TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 12 - 182 | 9.4e-53 | TIR domain |
| TIR_2 | PF13676 | 15 - 111 | 2.1e-13 | TIR domain |
| NB-ARC | PF00931 | 206 - 360 | 1.6e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 428 - 498 | 2.5e-19 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 665 - 768 | 7.4e-14 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 756 - 839 | 1.2e-10 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 759 - 844 | 1.8e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 833 - 889 | 4.7e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 847 - 1011 | 7.7e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 915 - 1041 | 2e-10 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 926 - 981 | 7.5e-07 | Leucine rich repeat |
| C-JID | PF20160 | 1059 - 1191 | 8e-18 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 3402 |
| AatII | GACGTC | 2 cut(s) | 624, 1542 |
| AccB1I | GGYRCC | 3 cut(s) | 1410, 2940, 3441 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1465, 3214 |
| AccBSI | CCGCTC | 1 cut(s) | 680 |
| AccIII | TCCGGA | 1 cut(s) | 3143 |
| AciI | CCGC | 6 cut(s) | 651, 680, 1326, 1483, 2944, 3314 |
| AclWI | GGATC | 5 cut(s) | 134, 320, 1967, 2799, 3426 |
| AcoI | YGGCCR | 1 cut(s) | 2902 |
| AcuI | CTGAAG | 6 cut(s) | 459, 1034, 1110, 2936, 3140, 3551 |
| AcyI | GRCGYC | 2 cut(s) | 621, 1539 |
| AfaI | GTAC | 7 cut(s) | 339, 1161, 1356, 1954, 3091, 3200, 3664 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 903, 1465, 3214, 3319, 3688 |
| AflIII | ACRYGT | 2 cut(s) | 1546, 1803 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3019 |
| AjnI | CCWGG | 5 cut(s) | 1504, 1975, 3175, 3244, 3681 |
| AjuI | GAANNNNNNNTTGG | 8 cut(s) | 546, 578, 919, 951, 1086, 1118, 2637, 2669 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1380, 1412 |
| Alw21I | GWGCWC | 2 cut(s) | 1611, 3344 |
| Alw26I | GTCTC | 2 cut(s) | 732, 1145 |
| AlwI | GGATC | 5 cut(s) | 134, 320, 1967, 2799, 3426 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3000 |
| Ama87I | CYCGRG | 1 cut(s) | 3725 |
| Aor13HI | TCCGGA | 1 cut(s) | 3143 |
| AoxI | GGCC | 4 cut(s) | 2272, 2341, 2902, 3616 |
| ApeKI | GCWGC | 5 cut(s) | 185, 304, 583, 2994, 3650 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2713, 2745 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 1070, 1098, 1298, 1710, 1827, 2211, 2925 |
| AspLEI | GCGC | 2 cut(s) | 1515, 1771 |
| AspS9I | GGNCC | 2 cut(s) | 1740, 3743 |
| AsuC2I | CCSGG | 2 cut(s) | 1487, 1744 |
| AsuHPI | GGTGA | 3 cut(s) | 2667, 3079, 3197 |
| AvaI | CYCGRG | 1 cut(s) | 3725 |
| AvaII | GGWCC | 2 cut(s) | 1740, 3743 |
| BaeGI | GKGCMC | 1 cut(s) | 3444 |
| BanI | GGYRCC | 3 cut(s) | 1410, 2940, 3441 |
| BanII | GRGCYC | 2 cut(s) | 1169, 1611 |
| BauI | CACGAG | 2 cut(s) | 2033, 2246 |
| BbsI | GAAGAC | 3 cut(s) | 1441, 2246, 2459 |
| Bbv12I | GWGCWC | 2 cut(s) | 1611, 3344 |
| BbvI | GCAGC | 5 cut(s) | 172, 291, 595, 3006, 3662 |
| BccI | CCATC | 6 cut(s) | 414, 1265, 2620, 3037, 3262, 3468 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1358, 1392, 2014, 2048, 2730, 2764 |
| BciT130I | CCWGG | 5 cut(s) | 1506, 1977, 3177, 3246, 3683 |
| BciVI | GTATCC | 2 cut(s) | 61, 1758 |
| BclI | TGATCA | 2 cut(s) | 376, 1359 |
| BcnI | CCSGG | 2 cut(s) | 1487, 1744 |
| BcoDI | GTCTC | 2 cut(s) | 732, 1145 |
| BfmI | CTRYAG | 1 cut(s) | 3231 |
| BfuI | GTATCC | 2 cut(s) | 61, 1758 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1510 |
| BglII | AGATCT | 5 cut(s) | 425, 1186, 2242, 2290, 2503 |
| BisI | GCNGC | 6 cut(s) | 186, 305, 584, 2944, 2995, 3651 |
| BlsI | GCNGC | 6 cut(s) | 187, 306, 585, 2945, 2996, 3652 |
| BmcAI | AGTACT | 3 cut(s) | 1161, 1356, 3664 |
| Bme1390I | CCNGG | 7 cut(s) | 1487, 1506, 1744, 1977, 3177, 3246, 3683 |
| Bme18I | GGWCC | 2 cut(s) | 1740, 3743 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3019 |
| BmeT110I | CYCGRG | 1 cut(s) | 3725 |
| BmgT120I | GGNCC | 2 cut(s) | 1740, 3743 |
| BmiI | GGNNCC | 6 cut(s) | 835, 1412, 1688, 2942, 3443, 3745 |
| BmrFI | CCNGG | 7 cut(s) | 1487, 1506, 1744, 1977, 3177, 3246, 3683 |
| BmrI | ACTGGG | 4 cut(s) | 1172, 2751, 2817, 3741 |
| BmsI | GCATC | 6 cut(s) | 2572, 2825, 2907, 3250, 3637, 3662 |
| BmuI | ACTGGG | 4 cut(s) | 1172, 2751, 2817, 3741 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2127 |
| BpiI | GAAGAC | 3 cut(s) | 1441, 2246, 2459 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 680, 712, 682, 714 |
| BpmI | CTGGAG | 3 cut(s) | 156, 1998, 3198 |
| BpuEI | CTTGAG | 3 cut(s) | 559, 1518, 1949 |
| BpuMI | CCSGG | 2 cut(s) | 1487, 1744 |
| BsaBI | GATNNNNATC | 4 cut(s) | 424, 2295, 2508, 3483 |
| BsaHI | GRCGYC | 2 cut(s) | 621, 1539 |
| BsaI | GGTCTC | 1 cut(s) | 1145 |
| BsaJI | CCNNGG | 1 cut(s) | 26 |
| BsaWI | WCCGGW | 2 cut(s) | 2116, 3143 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1605, 1635, 1971, 2001 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 903, 1465, 3214, 3319, 3688 |
| Bse3DI | GCAATG | 2 cut(s) | 2957, 3101 |
| Bse8I | GATNNNNATC | 4 cut(s) | 424, 2295, 2508, 3483 |
| BseAI | TCCGGA | 1 cut(s) | 3143 |
| BseBI | CCWGG | 5 cut(s) | 1506, 1977, 3177, 3246, 3683 |
| BseDI | CCNNGG | 1 cut(s) | 26 |
| BseJI | GATNNNNATC | 4 cut(s) | 424, 2295, 2508, 3483 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 903, 1465, 3214, 3319, 3688 |
| BseMI | GCAATG | 2 cut(s) | 2957, 3101 |
| BseMII | CTCAG | 5 cut(s) | 1596, 1773, 1888, 2000, 2883 |
| BseRI | GAGGAG | 5 cut(s) | 15, 75, 2162, 2348, 3587 |
| BseSI | GKGCMC | 1 cut(s) | 3444 |
| BseXI | GCAGC | 5 cut(s) | 172, 291, 595, 3006, 3662 |
| BseYI | CCCAGC | 1 cut(s) | 1765 |
| BsgI | GTGCAG | 2 cut(s) | 87, 3759 |
| BshFI | GGCC | 4 cut(s) | 2274, 2343, 2904, 3618 |
| BshNI | GGYRCC | 3 cut(s) | 1410, 2940, 3441 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1611, 3344 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3725 |
| BsiSI | CCGG | 5 cut(s) | 1486, 1743, 2117, 2738, 3144 |
| BslFI | GGGAC | 2 cut(s) | 2392, 3408 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 903, 1465, 3214, 3319, 3688 |
| BsmAI | GTCTC | 2 cut(s) | 732, 1145 |
| BsmFI | GGGAC | 2 cut(s) | 2392, 3408 |
| BsmI | GAATGC | 7 cut(s) | 284, 1070, 1449, 1636, 2205, 2773, 3278 |
| BsnI | GGCC | 4 cut(s) | 2274, 2343, 2904, 3618 |
| Bso31I | GGTCTC | 1 cut(s) | 1145 |
| BsoBI | CYCGRG | 1 cut(s) | 3725 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1169, 1611, 3344, 3444 |
| Bsp13I | TCCGGA | 1 cut(s) | 3143 |
| Bsp1407I | TGTACA | 1 cut(s) | 1952 |
| BspACI | CCGC | 6 cut(s) | 651, 680, 1326, 1483, 2944, 3314 |
| BspANI | GGCC | 4 cut(s) | 2274, 2343, 2904, 3618 |
| BspCNI | CTCAG | 5 cut(s) | 1597, 1774, 1887, 2001, 2884 |
| BspEI | TCCGGA | 1 cut(s) | 3143 |
| BspHI | TCATGA | 2 cut(s) | 379, 700 |
| BspLI | GGNNCC | 6 cut(s) | 835, 1412, 1688, 2942, 3443, 3745 |
| BspPI | GGATC | 5 cut(s) | 134, 320, 1967, 2799, 3426 |
| BspQI | GCTCTTC | 1 cut(s) | 22 |
| BspT107I | GGYRCC | 3 cut(s) | 1410, 2940, 3441 |
| BspTNI | GGTCTC | 1 cut(s) | 1145 |
| BsrBI | CCGCTC | 1 cut(s) | 680 |
| BsrDI | GCAATG | 2 cut(s) | 2957, 3101 |
| BsrGI | TGTACA | 1 cut(s) | 1952 |
| BssECI | CCNNGG | 1 cut(s) | 26 |
| BssNI | GRCGYC | 2 cut(s) | 621, 1539 |
| BssSI | CACGAG | 2 cut(s) | 2033, 2246 |
| Bst2BI | CACGAG | 2 cut(s) | 2033, 2246 |
| Bst2UI | CCWGG | 5 cut(s) | 1506, 1977, 3177, 3246, 3683 |
| Bst6I | CTCTTC | 7 cut(s) | 22, 1053, 1177, 1219, 1281, 2355, 3681 |
| BstACI | GRCGYC | 2 cut(s) | 621, 1539 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 182, 1453, 3000, 3674 |
| BstAUI | TGTACA | 1 cut(s) | 1952 |
| BstC8I | GCNNGC | 5 cut(s) | 1511, 2047, 2414, 2948, 3679 |
| BstDEI | CTNAG | 7 cut(s) | 1190, 1605, 1782, 1874, 2009, 2795, 2892 |
| BstEII | GGTNACC | 2 cut(s) | 1082, 2673 |
| BstHHI | GCGC | 2 cut(s) | 1515, 1771 |
| BstMAI | GTCTC | 2 cut(s) | 732, 1145 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 12, 182, 1323, 1453, 1510, 1815, 2409, 3000, 3674 |
| BstNI | CCWGG | 5 cut(s) | 1506, 1977, 3177, 3246, 3683 |
| BstNSI | RCATGY | 3 cut(s) | 1550, 1807, 2416 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2127 |
| BstPI | GGTNACC | 2 cut(s) | 1082, 2673 |
| BstSCI | CCNGG | 7 cut(s) | 1485, 1504, 1742, 1975, 3175, 3244, 3681 |
| BstSFI | CTRYAG | 1 cut(s) | 3231 |
| BstSLI | GKGCMC | 1 cut(s) | 3444 |
| BstV1I | GCAGC | 5 cut(s) | 172, 291, 595, 3006, 3662 |
| BstV2I | GAAGAC | 3 cut(s) | 1441, 2246, 2459 |
| BstX2I | RGATCY | 6 cut(s) | 425, 1186, 2242, 2290, 2503, 2791 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3467 |
| BstYI | RGATCY | 6 cut(s) | 425, 1186, 2242, 2290, 2503, 2791 |
| BsuI | GTATCC | 2 cut(s) | 61, 1758 |
| BsuRI | GGCC | 4 cut(s) | 2274, 2343, 2904, 3618 |
| BtgZI | GCGATG | 1 cut(s) | 1383 |
| BtsI | GCAGTG | 3 cut(s) | 99, 2056, 2482 |
| Cac8I | GCNNGC | 5 cut(s) | 1511, 2047, 2414, 2948, 3679 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3000 |
| CciI | TCATGA | 2 cut(s) | 379, 700 |
| CfoI | GCGC | 2 cut(s) | 1515, 1771 |
| Cfr13I | GGNCC | 2 cut(s) | 1740, 3743 |
| Csp6I | GTAC | 7 cut(s) | 338, 1160, 1355, 1953, 3090, 3199, 3663 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 2460, 2495, 3452, 3487 |
| CviQI | GTAC | 7 cut(s) | 338, 1160, 1355, 1953, 3090, 3199, 3663 |
| DdeI | CTNAG | 7 cut(s) | 1190, 1605, 1782, 1874, 2009, 2795, 2892 |
| DraI | TTTAAA | 2 cut(s) | 361, 3718 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3402 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3019 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3402 |
| EaeI | YGGCCR | 1 cut(s) | 2902 |
| Eam1104I | CTCTTC | 7 cut(s) | 22, 1053, 1177, 1219, 1281, 2355, 3681 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3019 |
| EarI | CTCTTC | 7 cut(s) | 22, 1053, 1177, 1219, 1281, 2355, 3681 |
| EciI | GGCGGA | 1 cut(s) | 1472 |
| Ecl136II | GAGCTC | 1 cut(s) | 1609 |
| Eco24I | GRGCYC | 2 cut(s) | 1169, 1611 |
| Eco31I | GGTCTC | 1 cut(s) | 1145 |
| Eco32I | GATATC | 1 cut(s) | 3481 |
| Eco47I | GGWCC | 2 cut(s) | 1740, 3743 |
| Eco53kI | GAGCTC | 1 cut(s) | 1609 |
| Eco57I | CTGAAG | 6 cut(s) | 459, 1034, 1110, 2936, 3140, 3551 |
| Eco88I | CYCGRG | 1 cut(s) | 3725 |
| Eco91I | GGTNACC | 2 cut(s) | 1082, 2673 |
| EcoICRI | GAGCTC | 1 cut(s) | 1609 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3743 |
| EcoO65I | GGTNACC | 2 cut(s) | 1082, 2673 |
| EcoRI | GAATTC | 3 cut(s) | 270, 463, 1728 |
| EcoRII | CCWGG | 5 cut(s) | 1504, 1975, 3175, 3244, 3681 |
| EcoRV | GATATC | 1 cut(s) | 3481 |
| EcoT22I | ATGCAT | 2 cut(s) | 238, 284 |
| EcoT38I | GRGCYC | 2 cut(s) | 1169, 1611 |
| FaqI | GGGAC | 2 cut(s) | 2392, 3408 |
| FauI | CCCGC | 2 cut(s) | 644, 3321 |
| FauNDI | CATATG | 1 cut(s) | 1429 |
| FbaI | TGATCA | 2 cut(s) | 376, 1359 |
| Fnu4HI | GCNGC | 6 cut(s) | 186, 305, 584, 2944, 2995, 3651 |
| FriOI | GRGCYC | 2 cut(s) | 1169, 1611 |
| Fsp4HI | GCNGC | 6 cut(s) | 186, 305, 584, 2944, 2995, 3651 |
| GlaI | GCGC | 2 cut(s) | 1514, 1770 |
| GluI | GCNGC | 6 cut(s) | 186, 305, 584, 2944, 2995, 3651 |
| GsaI | CCCAGC | 1 cut(s) | 1769 |
| GsuI | CTGGAG | 3 cut(s) | 156, 1998, 3198 |
| HaeIII | GGCC | 4 cut(s) | 2274, 2343, 2904, 3618 |
| HapII | CCGG | 5 cut(s) | 1486, 1743, 2117, 2738, 3144 |
| HhaI | GCGC | 2 cut(s) | 1515, 1771 |
| Hin1I | GRCGYC | 2 cut(s) | 621, 1539 |
| Hin6I | GCGC | 2 cut(s) | 1513, 1769 |
| HinP1I | GCGC | 2 cut(s) | 1513, 1769 |
| HincII | GTYRAC | 3 cut(s) | 243, 2850, 3407 |
| HindII | GTYRAC | 3 cut(s) | 243, 2850, 3407 |
| HindIII | AAGCTT | 5 cut(s) | 2102, 2315, 2528, 2576, 2948 |
| HpaI | GTTAAC | 1 cut(s) | 2850 |
| HpaII | CCGG | 5 cut(s) | 1486, 1743, 2117, 2738, 3144 |
| HphI | GGTGA | 3 cut(s) | 2667, 3079, 3197 |
| Hpy166II | GTNNAC | 6 cut(s) | 243, 761, 1724, 2850, 3255, 3407 |
| Hpy188I | TCNGA | 7 cut(s) | 334, 820, 1613, 2010, 2499, 2815, 2955 |
| Hpy8I | GTNNAC | 6 cut(s) | 243, 761, 1724, 2850, 3255, 3407 |
| HpyCH4IV | ACGT | 4 cut(s) | 245, 321, 621, 1539 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 12, 182, 1323, 1453, 1510, 1815, 2409, 3000, 3674 |
| HpyF3I | CTNAG | 7 cut(s) | 1190, 1605, 1782, 1874, 2009, 2795, 2892 |
| HpySE526I | ACGT | 4 cut(s) | 245, 321, 621, 1539 |
| Hsp92I | GRCGYC | 2 cut(s) | 621, 1539 |
| HspAI | GCGC | 2 cut(s) | 1513, 1769 |
| Kpn2I | TCCGGA | 1 cut(s) | 3143 |
| Ksp22I | TGATCA | 2 cut(s) | 376, 1359 |
| KspAI | GTTAAC | 1 cut(s) | 2850 |
| LguI | GCTCTTC | 1 cut(s) | 22 |
| LmnI | GCTCC | 6 cut(s) | 28, 833, 1461, 2149, 3178, 3574 |
| Lsp1109I | GCAGC | 5 cut(s) | 172, 291, 595, 3006, 3662 |
| LweI | GCATC | 6 cut(s) | 2572, 2825, 2907, 3250, 3637, 3662 |
| MaeII | ACGT | 4 cut(s) | 245, 321, 621, 1539 |
| MaeIII | GTNAC | 9 cut(s) | 860, 892, 1082, 1232, 1345, 2673, 2729, 2798, 3749 |
| MbiI | CCGCTC | 1 cut(s) | 680 |
| MfeI | CAATTG | 1 cut(s) | 189 |
| MflI | RGATCY | 6 cut(s) | 425, 1186, 2242, 2290, 2503, 2791 |
| MhlI | GDGCHC | 4 cut(s) | 1169, 1611, 3344, 3444 |
| MlyI | GAGTC | 5 cut(s) | 734, 1592, 3306, 3449, 3717 |
| MmeI | TCCRAC | 3 cut(s) | 544, 2996, 3396 |
| Mph1103I | ATGCAT | 2 cut(s) | 238, 284 |
| MroI | TCCGGA | 1 cut(s) | 3143 |
| MroXI | GAANNNNTTC | 7 cut(s) | 1070, 1098, 1298, 1710, 1827, 2211, 2925 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2160, 3630 |
| MspI | CCGG | 5 cut(s) | 1486, 1743, 2117, 2738, 3144 |
| MspR9I | CCNGG | 7 cut(s) | 1487, 1506, 1744, 1977, 3177, 3246, 3683 |
| MunI | CAATTG | 1 cut(s) | 189 |
| Mva1269I | GAATGC | 7 cut(s) | 284, 1070, 1449, 1636, 2205, 2773, 3278 |
| MvaI | CCWGG | 5 cut(s) | 1506, 1977, 3177, 3246, 3683 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 12, 182, 1323, 1453, 1510, 1815, 2409, 3000, 3674 |
| NciI | CCSGG | 2 cut(s) | 1487, 1744 |
| NdeI | CATATG | 1 cut(s) | 1429 |
| NlaIV | GGNNCC | 6 cut(s) | 835, 1412, 1688, 2942, 3443, 3745 |
| NmeAIII | GCCGAG | 1 cut(s) | 3624 |
| NmuCI | GTSAC | 6 cut(s) | 860, 892, 2673, 2729, 2798, 3749 |
| NsiI | ATGCAT | 2 cut(s) | 238, 284 |
| NspI | RCATGY | 3 cut(s) | 1550, 1807, 2416 |
| PaeI | GCATGC | 1 cut(s) | 2416 |
| PaeR7I | CTCGAG | 1 cut(s) | 3725 |
| PagI | TCATGA | 2 cut(s) | 379, 700 |
| PciI | ACATGT | 2 cut(s) | 1546, 1803 |
| PciSI | GCTCTTC | 1 cut(s) | 22 |
| PctI | GAATGC | 7 cut(s) | 284, 1070, 1449, 1636, 2205, 2773, 3278 |
| PdmI | GAANNNNTTC | 7 cut(s) | 1070, 1098, 1298, 1710, 1827, 2211, 2925 |
| PfeI | GAWTC | 9 cut(s) | 120, 197, 693, 1043, 1490, 1888, 2005, 2029, 3273 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1465, 3214 |
| PfoI | TCCNGGA | 2 cut(s) | 1975, 3175 |
| PkrI | GCNGC | 6 cut(s) | 187, 306, 585, 2945, 2996, 3652 |
| PleI | GAGTC | 5 cut(s) | 734, 1592, 3305, 3449, 3717 |
| PpsI | GAGTC | 5 cut(s) | 734, 1592, 3305, 3449, 3717 |
| PpuMI | RGGWCCY | 1 cut(s) | 3743 |
| PscI | ACATGT | 2 cut(s) | 1546, 1803 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2127 |
| Psp124BI | GAGCTC | 1 cut(s) | 1611 |
| Psp5II | RGGWCCY | 1 cut(s) | 3743 |
| Psp6I | CCWGG | 5 cut(s) | 1504, 1975, 3175, 3244, 3681 |
| PspEI | GGTNACC | 2 cut(s) | 1082, 2673 |
| PspFI | CCCAGC | 1 cut(s) | 1765 |
| PspGI | CCWGG | 5 cut(s) | 1504, 1975, 3175, 3244, 3681 |
| PspN4I | GGNNCC | 6 cut(s) | 835, 1412, 1688, 2942, 3443, 3745 |
| PspPI | GGNCC | 2 cut(s) | 1740, 3743 |
| PspPPI | RGGWCCY | 1 cut(s) | 3743 |
| PspXI | VCTCGAGB | 1 cut(s) | 3725 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3000 |
| PsuI | RGATCY | 6 cut(s) | 425, 1186, 2242, 2290, 2503, 2791 |
| RsaI | GTAC | 7 cut(s) | 339, 1161, 1356, 1954, 3091, 3200, 3664 |
| RsaNI | GTAC | 7 cut(s) | 338, 1160, 1355, 1953, 3090, 3199, 3663 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2160, 3630 |
| SacI | GAGCTC | 1 cut(s) | 1611 |
| SapI | GCTCTTC | 1 cut(s) | 22 |
| SatI | GCNGC | 6 cut(s) | 186, 305, 584, 2944, 2995, 3651 |
| Sau96I | GGNCC | 2 cut(s) | 1740, 3743 |
| ScaI | AGTACT | 3 cut(s) | 1161, 1356, 3664 |
| SchI | GAGTC | 5 cut(s) | 734, 1592, 3306, 3449, 3717 |
| ScrFI | CCNGG | 7 cut(s) | 1487, 1506, 1744, 1977, 3177, 3246, 3683 |
| SduI | GDGCHC | 4 cut(s) | 1169, 1611, 3344, 3444 |
| SfaNI | GCATC | 6 cut(s) | 2572, 2825, 2907, 3250, 3637, 3662 |
| SfcI | CTRYAG | 1 cut(s) | 3231 |
| Sfr274I | CTCGAG | 1 cut(s) | 3725 |
| SinI | GGWCC | 2 cut(s) | 1740, 3743 |
| SlaI | CTCGAG | 1 cut(s) | 3725 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2160, 3630 |
| SmlI | CTYRAG | 4 cut(s) | 574, 1533, 1928, 3725 |
| SmoI | CTYRAG | 4 cut(s) | 574, 1533, 1928, 3725 |
| SphI | GCATGC | 1 cut(s) | 2416 |
| SsiI | CCGC | 6 cut(s) | 651, 680, 1326, 1483, 2944, 3314 |
| SspI | AATATT | 2 cut(s) | 917, 1299 |
| SstI | GAGCTC | 1 cut(s) | 1611 |
| StyD4I | CCNGG | 7 cut(s) | 1485, 1504, 1742, 1975, 3175, 3244, 3681 |
| TaiI | ACGT | 4 cut(s) | 248, 324, 624, 1542 |
| TaqI | TCGA | 6 cut(s) | 73, 993, 1404, 1646, 1754, 3726 |
| TatI | WGTACW | 5 cut(s) | 1159, 1354, 1952, 3089, 3662 |
| TauI | GCSGC | 1 cut(s) | 2946 |
| TfiI | GAWTC | 9 cut(s) | 120, 197, 693, 1043, 1490, 1888, 2005, 2029, 3273 |
| TseFI | GTSAC | 6 cut(s) | 860, 892, 2673, 2729, 2798, 3749 |
| TseI | GCWGC | 5 cut(s) | 185, 304, 583, 2994, 3650 |
| Tsp45I | GTSAC | 6 cut(s) | 860, 892, 2673, 2729, 2798, 3749 |
| TspGWI | ACGGA | 5 cut(s) | 614, 733, 3372, 3496, 3536 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1465, 3214 |
| VpaK11BI | GGWCC | 2 cut(s) | 1740, 3743 |
| XbaI | TCTAGA | 3 cut(s) | 1276, 1942, 2912 |
| XceI | RCATGY | 3 cut(s) | 1550, 1807, 2416 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 938, 2979, 3324 |
| XhoI | CTCGAG | 1 cut(s) | 3725 |
| XmnI | GAANNNNTTC | 7 cut(s) | 1070, 1098, 1298, 1710, 1827, 2211, 2925 |
| ZraI | GACGTC | 2 cut(s) | 622, 1540 |
| ZrmI | AGTACT | 3 cut(s) | 1161, 1356, 3664 |
| Zsp2I | ATGCAT | 2 cut(s) | 238, 284 |