TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 134 - 206 | 3.4e-14 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 365 - 497 | 9.6e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 459 - 624 | 1.5e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| C-JID | PF20160 | 684 - 826 | 7.7e-12 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 2528 |
| AccBSI | CCGCTC | 1 cut(s) | 2512 |
| AccI | GTMKAC | 1 cut(s) | 634 |
| AciI | CCGC | 2 cut(s) | 715, 2512 |
| AclWI | GGATC | 1 cut(s) | 149 |
| AcoI | YGGCCR | 1 cut(s) | 499 |
| AcsI | RAATTY | 9 cut(s) | 348, 800, 855, 1264, 1385, 1745, 2033, 2061, 2122 |
| AcuI | CTGAAG | 3 cut(s) | 163, 362, 1668 |
| AcvI | CACGTG | 1 cut(s) | 1774 |
| AfaI | GTAC | 3 cut(s) | 1081, 2322, 2525 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1055, 1247 |
| AflIII | ACRYGT | 2 cut(s) | 1831, 2325 |
| AgsI | TTSAA | 9 cut(s) | 473, 1280, 1796, 1891, 1986, 2038, 2431, 2581, 2590 |
| AhlI | ACTAGT | 1 cut(s) | 2101 |
| AjiI | CACGTC | 1 cut(s) | 290 |
| AjnI | CCWGG | 2 cut(s) | 628, 2050 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 33, 65, 1314, 1346 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1883, 1915, 2469, 2501 |
| Alw21I | GWGCWC | 3 cut(s) | 177, 2284, 2452 |
| Alw26I | GTCTC | 2 cut(s) | 1157, 1646 |
| AlwI | GGATC | 1 cut(s) | 149 |
| Ama87I | CYCGRG | 1 cut(s) | 2507 |
| AoxI | GGCC | 3 cut(s) | 499, 826, 1333 |
| ApaI | GGGCCC | 1 cut(s) | 830 |
| ApeKI | GCWGC | 2 cut(s) | 1138, 1436 |
| ApoI | RAATTY | 9 cut(s) | 348, 800, 855, 1264, 1385, 1745, 2033, 2061, 2122 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 20, 52 |
| AseI | ATTAAT | 1 cut(s) | 467 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 603, 1268, 1981 |
| AspS9I | GGNCC | 4 cut(s) | 826, 827, 1008, 2540 |
| AsuHPI | GGTGA | 2 cut(s) | 2105, 2287 |
| AvaI | CYCGRG | 1 cut(s) | 2507 |
| AvaII | GGWCC | 2 cut(s) | 1008, 2540 |
| AxyI | CCTNAGG | 1 cut(s) | 210 |
| BaeGI | GKGCMC | 1 cut(s) | 830 |
| BanII | GRGCYC | 3 cut(s) | 177, 830, 2452 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 207, 239, 2304, 2336 |
| BbrPI | CACGTG | 1 cut(s) | 1774 |
| BbsI | GAAGAC | 3 cut(s) | 1031, 1721, 2602 |
| Bbv12I | GWGCWC | 3 cut(s) | 177, 2284, 2452 |
| BbvI | GCAGC | 2 cut(s) | 1150, 1423 |
| BceAI | ACGGC | 1 cut(s) | 486 |
| BciT130I | CCWGG | 2 cut(s) | 630, 2052 |
| BciVI | GTATCC | 1 cut(s) | 885 |
| BclI | TGATCA | 1 cut(s) | 9 |
| BcoDI | GTCTC | 2 cut(s) | 1157, 1646 |
| BcuI | ACTAGT | 1 cut(s) | 2101 |
| BfaI | CTAG | 8 cut(s) | 93, 311, 324, 398, 512, 729, 1328, 2102 |
| BfmI | CTRYAG | 3 cut(s) | 15, 2344, 2401 |
| BfuAI | ACCTGC | 1 cut(s) | 2528 |
| BfuI | GTATCC | 1 cut(s) | 885 |
| BglII | AGATCT | 1 cut(s) | 307 |
| BisI | GCNGC | 2 cut(s) | 1139, 1437 |
| BlsI | GCNGC | 2 cut(s) | 1140, 1438 |
| Bme1390I | CCNGG | 2 cut(s) | 630, 2052 |
| Bme18I | GGWCC | 2 cut(s) | 1008, 2540 |
| BmeT110I | CYCGRG | 1 cut(s) | 2507 |
| BmgBI | CACGTC | 1 cut(s) | 290 |
| BmgT120I | GGNCC | 4 cut(s) | 826, 827, 1008, 2540 |
| BmiI | GGNNCC | 4 cut(s) | 828, 829, 1009, 1449 |
| BmrFI | CCNGG | 2 cut(s) | 630, 2052 |
| BmrI | ACTGGG | 2 cut(s) | 1014, 2257 |
| BmsI | GCATC | 7 cut(s) | 114, 382, 558, 720, 768, 1349, 1772 |
| BmuI | ACTGGG | 2 cut(s) | 1014, 2257 |
| BpiI | GAAGAC | 3 cut(s) | 1031, 1721, 2602 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 731, 763 |
| BpmI | CTGGAG | 1 cut(s) | 1367 |
| BpuEI | CTTGAG | 5 cut(s) | 191, 733, 1217, 1391, 1781 |
| BsaAI | YACGTR | 3 cut(s) | 638, 1774, 1834 |
| BsaBI | GATNNNNATC | 2 cut(s) | 8, 873 |
| BsaI | GGTCTC | 1 cut(s) | 1646 |
| BsaJI | CCNNGG | 3 cut(s) | 1571, 2191, 2488 |
| BsaWI | WCCGGW | 1 cut(s) | 2020 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2469, 2499 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1055, 1247 |
| Bse1I | ACTGG | 6 cut(s) | 483, 975, 1009, 1078, 1360, 2252 |
| Bse21I | CCTNAGG | 1 cut(s) | 210 |
| Bse3DI | GCAATG | 1 cut(s) | 1107 |
| Bse8I | GATNNNNATC | 2 cut(s) | 8, 873 |
| BseBI | CCWGG | 2 cut(s) | 630, 2052 |
| BseDI | CCNNGG | 3 cut(s) | 1571, 2191, 2488 |
| BseGI | GGATG | 8 cut(s) | 105, 433, 711, 1103, 1154, 1364, 2145, 2201 |
| BseJI | GATNNNNATC | 2 cut(s) | 8, 873 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1055, 1247 |
| BseMI | GCAATG | 1 cut(s) | 1107 |
| BseMII | CTCAG | 5 cut(s) | 201, 374, 1220, 1697, 1905 |
| BseNI | ACTGG | 6 cut(s) | 483, 975, 1009, 1078, 1360, 2252 |
| BseRI | GAGGAG | 2 cut(s) | 427, 2474 |
| BseSI | GKGCMC | 1 cut(s) | 830 |
| BseXI | GCAGC | 2 cut(s) | 1150, 1423 |
| BsgI | GTGCAG | 1 cut(s) | 2129 |
| BshFI | GGCC | 3 cut(s) | 501, 828, 1335 |
| BsiHKAI | GWGCWC | 3 cut(s) | 177, 2284, 2452 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2507 |
| BsiSI | CCGG | 1 cut(s) | 2021 |
| BslFI | GGGAC | 4 cut(s) | 300, 974, 1303, 2240 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1055, 1247 |
| BsmAI | GTCTC | 2 cut(s) | 1157, 1646 |
| BsmFI | GGGAC | 4 cut(s) | 300, 974, 1303, 2240 |
| BsmI | GAATGC | 1 cut(s) | 191 |
| BsnI | GGCC | 3 cut(s) | 501, 828, 1335 |
| Bso31I | GGTCTC | 1 cut(s) | 1646 |
| BsoBI | CYCGRG | 1 cut(s) | 2507 |
| Bsp120I | GGGCCC | 1 cut(s) | 826 |
| Bsp1286I | GDGCHC | 4 cut(s) | 177, 830, 2284, 2452 |
| Bsp1407I | TGTACA | 1 cut(s) | 2320 |
| Bsp143I | GATC | 6 cut(s) | 9, 131, 154, 307, 1633, 2170 |
| BspACI | CCGC | 2 cut(s) | 715, 2512 |
| BspANI | GGCC | 3 cut(s) | 501, 828, 1335 |
| BspCNI | CTCAG | 5 cut(s) | 202, 375, 1221, 1698, 1906 |
| BspLI | GGNNCC | 4 cut(s) | 828, 829, 1009, 1449 |
| BspMI | ACCTGC | 1 cut(s) | 2528 |
| BspPI | GGATC | 1 cut(s) | 149 |
| BspQI | GCTCTTC | 2 cut(s) | 182, 1815 |
| BspTNI | GGTCTC | 1 cut(s) | 1646 |
| BsrBI | CCGCTC | 1 cut(s) | 2512 |
| BsrDI | GCAATG | 1 cut(s) | 1107 |
| BsrGI | TGTACA | 1 cut(s) | 2320 |
| BsrI | ACTGG | 6 cut(s) | 483, 975, 1009, 1078, 1360, 2252 |
| BssECI | CCNNGG | 3 cut(s) | 1571, 2191, 2488 |
| BssMI | GATC | 6 cut(s) | 9, 131, 154, 307, 1633, 2170 |
| BssT1I | CCWWGG | 2 cut(s) | 1571, 2191 |
| Bst2UI | CCWGG | 2 cut(s) | 630, 2052 |
| Bst4CI | ACNGT | 4 cut(s) | 793, 1294, 1866, 2497 |
| Bst6I | CTCTTC | 4 cut(s) | 182, 732, 1815, 2582 |
| BstAUI | TGTACA | 1 cut(s) | 2320 |
| BstBAI | YACGTR | 3 cut(s) | 638, 1774, 1834 |
| BstC8I | GCNNGC | 4 cut(s) | 725, 745, 1806, 2465 |
| BstDSI | CCRYGG | 1 cut(s) | 2488 |
| BstF5I | GGATG | 8 cut(s) | 105, 433, 711, 1103, 1154, 1364, 2145, 2201 |
| BstKTI | GATC | 6 cut(s) | 12, 134, 157, 310, 1636, 2173 |
| BstMAI | GTCTC | 2 cut(s) | 1157, 1646 |
| BstMBI | GATC | 6 cut(s) | 9, 131, 154, 307, 1633, 2170 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 2406, 2526 |
| BstNI | CCWGG | 2 cut(s) | 630, 2052 |
| BstNSI | RCATGY | 1 cut(s) | 1684 |
| BstSCI | CCNGG | 2 cut(s) | 628, 2050 |
| BstSFI | CTRYAG | 3 cut(s) | 15, 2344, 2401 |
| BstSLI | GKGCMC | 1 cut(s) | 830 |
| BstSNI | TACGTA | 1 cut(s) | 638 |
| BstV1I | GCAGC | 2 cut(s) | 1150, 1423 |
| BstV2I | GAAGAC | 3 cut(s) | 1031, 1721, 2602 |
| BstX2I | RGATCY | 2 cut(s) | 154, 307 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1572 |
| BstYI | RGATCY | 2 cut(s) | 154, 307 |
| Bsu36I | CCTNAGG | 1 cut(s) | 210 |
| BsuI | GTATCC | 1 cut(s) | 885 |
| BsuRI | GGCC | 3 cut(s) | 501, 828, 1335 |
| BtgI | CCRYGG | 1 cut(s) | 2488 |
| BtrI | CACGTC | 1 cut(s) | 290 |
| BtsCI | GGATG | 8 cut(s) | 105, 433, 711, 1103, 1154, 1364, 2145, 2201 |
| BtsIMutI | CAGTG | 3 cut(s) | 1045, 1071, 2502 |
| BveI | ACCTGC | 1 cut(s) | 2528 |
| Cac8I | GCNNGC | 4 cut(s) | 725, 745, 1806, 2465 |
| Cfr13I | GGNCC | 4 cut(s) | 826, 827, 1008, 2540 |
| Csp6I | GTAC | 3 cut(s) | 1080, 2321, 2524 |
| CviAII | CATG | 9 cut(s) | 318, 445, 572, 671, 1637, 1681, 2127, 2302, 2368 |
| CviQI | GTAC | 3 cut(s) | 1080, 2321, 2524 |
| DpnI | GATC | 6 cut(s) | 11, 133, 156, 309, 1635, 2172 |
| DpnII | GATC | 6 cut(s) | 9, 131, 154, 307, 1633, 2170 |
| DraI | TTTAAA | 2 cut(s) | 813, 2257 |
| EaeI | YGGCCR | 1 cut(s) | 499 |
| Eam1104I | CTCTTC | 4 cut(s) | 182, 732, 1815, 2582 |
| EarI | CTCTTC | 4 cut(s) | 182, 732, 1815, 2582 |
| Ecl136II | GAGCTC | 2 cut(s) | 175, 2450 |
| Eco105I | TACGTA | 1 cut(s) | 638 |
| Eco130I | CCWWGG | 2 cut(s) | 1571, 2191 |
| Eco24I | GRGCYC | 3 cut(s) | 177, 830, 2452 |
| Eco31I | GGTCTC | 1 cut(s) | 1646 |
| Eco32I | GATATC | 1 cut(s) | 1669 |
| Eco47I | GGWCC | 2 cut(s) | 1008, 2540 |
| Eco53kI | GAGCTC | 2 cut(s) | 175, 2450 |
| Eco57I | CTGAAG | 3 cut(s) | 163, 362, 1668 |
| Eco72I | CACGTG | 1 cut(s) | 1774 |
| Eco81I | CCTNAGG | 1 cut(s) | 210 |
| Eco88I | CYCGRG | 1 cut(s) | 2507 |
| EcoICRI | GAGCTC | 2 cut(s) | 175, 2450 |
| EcoO109I | RGGNCCY | 1 cut(s) | 827 |
| EcoRI | GAATTC | 3 cut(s) | 855, 1385, 2122 |
| EcoRII | CCWGG | 2 cut(s) | 628, 2050 |
| EcoRV | GATATC | 1 cut(s) | 1669 |
| EcoT14I | CCWWGG | 2 cut(s) | 1571, 2191 |
| EcoT22I | ATGCAT | 2 cut(s) | 193, 573 |
| EcoT38I | GRGCYC | 3 cut(s) | 177, 830, 2452 |
| ErhI | CCWWGG | 2 cut(s) | 1571, 2191 |
| FaeI | CATG | 9 cut(s) | 321, 448, 575, 674, 1640, 1684, 2130, 2305, 2371 |
| FaqI | GGGAC | 4 cut(s) | 300, 974, 1303, 2240 |
| FatI | CATG | 9 cut(s) | 317, 444, 571, 670, 1636, 1680, 2126, 2301, 2367 |
| FauNDI | CATATG | 1 cut(s) | 1257 |
| FbaI | TGATCA | 1 cut(s) | 9 |
| FblI | GTMKAC | 1 cut(s) | 634 |
| Fnu4HI | GCNGC | 2 cut(s) | 1139, 1437 |
| FokI | GGATG | 8 cut(s) | 92, 440, 698, 1090, 1161, 1371, 2152, 2208 |
| FriOI | GRGCYC | 3 cut(s) | 177, 830, 2452 |
| Fsp4HI | GCNGC | 2 cut(s) | 1139, 1437 |
| FspBI | CTAG | 8 cut(s) | 93, 311, 324, 398, 512, 729, 1328, 2102 |
| GluI | GCNGC | 2 cut(s) | 1139, 1437 |
| GsuI | CTGGAG | 1 cut(s) | 1367 |
| HaeIII | GGCC | 3 cut(s) | 501, 828, 1335 |
| HapII | CCGG | 1 cut(s) | 2021 |
| Hin1II | CATG | 9 cut(s) | 321, 448, 575, 674, 1640, 1684, 2130, 2305, 2371 |
| HincII | GTYRAC | 2 cut(s) | 1093, 1954 |
| HindII | GTYRAC | 2 cut(s) | 1093, 1954 |
| HindIII | AAGCTT | 2 cut(s) | 1757, 2407 |
| HpaII | CCGG | 1 cut(s) | 2021 |
| HphI | GGTGA | 2 cut(s) | 2105, 2287 |
| Hpy166II | GTNNAC | 7 cut(s) | 635, 1093, 1117, 1954, 2323, 2331, 2500 |
| Hpy8I | GTNNAC | 7 cut(s) | 635, 1093, 1117, 1954, 2323, 2331, 2500 |
| Hpy99I | CGWCG | 1 cut(s) | 2534 |
| HpyAV | CCTTC | 7 cut(s) | 451, 888, 1320, 1346, 1599, 1643, 1955 |
| HpyCH4III | ACNGT | 4 cut(s) | 793, 1294, 1866, 2497 |
| HpyCH4IV | ACGT | 5 cut(s) | 289, 637, 1773, 1833, 2327 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 2406, 2526 |
| HpySE526I | ACGT | 5 cut(s) | 289, 637, 1773, 1833, 2327 |
| Hsp92II | CATG | 9 cut(s) | 321, 448, 575, 674, 1640, 1684, 2130, 2305, 2371 |
| Ksp22I | TGATCA | 1 cut(s) | 9 |
| Kzo9I | GATC | 6 cut(s) | 9, 131, 154, 307, 1633, 2170 |
| LguI | GCTCTTC | 2 cut(s) | 182, 1815 |
| LmnI | GCTCC | 5 cut(s) | 460, 1367, 1447, 1652, 2447 |
| Lsp1109I | GCAGC | 2 cut(s) | 1150, 1423 |
| LweI | GCATC | 7 cut(s) | 114, 382, 558, 720, 768, 1349, 1772 |
| MaeI | CTAG | 8 cut(s) | 93, 311, 324, 398, 512, 729, 1328, 2102 |
| MaeII | ACGT | 5 cut(s) | 289, 637, 1773, 1833, 2327 |
| MaeIII | GTNAC | 5 cut(s) | 551, 1827, 2161, 2240, 2260 |
| MalI | GATC | 6 cut(s) | 11, 133, 156, 309, 1635, 2172 |
| MbiI | CCGCTC | 1 cut(s) | 2512 |
| MboI | GATC | 6 cut(s) | 9, 131, 154, 307, 1633, 2170 |
| MfeI | CAATTG | 1 cut(s) | 1936 |
| MflI | RGATCY | 2 cut(s) | 154, 307 |
| MhlI | GDGCHC | 4 cut(s) | 177, 830, 2284, 2452 |
| MlyI | GAGTC | 8 cut(s) | 623, 1570, 1625, 1696, 1941, 2314, 2499, 2509 |
| MmeI | TCCRAC | 4 cut(s) | 18, 139, 383, 928 |
| Mph1103I | ATGCAT | 2 cut(s) | 193, 573 |
| MroXI | GAANNNNTTC | 3 cut(s) | 603, 1268, 1981 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2366 |
| MspI | CCGG | 1 cut(s) | 2021 |
| MspR9I | CCNGG | 2 cut(s) | 630, 2052 |
| MunI | CAATTG | 1 cut(s) | 1936 |
| Mva1269I | GAATGC | 1 cut(s) | 191 |
| MvaI | CCWGG | 2 cut(s) | 630, 2052 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 2406, 2526 |
| NdeI | CATATG | 1 cut(s) | 1257 |
| NdeII | GATC | 6 cut(s) | 9, 131, 154, 307, 1633, 2170 |
| NlaIII | CATG | 9 cut(s) | 321, 448, 575, 674, 1640, 1684, 2130, 2305, 2371 |
| NlaIV | GGNNCC | 4 cut(s) | 828, 829, 1009, 1449 |
| NsiI | ATGCAT | 2 cut(s) | 193, 573 |
| NspI | RCATGY | 1 cut(s) | 1684 |
| PaeR7I | CTCGAG | 1 cut(s) | 2507 |
| PciSI | GCTCTTC | 2 cut(s) | 182, 1815 |
| PctI | GAATGC | 1 cut(s) | 191 |
| PdmI | GAANNNNTTC | 3 cut(s) | 603, 1268, 1981 |
| PfoI | TCCNGGA | 1 cut(s) | 2050 |
| PkrI | GCNGC | 2 cut(s) | 1140, 1438 |
| PleI | GAGTC | 8 cut(s) | 622, 1569, 1624, 1696, 1941, 2313, 2499, 2509 |
| PmaCI | CACGTG | 1 cut(s) | 1774 |
| PmlI | CACGTG | 1 cut(s) | 1774 |
| PpsI | GAGTC | 8 cut(s) | 622, 1569, 1624, 1696, 1941, 2313, 2499, 2509 |
| Ppu21I | YACGTR | 3 cut(s) | 638, 1774, 1834 |
| PshBI | ATTAAT | 1 cut(s) | 467 |
| Psp124BI | GAGCTC | 2 cut(s) | 177, 2452 |
| Psp6I | CCWGG | 2 cut(s) | 628, 2050 |
| PspCI | CACGTG | 1 cut(s) | 1774 |
| PspGI | CCWGG | 2 cut(s) | 628, 2050 |
| PspN4I | GGNNCC | 4 cut(s) | 828, 829, 1009, 1449 |
| PspOMI | GGGCCC | 1 cut(s) | 826 |
| PspPI | GGNCC | 4 cut(s) | 826, 827, 1008, 2540 |
| PspXI | VCTCGAGB | 1 cut(s) | 2507 |
| PsuI | RGATCY | 2 cut(s) | 154, 307 |
| RsaI | GTAC | 3 cut(s) | 1081, 2322, 2525 |
| RsaNI | GTAC | 3 cut(s) | 1080, 2321, 2524 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2366 |
| SacI | GAGCTC | 2 cut(s) | 177, 2452 |
| SapI | GCTCTTC | 2 cut(s) | 182, 1815 |
| SatI | GCNGC | 2 cut(s) | 1139, 1437 |
| Sau3AI | GATC | 6 cut(s) | 9, 131, 154, 307, 1633, 2170 |
| Sau96I | GGNCC | 4 cut(s) | 826, 827, 1008, 2540 |
| SchI | GAGTC | 8 cut(s) | 623, 1570, 1625, 1696, 1941, 2314, 2499, 2509 |
| ScrFI | CCNGG | 2 cut(s) | 630, 2052 |
| SduI | GDGCHC | 4 cut(s) | 177, 830, 2284, 2452 |
| SfaNI | GCATC | 7 cut(s) | 114, 382, 558, 720, 768, 1349, 1772 |
| SfcI | CTRYAG | 3 cut(s) | 15, 2344, 2401 |
| Sfr274I | CTCGAG | 1 cut(s) | 2507 |
| SinI | GGWCC | 2 cut(s) | 1008, 2540 |
| SlaI | CTCGAG | 1 cut(s) | 2507 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2366 |
| SmlI | CTYRAG | 6 cut(s) | 170, 748, 1196, 1370, 1760, 2507 |
| SmoI | CTYRAG | 6 cut(s) | 170, 748, 1196, 1370, 1760, 2507 |
| SnaBI | TACGTA | 1 cut(s) | 638 |
| SpeI | ACTAGT | 1 cut(s) | 2101 |
| SsiI | CCGC | 2 cut(s) | 715, 2512 |
| SspI | AATATT | 2 cut(s) | 32, 2041 |
| SspMI | CTAG | 8 cut(s) | 93, 311, 324, 398, 512, 729, 1328, 2102 |
| SstI | GAGCTC | 2 cut(s) | 177, 2452 |
| StyD4I | CCNGG | 2 cut(s) | 628, 2050 |
| StyI | CCWWGG | 2 cut(s) | 1571, 2191 |
| TaaI | ACNGT | 4 cut(s) | 793, 1294, 1866, 2497 |
| TaiI | ACGT | 5 cut(s) | 292, 640, 1776, 1836, 2330 |
| TaqI | TCGA | 9 cut(s) | 26, 617, 773, 798, 1339, 1817, 1880, 2208, 2508 |
| TatI | WGTACW | 2 cut(s) | 2320, 2523 |
| TscAI | CASTG | 3 cut(s) | 1045, 1078, 2502 |
| TseI | GCWGC | 2 cut(s) | 1138, 1436 |
| TspDTI | ATGAA | 9 cut(s) | 659, 1010, 1244, 1274, 1302, 1974, 2115, 2376, 2450 |
| TspGWI | ACGGA | 7 cut(s) | 695, 950, 978, 1097, 1262, 2244, 2505 |
| TspRI | CASTG | 3 cut(s) | 1045, 1078, 2502 |
| VpaK11BI | GGWCC | 2 cut(s) | 1008, 2540 |
| VspI | ATTAAT | 1 cut(s) | 467 |
| XapI | RAATTY | 9 cut(s) | 348, 800, 855, 1264, 1385, 1745, 2033, 2061, 2122 |
| XceI | RCATGY | 1 cut(s) | 1684 |
| XhoI | CTCGAG | 1 cut(s) | 2507 |
| XmiI | GTMKAC | 1 cut(s) | 634 |
| XmnI | GAANNNNTTC | 3 cut(s) | 603, 1268, 1981 |
| XspI | CTAG | 8 cut(s) | 93, 311, 324, 398, 512, 729, 1328, 2102 |
| Zsp2I | ATGCAT | 2 cut(s) | 193, 573 |