
| BseMII | CTCAG | 6 cut(s) | 645, 753, 2208, 2282, 2775, 2900 |
| BseNI | ACTGG | 2 cut(s) | 58, 827 |
| BseRI | GAGGAG | 5 cut(s) | 16, 671, 1016, 1559, 1994 |
| BseXI | GCAGC | 1 cut(s) | 1572 |
| BseYI | CCCAGC | 1 cut(s) | 1060 |
| Bsh1236I | CGCG | 1 cut(s) | 132 |
| Bsh1285I | CGRYCG | 1 cut(s) | 175 |
| BshFI | GGCC | 6 cut(s) | 23, 482, 1749, 1828, 2253, 2882 |
| BshNI | GGYRCC | 1 cut(s) | 2303 |
| BsiEI | CGRYCG | 1 cut(s) | 175 |
| BsiHKAI | GWGCWC | 3 cut(s) | 14, 213, 1095 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2117 |
| BsiSI | CCGG | 8 cut(s) | 145, 324, 344, 1825, 1873, 2300, 2696, 3016 |
| BslFI | GGGAC | 3 cut(s) | 1895, 2221, 2998 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 445, 720, 1133, 1879, 2165 |
| BsmAI | GTCTC | 4 cut(s) | 121, 1028, 1940, 2291 |
| BsmBI | CGTCTC | 2 cut(s) | 121, 1028 |
| BsmFI | GGGAC | 3 cut(s) | 1895, 2221, 2998 |
| BsmI | GAATGC | 3 cut(s) | 1352, 1691, 2716 |
| BsnI | GGCC | 6 cut(s) | 23, 482, 1749, 1828, 2253, 2882 |
| Bso31I | GGTCTC | 1 cut(s) | 1940 |
| BsoBI | CYCGRG | 1 cut(s) | 2117 |
| Bsp119I | TTCGAA | 1 cut(s) | 1113 |
| Bsp1286I | GDGCHC | 4 cut(s) | 14, 213, 1095, 1182 |
| Bsp143I | GATC | 8 cut(s) | 361, 576, 1120, 1468, 1918, 2593, 2698, 2953 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 411 |
| Bsp19I | CCATGG | 1 cut(s) | 315 |
| BspACI | CCGC | 9 cut(s) | 103, 130, 1066, 2033, 2211, 2307, 2768, 2883, 2978 |
| BspANI | GGCC | 6 cut(s) | 23, 482, 1749, 1828, 2253, 2882 |
| BspCNI | CTCAG | 6 cut(s) | 646, 754, 2209, 2283, 2774, 2899 |
| BspFNI | CGCG | 1 cut(s) | 132 |
| BspLI | GGNNCC | 8 cut(s) | 363, 874, 1181, 1548, 1750, 2209, 2305, 2454 |
| BspMAI | CTGCAG | 1 cut(s) | 141 |
| BspPI | GGATC | 6 cut(s) | 356, 369, 1926, 2601, 2706, 2961 |
| BspQI | GCTCTTC | 1 cut(s) | 383 |
| BspT104I | TTCGAA | 1 cut(s) | 1113 |
| BspT107I | GGYRCC | 1 cut(s) | 2303 |
| BspTI | CTTAAG | 1 cut(s) | 2363 |
| BspTNI | GGTCTC | 1 cut(s) | 1940 |
| BsrBI | CCGCTC | 1 cut(s) | 2885 |
| BsrDI | GCAATG | 2 cut(s) | 1347, 2028 |
| BsrFI | RCCGGY | 2 cut(s) | 144, 343 |
| BsrI | ACTGG | 2 cut(s) | 58, 827 |
| BssAI | RCCGGY | 2 cut(s) | 144, 343 |
| BssECI | CCNNGG | 2 cut(s) | 315, 2204 |
| BssMI | GATC | 8 cut(s) | 361, 576, 1120, 1468, 1918, 2593, 2698, 2953 |
| BssSI | CACGAG | 2 cut(s) | 33, 1539 |
| BssT1I | CCWWGG | 1 cut(s) | 315 |
| Bst2BI | CACGAG | 2 cut(s) | 33, 1539 |
| Bst2UI | CCWGG | 2 cut(s) | 1551, 2205 |
| Bst4CI | ACNGT | 5 cut(s) | 1638, 2006, 2055, 2812, 2984 |
| Bst6I | CTCTTC | 3 cut(s) | 383, 1653, 1815 |
| BstAFI | CTTAAG | 1 cut(s) | 2363 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2637 |
| BstBI | TTCGAA | 1 cut(s) | 1113 |
| BstC8I | GCNNGC | 3 cut(s) | 1839, 2573, 2629 |
| BstDSI | CCRYGG | 1 cut(s) | 315 |
| BstFNI | CGCG | 1 cut(s) | 132 |
| BstHHI | GCGC | 1 cut(s) | 2716 |
| BstKTI | GATC | 8 cut(s) | 364, 579, 1123, 1471, 1921, 2596, 2701, 2956 |
| BstMAI | GTCTC | 4 cut(s) | 121, 1028, 1940, 2291 |
| BstMBI | GATC | 8 cut(s) | 361, 576, 1120, 1468, 1918, 2593, 2698, 2953 |
| BstMCI | CGRYCG | 1 cut(s) | 175 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 145, 1834, 2637 |
| BstNI | CCWGG | 2 cut(s) | 1551, 2205 |
| BstSCI | CCNGG | 4 cut(s) | 1549, 2203, 2299, 3014 |
| BstSFI | CTRYAG | 1 cut(s) | 137 |
| BstUI | CGCG | 1 cut(s) | 132 |
| BstV1I | GCAGC | 1 cut(s) | 1572 |
| BstV2I | GAAGAC | 4 cut(s) | 102, 1547, 1894, 2612 |
| BstX2I | RGATCY | 5 cut(s) | 361, 1918, 2593, 2698, 2953 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2348 |
| BstYI | RGATCY | 5 cut(s) | 361, 1918, 2593, 2698, 2953 |
| Bsu36I | CCTNAGG | 1 cut(s) | 654 |
| BsuI | GTATCC | 1 cut(s) | 1806 |
| BsuRI | GGCC | 6 cut(s) | 23, 482, 1749, 1828, 2253, 2882 |
| BtgI | CCRYGG | 1 cut(s) | 315 |
| BtsIMutI | CAGTG | 3 cut(s) | 65, 2214, 2980 |
| Cac8I | GCNNGC | 3 cut(s) | 1839, 2573, 2629 |
| CfoI | GCGC | 1 cut(s) | 2716 |
| Cfr10I | RCCGGY | 2 cut(s) | 144, 343 |
| Cfr13I | GGNCC | 7 cut(s) | 21, 791, 1748, 2017, 2208, 2453, 2655 |
| CseI | GACGC | 1 cut(s) | 1025 |
| Csp6I | GTAC | 4 cut(s) | 142, 1245, 2304, 2891 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2397, 2432 |
| CviAII | CATG | 6 cut(s) | 316, 416, 788, 1493, 1515, 2926 |
| CviQI | GTAC | 4 cut(s) | 142, 1245, 2304, 2891 |
| DpnI | GATC | 8 cut(s) | 363, 578, 1122, 1470, 1920, 2595, 2700, 2955 |
| DpnII | GATC | 8 cut(s) | 361, 576, 1120, 1468, 1918, 2593, 2698, 2953 |
| DraI | TTTAAA | 3 cut(s) | 2317, 2403, 2443 |
| DraIII | CACNNNGTG | 1 cut(s) | 282 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1481 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1481 |
| EaeI | YGGCCR | 3 cut(s) | 480, 1826, 2880 |
| Eam1104I | CTCTTC | 3 cut(s) | 383, 1653, 1815 |
| EarI | CTCTTC | 3 cut(s) | 383, 1653, 1815 |
| Ecl136II | GAGCTC | 2 cut(s) | 211, 1093 |
| Eco130I | CCWWGG | 1 cut(s) | 315 |
| Eco24I | GRGCYC | 3 cut(s) | 213, 1095, 1182 |
| Eco31I | GGTCTC | 1 cut(s) | 1940 |
| Eco47I | GGWCC | 5 cut(s) | 791, 2017, 2208, 2453, 2655 |
| Eco53kI | GAGCTC | 2 cut(s) | 211, 1093 |
| Eco57I | CTGAAG | 2 cut(s) | 1868, 2342 |
| Eco81I | CCTNAGG | 1 cut(s) | 654 |
| Eco88I | CYCGRG | 1 cut(s) | 2117 |
| EcoICRI | GAGCTC | 2 cut(s) | 211, 1093 |
| EcoO109I | RGGNCCY | 2 cut(s) | 21, 1748 |
| EcoRI | GAATTC | 3 cut(s) | 336, 1266, 1776 |
| EcoRII | CCWGG | 2 cut(s) | 1549, 2203 |
| EcoT14I | CCWWGG | 1 cut(s) | 315 |
| EcoT22I | ATGCAT | 1 cut(s) | 1494 |
| EcoT38I | GRGCYC | 3 cut(s) | 213, 1095, 1182 |
| ErhI | CCWWGG | 1 cut(s) | 315 |
| Esp3I | CGTCTC | 2 cut(s) | 121, 1028 |
| FaeI | CATG | 6 cut(s) | 319, 419, 791, 1496, 1518, 2929 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1571, 1603 |
| FaqI | GGGAC | 3 cut(s) | 1895, 2221, 2998 |
| FatI | CATG | 6 cut(s) | 315, 415, 787, 1492, 1514, 2925 |
| FauI | CCCGC | 2 cut(s) | 110, 2985 |
| FauNDI | CATATG | 1 cut(s) | 1784 |
| Fnu4HI | GCNGC | 2 cut(s) | 1561, 2883 |
| FriOI | GRGCYC | 3 cut(s) | 213, 1095, 1182 |
| Fsp4HI | GCNGC | 2 cut(s) | 1561, 2883 |
| FspI | TGCGCA | 1 cut(s) | 2715 |
| GlaI | GCGC | 1 cut(s) | 2715 |
| GluI | GCNGC | 2 cut(s) | 1561, 2883 |
| GsaI | CCCAGC | 1 cut(s) | 1064 |
| GsuI | CTGGAG | 2 cut(s) | 189, 2324 |
| HaeIII | GGCC | 6 cut(s) | 23, 482, 1749, 1828, 2253, 2882 |
| HapII | CCGG | 8 cut(s) | 145, 324, 344, 1825, 1873, 2300, 2696, 3016 |
| HgaI | GACGC | 1 cut(s) | 1025 |
| HhaI | GCGC | 1 cut(s) | 2716 |
| Hin1II | CATG | 6 cut(s) | 319, 419, 791, 1496, 1518, 2929 |
| Hin6I | GCGC | 1 cut(s) | 2714 |
| HinP1I | GCGC | 1 cut(s) | 2714 |
| HincII | GTYRAC | 3 cut(s) | 1532, 2038, 2514 |
| HindII | GTYRAC | 3 cut(s) | 1532, 2038, 2514 |
| HindIII | AAGCTT | 3 cut(s) | 2045, 2360, 2648 |
| HpaI | GTTAAC | 1 cut(s) | 2514 |
| HpaII | CCGG | 8 cut(s) | 145, 324, 344, 1825, 1873, 2300, 2696, 3016 |
| HphI | GGTGA | 5 cut(s) | 104, 249, 995, 1021, 2773 |
| Hpy166II | GTNNAC | 6 cut(s) | 794, 865, 1532, 1646, 2038, 2514 |
| Hpy8I | GTNNAC | 6 cut(s) | 794, 865, 1532, 1646, 2038, 2514 |
| Hpy99I | CGWCG | 2 cut(s) | 374, 2558 |
| HpyCH4III | ACNGT | 5 cut(s) | 1638, 2006, 2055, 2812, 2984 |
| HpyCH4IV | ACGT | 3 cut(s) | 372, 550, 1021 |
| HpyCH4V | TGCA | 8 cut(s) | 139, 1352, 1492, 1622, 1855, 1994, 2627, 2676 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 145, 1834, 2637 |
| HpySE526I | ACGT | 3 cut(s) | 372, 550, 1021 |
| Hsp92II | CATG | 6 cut(s) | 319, 419, 791, 1496, 1518, 2929 |
| HspAI | GCGC | 1 cut(s) | 2714 |
| KpnI | GGTACC | 1 cut(s) | 2307 |
| KspAI | GTTAAC | 1 cut(s) | 2514 |
| Kzo9I | GATC | 8 cut(s) | 361, 576, 1120, 1468, 1918, 2593, 2698, 2953 |
| LguI | GCTCTTC | 1 cut(s) | 383 |
| LmnI | GCTCC | 4 cut(s) | 191, 655, 1185, 1546 |
| Lsp1109I | GCAGC | 1 cut(s) | 1572 |
| LweI | GCATC | 7 cut(s) | 1300, 1479, 1609, 1689, 1842, 2342, 2627 |
| MaeII | ACGT | 3 cut(s) | 372, 550, 1021 |
| MaeIII | GTNAC | 6 cut(s) | 431, 941, 1003, 1100, 1254, 2000 |
| MalI | GATC | 8 cut(s) | 363, 578, 1122, 1470, 1920, 2595, 2700, 2955 |
| MbiI | CCGCTC | 1 cut(s) | 2885 |
| MboI | GATC | 8 cut(s) | 361, 576, 1120, 1468, 1918, 2593, 2698, 2953 |
| MfeI | CAATTG | 2 cut(s) | 2235, 2815 |
| MflI | RGATCY | 5 cut(s) | 361, 1918, 2593, 2698, 2953 |
| MhlI | GDGCHC | 4 cut(s) | 14, 213, 1095, 1182 |
| MlsI | TGGCCA | 1 cut(s) | 482 |
| MluNI | TGGCCA | 1 cut(s) | 482 |
| MlyI | GAGTC | 6 cut(s) | 320, 618, 1262, 1937, 1996, 2405 |
| MmeI | TCCRAC | 5 cut(s) | 393, 589, 1050, 1301, 2571 |
| Mox20I | TGGCCA | 1 cut(s) | 482 |
| Mph1103I | ATGCAT | 1 cut(s) | 1494 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2860 |
| MscI | TGGCCA | 1 cut(s) | 482 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1539 |
| Msp20I | TGGCCA | 1 cut(s) | 482 |
| MspCI | CTTAAG | 1 cut(s) | 2363 |
| MspI | CCGG | 8 cut(s) | 145, 324, 344, 1825, 1873, 2300, 2696, 3016 |
| MspR9I | CCNGG | 4 cut(s) | 1551, 2205, 2301, 3016 |
| MunI | CAATTG | 2 cut(s) | 2235, 2815 |
| Mva1269I | GAATGC | 3 cut(s) | 1352, 1691, 2716 |
| MvaI | CCWGG | 2 cut(s) | 1551, 2205 |
| MvnI | CGCG | 1 cut(s) | 132 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 145, 1834, 2637 |
| NciI | CCSGG | 2 cut(s) | 2301, 3016 |
| NcoI | CCATGG | 1 cut(s) | 315 |
| NdeI | CATATG | 1 cut(s) | 1784 |
| NdeII | GATC | 8 cut(s) | 361, 576, 1120, 1468, 1918, 2593, 2698, 2953 |
| NlaIII | CATG | 6 cut(s) | 319, 419, 791, 1496, 1518, 2929 |
| NlaIV | GGNNCC | 8 cut(s) | 363, 874, 1181, 1548, 1750, 2209, 2305, 2454 |
| NmuCI | GTSAC | 4 cut(s) | 941, 1100, 1254, 2000 |
| NsbI | TGCGCA | 1 cut(s) | 2715 |
| NsiI | ATGCAT | 1 cut(s) | 1494 |
| NspV | TTCGAA | 1 cut(s) | 1113 |
| OliI | CACNNNNGTG | 1 cut(s) | 1539 |
| PaeR7I | CTCGAG | 1 cut(s) | 2117 |
| PciSI | GCTCTTC | 1 cut(s) | 383 |
| PctI | GAATGC | 3 cut(s) | 1352, 1691, 2716 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2860 |
| PfeI | GAWTC | 9 cut(s) | 590, 996, 1289, 1318, 1667, 1972, 2111, 2155, 2778 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2165 |
| PfoI | TCCNGGA | 1 cut(s) | 3014 |
| PkrI | GCNGC | 2 cut(s) | 1562, 2884 |
| PleI | GAGTC | 6 cut(s) | 319, 618, 1261, 1936, 1995, 2404 |
| PpsI | GAGTC | 6 cut(s) | 319, 618, 1261, 1936, 1995, 2404 |
| PshBI | ATTAAT | 1 cut(s) | 2661 |
| PsiI | TTATAA | 1 cut(s) | 513 |
| Psp124BI | GAGCTC | 2 cut(s) | 213, 1095 |
| Psp6I | CCWGG | 2 cut(s) | 1549, 2203 |
| PspFI | CCCAGC | 1 cut(s) | 1060 |
| PspGI | CCWGG | 2 cut(s) | 1549, 2203 |
| PspN4I | GGNNCC | 8 cut(s) | 363, 874, 1181, 1548, 1750, 2209, 2305, 2454 |
| PspPI | GGNCC | 7 cut(s) | 21, 791, 1748, 2017, 2208, 2453, 2655 |
| PstI | CTGCAG | 1 cut(s) | 141 |
| PsuI | RGATCY | 5 cut(s) | 361, 1918, 2593, 2698, 2953 |
| RsaI | GTAC | 4 cut(s) | 143, 1246, 2305, 2892 |
| RsaNI | GTAC | 4 cut(s) | 142, 1245, 2304, 2891 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1539 |
| SacI | GAGCTC | 2 cut(s) | 213, 1095 |
| SapI | GCTCTTC | 1 cut(s) | 383 |
| SatI | GCNGC | 2 cut(s) | 1561, 2883 |
| Sau3AI | GATC | 8 cut(s) | 361, 576, 1120, 1468, 1918, 2593, 2698, 2953 |
| Sau96I | GGNCC | 7 cut(s) | 21, 791, 1748, 2017, 2208, 2453, 2655 |
| SchI | GAGTC | 6 cut(s) | 320, 618, 1262, 1937, 1996, 2405 |
| ScrFI | CCNGG | 4 cut(s) | 1551, 2205, 2301, 3016 |
| SduI | GDGCHC | 4 cut(s) | 14, 213, 1095, 1182 |
| SfaNI | GCATC | 7 cut(s) | 1300, 1479, 1609, 1689, 1842, 2342, 2627 |
| SfcI | CTRYAG | 1 cut(s) | 137 |
| Sfr274I | CTCGAG | 1 cut(s) | 2117 |
| SfuI | TTCGAA | 1 cut(s) | 1113 |
| SinI | GGWCC | 5 cut(s) | 791, 2017, 2208, 2453, 2655 |
| SlaI | CTCGAG | 1 cut(s) | 2117 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1539 |
| SmlI | CTYRAG | 7 cut(s) | 79, 214, 1088, 1771, 1976, 2117, 2363 |
| SmoI | CTYRAG | 7 cut(s) | 79, 214, 1088, 1771, 1976, 2117, 2363 |
| SpeI | ACTAGT | 2 cut(s) | 796, 2258 |
| SsiI | CCGC | 9 cut(s) | 103, 130, 1066, 2033, 2211, 2307, 2768, 2883, 2978 |
| SspI | AATATT | 2 cut(s) | 1403, 2859 |
| SstI | GAGCTC | 2 cut(s) | 213, 1095 |
| StyD4I | CCNGG | 4 cut(s) | 1549, 2203, 2299, 3014 |
| StyI | CCWWGG | 1 cut(s) | 315 |
| TaaI | ACNGT | 5 cut(s) | 1638, 2006, 2055, 2812, 2984 |
| TaiI | ACGT | 3 cut(s) | 375, 553, 1024 |
| TaqII | GACCGA | 2 cut(s) | 189, 2643 |
| TatI | WGTACW | 1 cut(s) | 1244 |
| TauI | GCSGC | 1 cut(s) | 2885 |
| TfiI | GAWTC | 9 cut(s) | 590, 996, 1289, 1318, 1667, 1972, 2111, 2155, 2778 |
| TscAI | CASTG | 3 cut(s) | 65, 2221, 2987 |
| TseFI | GTSAC | 4 cut(s) | 941, 1100, 1254, 2000 |
| TseI | GCWGC | 1 cut(s) | 1560 |
| Tsp45I | GTSAC | 4 cut(s) | 941, 1100, 1254, 2000 |
| TspDTI | ATGAA | 8 cut(s) | 306, 414, 432, 776, 871, 2192, 2220, 2853 |
| TspGWI | ACGGA | 2 cut(s) | 1899, 2983 |
| TspRI | CASTG | 3 cut(s) | 65, 2221, 2987 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2165 |
| Vha464I | CTTAAG | 1 cut(s) | 2363 |
| VpaK11BI | GGWCC | 5 cut(s) | 791, 2017, 2208, 2453, 2655 |
| VspI | ATTAAT | 1 cut(s) | 2661 |
| XbaI | TCTAGA | 1 cut(s) | 964 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 57, 283 |
| XhoI | CTCGAG | 1 cut(s) | 2117 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2860 |
| Zsp2I | ATGCAT | 1 cut(s) | 1494 |