TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 22 - 205 | 8e-53 | TIR domain |
| TIR_2 | PF13676 | 25 - 129 | 8.2e-15 | TIR domain |
| NB-ARC | PF00931 | 219 - 370 | 2.2e-23 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 439 - 508 | 7.4e-15 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_8 | PF13855 | 840 - 897 | 2.4e-08 | Leucine rich repeat |
| LRR_13 | PF23286 | 859 - 914 | 5e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_4 | PF12799 | 864 - 907 | 2.8e-06 | Leucine Rich repeats (2 copies) |
| C-JID | PF20160 | 992 - 1053 | 9.8e-07 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3279 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 605 |
| AatII | GACGTC | 1 cut(s) | 75 |
| Acc65I | GGTACC | 1 cut(s) | 2288 |
| AccB1I | GGYRCC | 1 cut(s) | 2288 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2150 |
| AccI | GTMKAC | 1 cut(s) | 2181 |
| AccII | CGCG | 4 cut(s) | 132, 2924, 2940, 3272 |
| AccIII | TCCGGA | 2 cut(s) | 205, 3043 |
| AclWI | GGATC | 7 cut(s) | 356, 369, 1256, 1911, 2425, 2721, 3054 |
| AcoI | YGGCCR | 3 cut(s) | 1137, 1811, 2901 |
| AcuI | CTGAAG | 3 cut(s) | 420, 1853, 2327 |
| AcyI | GRCGYC | 1 cut(s) | 72 |
| AdeI | CACNNNGTG | 2 cut(s) | 282, 3163 |
| AfaI | GTAC | 4 cut(s) | 731, 781, 1488, 2290 |
| AfeI | AGCGCT | 1 cut(s) | 220 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 720, 1121, 1864, 2150, 3381, 3386 |
| AflII | CTTAAG | 2 cut(s) | 1907, 2348 |
| AflIII | ACRYGT | 1 cut(s) | 1009 |
| AjnI | CCWGG | 8 cut(s) | 2284, 2396, 2953, 2974, 3139, 3178, 3231, 3379 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1220, 1252, 2217, 2249 |
| Alw21I | GWGCWC | 7 cut(s) | 14, 213, 417, 855, 1017, 1083, 2817 |
| Alw26I | GTCTC | 5 cut(s) | 1925, 2276, 2316, 2369, 2598 |
| Alw44I | GTGCAC | 1 cut(s) | 2813 |
| AlwI | GGATC | 7 cut(s) | 356, 369, 1256, 1911, 2425, 2721, 3054 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2483 |
| Ama87I | CYCGRG | 2 cut(s) | 1115, 2102 |
| Aor13HI | TCCGGA | 2 cut(s) | 205, 3043 |
| Aor51HI | AGCGCT | 1 cut(s) | 220 |
| AoxI | GGCC | 7 cut(s) | 1054, 1137, 1732, 1811, 2236, 2901, 3372 |
| ApaLI | GTGCAC | 1 cut(s) | 2813 |
| ApeKI | GCWGC | 4 cut(s) | 1545, 2124, 3037, 3246 |
| AseI | ATTAAT | 2 cut(s) | 1694, 3300 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1509, 2881 |
| Asp718I | GGTACC | 1 cut(s) | 2288 |
| AspLEI | GCGC | 3 cut(s) | 221, 1303, 3274 |
| AspS9I | GGNCC | 7 cut(s) | 1054, 1733, 1914, 2002, 2193, 2670, 3389 |
| AsuC2I | CCSGG | 1 cut(s) | 1536 |
| AsuHPI | GGTGA | 5 cut(s) | 42, 104, 249, 983, 2794 |
| AsuII | TTCGAA | 1 cut(s) | 670 |
| AsuNHI | GCTAGC | 1 cut(s) | 1048 |
| AvaI | CYCGRG | 2 cut(s) | 1115, 2102 |
| AvaII | GGWCC | 5 cut(s) | 1914, 2002, 2193, 2670, 3389 |
| AxyI | CCTNAGG | 1 cut(s) | 654 |
| BaeGI | GKGCMC | 2 cut(s) | 1359, 2817 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 771, 804 |
| BalI | TGGCCA | 1 cut(s) | 1139 |
| BamHI | GGATCC | 1 cut(s) | 361 |
| BanI | GGYRCC | 1 cut(s) | 2288 |
| BanII | GRGCYC | 3 cut(s) | 213, 1083, 1536 |
| BauI | CACGAG | 2 cut(s) | 1524, 3219 |
| BbsI | GAAGAC | 4 cut(s) | 67, 102, 1879, 2627 |
| Bbv12I | GWGCWC | 7 cut(s) | 14, 213, 417, 855, 1017, 1083, 2817 |
| BbvI | GCAGC | 4 cut(s) | 1557, 2111, 3024, 3233 |
| BceAI | ACGGC | 1 cut(s) | 2575 |
| BciT130I | CCWGG | 8 cut(s) | 2286, 2398, 2955, 2976, 3141, 3180, 3233, 3381 |
| BciVI | GTATCC | 2 cut(s) | 1791, 3229 |
| BcnI | CCSGG | 1 cut(s) | 1536 |
| BcoDI | GTCTC | 5 cut(s) | 1925, 2276, 2316, 2369, 2598 |
| BfmI | CTRYAG | 2 cut(s) | 137, 783 |
| BfoI | RGCGCY | 1 cut(s) | 222 |
| BfrI | CTTAAG | 2 cut(s) | 1907, 2348 |
| BfuI | GTATCC | 2 cut(s) | 1791, 3229 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2398 |
| BglII | AGATCT | 1 cut(s) | 1213 |
| BisI | GCNGC | 7 cut(s) | 1546, 1549, 2125, 2390, 2904, 3038, 3247 |
| BlpI | GCTNAGC | 1 cut(s) | 411 |
| BlsI | GCNGC | 7 cut(s) | 1547, 1550, 2126, 2391, 2905, 3039, 3248 |
| Bme1390I | CCNGG | 9 cut(s) | 1536, 2286, 2398, 2955, 2976, 3141, 3180, 3233, 3381 |
| Bme18I | GGWCC | 5 cut(s) | 1914, 2002, 2193, 2670, 3389 |
| BmeT110I | CYCGRG | 2 cut(s) | 1115, 2102 |
| BmgT120I | GGNCC | 7 cut(s) | 1054, 1733, 1914, 2002, 2193, 2670, 3389 |
| BmiI | GGNNCC | 5 cut(s) | 363, 1533, 1735, 2194, 2290 |
| BmrFI | CCNGG | 9 cut(s) | 1536, 2286, 2398, 2955, 2976, 3141, 3180, 3233, 3381 |
| BmtI | GCTAGC | 1 cut(s) | 1052 |
| BpiI | GAAGAC | 4 cut(s) | 67, 102, 1879, 2627 |
| BpmI | CTGGAG | 1 cut(s) | 2258 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2891 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 411 |
| Bpu14I | TTCGAA | 1 cut(s) | 670 |
| BpuEI | CTTGAG | 5 cut(s) | 100, 235, 1097, 1412, 1982 |
| BpuMI | CCSGG | 1 cut(s) | 1536 |
| Bsa29I | ATCGAT | 1 cut(s) | 3428 |
| BsaBI | GATNNNNATC | 2 cut(s) | 921, 958 |
| BsaHI | GRCGYC | 1 cut(s) | 72 |
| BsaI | GGTCTC | 1 cut(s) | 1925 |
| BsaJI | CCNNGG | 9 cut(s) | 315, 1116, 1162, 2078, 2507, 2938, 3140, 3179, 3380 |
| BsaWI | WCCGGW | 3 cut(s) | 205, 2710, 3043 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 8, 38, 2700, 2730 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 720, 1121, 1864, 2150, 3381, 3386 |
| Bse21I | CCTNAGG | 1 cut(s) | 654 |
| Bse3DI | GCAATG | 1 cut(s) | 2013 |
| Bse8I | GATNNNNATC | 2 cut(s) | 921, 958 |
| BseAI | TCCGGA | 2 cut(s) | 205, 3043 |
| BseBI | CCWGG | 8 cut(s) | 2286, 2398, 2955, 2976, 3141, 3180, 3233, 3381 |
| BseCI | ATCGAT | 1 cut(s) | 3428 |
| BseDI | CCNNGG | 9 cut(s) | 315, 1116, 1162, 2078, 2507, 2938, 3140, 3179, 3380 |
| BseJI | GATNNNNATC | 2 cut(s) | 921, 958 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 720, 1121, 1864, 2150, 3381, 3386 |
| BseMI | GCAATG | 1 cut(s) | 2013 |
| BseMII | CTCAG | 4 cut(s) | 402, 645, 2125, 3378 |
| BseRI | GAGGAG | 3 cut(s) | 1544, 3305, 3383 |
| BseSI | GKGCMC | 2 cut(s) | 1359, 2817 |
| BseXI | GCAGC | 4 cut(s) | 1557, 2111, 3024, 3233 |
| BseYI | CCCAGC | 1 cut(s) | 105 |
| BsgI | GTGCAG | 1 cut(s) | 1442 |
| Bsh1236I | CGCG | 4 cut(s) | 132, 2924, 2940, 3272 |
| BshFI | GGCC | 7 cut(s) | 1056, 1139, 1734, 1813, 2238, 2903, 3374 |
| BshNI | GGYRCC | 1 cut(s) | 2288 |
| BshVI | ATCGAT | 1 cut(s) | 3428 |
| BsiHKAI | GWGCWC | 7 cut(s) | 14, 213, 417, 855, 1017, 1083, 2817 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1115, 2102 |
| BsiSI | CCGG | 6 cut(s) | 206, 1536, 1810, 1858, 2711, 3044 |
| BslFI | GGGAC | 1 cut(s) | 2206 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 720, 1121, 1864, 2150, 3381, 3386 |
| BsmAI | GTCTC | 5 cut(s) | 1925, 2276, 2316, 2369, 2598 |
| BsmBI | CGTCTC | 1 cut(s) | 2598 |
| BsmFI | GGGAC | 1 cut(s) | 2206 |
| BsmI | GAATGC | 3 cut(s) | 152, 1340, 1676 |
| BsnI | GGCC | 7 cut(s) | 1056, 1139, 1734, 1813, 2238, 2903, 3374 |
| Bso31I | GGTCTC | 1 cut(s) | 1925 |
| BsoBI | CYCGRG | 2 cut(s) | 1115, 2102 |
| Bsp119I | TTCGAA | 1 cut(s) | 670 |
| Bsp1286I | GDGCHC | 9 cut(s) | 14, 213, 417, 855, 1017, 1083, 1359, 1536, 2817 |
| Bsp13I | TCCGGA | 2 cut(s) | 205, 3043 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 411 |
| Bsp19I | CCATGG | 1 cut(s) | 315 |
| BspANI | GGCC | 7 cut(s) | 1056, 1139, 1734, 1813, 2238, 2903, 3374 |
| BspCNI | CTCAG | 4 cut(s) | 403, 646, 2124, 3377 |
| BspDI | ATCGAT | 1 cut(s) | 3428 |
| BspEI | TCCGGA | 2 cut(s) | 205, 3043 |
| BspFNI | CGCG | 4 cut(s) | 132, 2924, 2940, 3272 |
| BspHI | TCATGA | 1 cut(s) | 1584 |
| BspLI | GGNNCC | 5 cut(s) | 363, 1533, 1735, 2194, 2290 |
| BspOI | GCTAGC | 1 cut(s) | 1052 |
| BspPI | GGATC | 7 cut(s) | 356, 369, 1256, 1911, 2425, 2721, 3054 |
| BspQI | GCTCTTC | 1 cut(s) | 383 |
| BspT104I | TTCGAA | 1 cut(s) | 670 |
| BspT107I | GGYRCC | 1 cut(s) | 2288 |
| BspTI | CTTAAG | 2 cut(s) | 1907, 2348 |
| BspTNI | GGTCTC | 1 cut(s) | 1925 |
| BsrDI | GCAATG | 1 cut(s) | 2013 |
| BssECI | CCNNGG | 9 cut(s) | 315, 1116, 1162, 2078, 2507, 2938, 3140, 3179, 3380 |
| BssNI | GRCGYC | 1 cut(s) | 72 |
| BssSI | CACGAG | 2 cut(s) | 1524, 3219 |
| BssT1I | CCWWGG | 4 cut(s) | 315, 1162, 2078, 2507 |
| Bst2BI | CACGAG | 2 cut(s) | 1524, 3219 |
| Bst2UI | CCWGG | 8 cut(s) | 2286, 2398, 2955, 2976, 3141, 3180, 3233, 3381 |
| Bst4CI | ACNGT | 8 cut(s) | 141, 1067, 1623, 1991, 2040, 2520, 2833, 3031 |
| Bst6I | CTCTTC | 2 cut(s) | 383, 1638 |
| BstACI | GRCGYC | 1 cut(s) | 72 |
| BstAFI | CTTAAG | 2 cut(s) | 1907, 2348 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2652 |
| BstBI | TTCGAA | 1 cut(s) | 670 |
| BstC8I | GCNNGC | 9 cut(s) | 150, 501, 1050, 1054, 1095, 1137, 1501, 2394, 2588 |
| BstDSI | CCRYGG | 2 cut(s) | 315, 2938 |
| BstFNI | CGCG | 4 cut(s) | 132, 2924, 2940, 3272 |
| BstH2I | RGCGCY | 1 cut(s) | 222 |
| BstHHI | GCGC | 3 cut(s) | 221, 1303, 3274 |
| BstMAI | GTCTC | 5 cut(s) | 1925, 2276, 2316, 2369, 2598 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1363, 2398, 2454, 2652 |
| BstNI | CCWGG | 8 cut(s) | 2286, 2398, 2955, 2976, 3141, 3180, 3233, 3381 |
| BstNSI | RCATGY | 4 cut(s) | 503, 1097, 1503, 2332 |
| BstSCI | CCNGG | 9 cut(s) | 1534, 2284, 2396, 2953, 2974, 3139, 3178, 3231, 3379 |
| BstSFI | CTRYAG | 2 cut(s) | 137, 783 |
| BstSLI | GKGCMC | 2 cut(s) | 1359, 2817 |
| BstUI | CGCG | 4 cut(s) | 132, 2924, 2940, 3272 |
| BstV1I | GCAGC | 4 cut(s) | 1557, 2111, 3024, 3233 |
| BstV2I | GAAGAC | 4 cut(s) | 67, 102, 1879, 2627 |
| BstX2I | RGATCY | 4 cut(s) | 361, 1213, 1903, 2713 |
| BstYI | RGATCY | 4 cut(s) | 361, 1213, 1903, 2713 |
| Bsu15I | ATCGAT | 1 cut(s) | 3428 |
| Bsu36I | CCTNAGG | 1 cut(s) | 654 |
| BsuI | GTATCC | 2 cut(s) | 1791, 3229 |
| BsuRI | GGCC | 7 cut(s) | 1056, 1139, 1734, 1813, 2238, 2903, 3374 |
| BsuTUI | ATCGAT | 1 cut(s) | 3428 |
| BtgI | CCRYGG | 2 cut(s) | 315, 2938 |
| BtgZI | GCGATG | 1 cut(s) | 3120 |
| BtsI | GCAGTG | 1 cut(s) | 2025 |
| BtsIMutI | CAGTG | 1 cut(s) | 2025 |
| Cac8I | GCNNGC | 9 cut(s) | 150, 501, 1050, 1054, 1095, 1137, 1501, 2394, 2588 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2483 |
| CciI | TCATGA | 1 cut(s) | 1584 |
| CfoI | GCGC | 3 cut(s) | 221, 1303, 3274 |
| Cfr13I | GGNCC | 7 cut(s) | 1054, 1733, 1914, 2002, 2193, 2670, 3389 |
| Cfr42I | CCGCGG | 1 cut(s) | 2941 |
| ClaI | ATCGAT | 1 cut(s) | 3428 |
| CseI | GACGC | 2 cut(s) | 1229, 3278 |
| Csp6I | GTAC | 4 cut(s) | 730, 780, 1487, 2289 |
| CviQI | GTAC | 4 cut(s) | 730, 780, 1487, 2289 |
| DraI | TTTAAA | 4 cut(s) | 471, 514, 2302, 2464 |
| DraIII | CACNNNGTG | 2 cut(s) | 282, 3163 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 605 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 605 |
| EaeI | YGGCCR | 3 cut(s) | 1137, 1811, 2901 |
| Eam1104I | CTCTTC | 2 cut(s) | 383, 1638 |
| EarI | CTCTTC | 2 cut(s) | 383, 1638 |
| Ecl136II | GAGCTC | 2 cut(s) | 211, 1081 |
| Eco130I | CCWWGG | 4 cut(s) | 315, 1162, 2078, 2507 |
| Eco24I | GRGCYC | 3 cut(s) | 213, 1083, 1536 |
| Eco31I | GGTCTC | 1 cut(s) | 1925 |
| Eco47I | GGWCC | 5 cut(s) | 1914, 2002, 2193, 2670, 3389 |
| Eco47III | AGCGCT | 1 cut(s) | 220 |
| Eco53kI | GAGCTC | 2 cut(s) | 211, 1081 |
| Eco57I | CTGAAG | 3 cut(s) | 420, 1853, 2327 |
| Eco81I | CCTNAGG | 1 cut(s) | 654 |
| Eco88I | CYCGRG | 2 cut(s) | 1115, 2102 |
| EcoICRI | GAGCTC | 2 cut(s) | 211, 1081 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1733 |
| EcoRI | GAATTC | 2 cut(s) | 336, 1254 |
| EcoRII | CCWGG | 8 cut(s) | 2284, 2396, 2953, 2974, 3139, 3178, 3231, 3379 |
| EcoT14I | CCWWGG | 4 cut(s) | 315, 1162, 2078, 2507 |
| EcoT22I | ATGCAT | 1 cut(s) | 1479 |
| EcoT38I | GRGCYC | 3 cut(s) | 213, 1083, 1536 |
| ErhI | CCWWGG | 4 cut(s) | 315, 1162, 2078, 2507 |
| Esp3I | CGTCTC | 1 cut(s) | 2598 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 849, 881 |
| FaqI | GGGAC | 1 cut(s) | 2206 |
| FauI | CCCGC | 3 cut(s) | 110, 1045, 2929 |
| FblI | GTMKAC | 1 cut(s) | 2181 |
| Fnu4HI | GCNGC | 7 cut(s) | 1546, 1549, 2125, 2390, 2904, 3038, 3247 |
| FriOI | GRGCYC | 3 cut(s) | 213, 1083, 1536 |
| Fsp4HI | GCNGC | 7 cut(s) | 1546, 1549, 2125, 2390, 2904, 3038, 3247 |
| GlaI | GCGC | 3 cut(s) | 220, 1302, 3273 |
| GluI | GCNGC | 7 cut(s) | 1546, 1549, 2125, 2390, 2904, 3038, 3247 |
| GsaI | CCCAGC | 1 cut(s) | 109 |
| GsuI | CTGGAG | 1 cut(s) | 2258 |
| HaeII | RGCGCY | 1 cut(s) | 222 |
| HaeIII | GGCC | 7 cut(s) | 1056, 1139, 1734, 1813, 2238, 2903, 3374 |
| HapII | CCGG | 6 cut(s) | 206, 1536, 1810, 1858, 2711, 3044 |
| HgaI | GACGC | 2 cut(s) | 1229, 3278 |
| HhaI | GCGC | 3 cut(s) | 221, 1303, 3274 |
| Hin1I | GRCGYC | 1 cut(s) | 72 |
| Hin6I | GCGC | 3 cut(s) | 219, 1301, 3272 |
| HinP1I | GCGC | 3 cut(s) | 219, 1301, 3272 |
| HincII | GTYRAC | 1 cut(s) | 2043 |
| HindII | GTYRAC | 1 cut(s) | 2043 |
| HindIII | AAGCTT | 5 cut(s) | 465, 2030, 2345, 2435, 2663 |
| HpaII | CCGG | 6 cut(s) | 206, 1536, 1810, 1858, 2711, 3044 |
| HphI | GGTGA | 5 cut(s) | 42, 104, 249, 983, 2794 |
| Hpy166II | GTNNAC | 6 cut(s) | 730, 1631, 2023, 2043, 2182, 2815 |
| Hpy8I | GTNNAC | 6 cut(s) | 730, 1631, 2023, 2043, 2182, 2815 |
| Hpy99I | CGWCG | 4 cut(s) | 74, 374, 2573, 3272 |
| HpyCH4III | ACNGT | 8 cut(s) | 141, 1067, 1623, 1991, 2040, 2520, 2833, 3031 |
| HpyCH4IV | ACGT | 3 cut(s) | 72, 372, 1009 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1363, 2398, 2454, 2652 |
| HpySE526I | ACGT | 3 cut(s) | 72, 372, 1009 |
| Hsp92I | GRCGYC | 1 cut(s) | 72 |
| HspAI | GCGC | 3 cut(s) | 219, 1301, 3272 |
| Kpn2I | TCCGGA | 2 cut(s) | 205, 3043 |
| KpnI | GGTACC | 1 cut(s) | 2292 |
| KspI | CCGCGG | 1 cut(s) | 2941 |
| LguI | GCTCTTC | 1 cut(s) | 383 |
| LmnI | GCTCC | 4 cut(s) | 191, 208, 1531, 3034 |
| Lsp1109I | GCAGC | 4 cut(s) | 1557, 2111, 3024, 3233 |
| MaeII | ACGT | 3 cut(s) | 72, 372, 1009 |
| MaeIII | GTNAC | 6 cut(s) | 929, 971, 991, 1242, 1985, 3359 |
| MfeI | CAATTG | 4 cut(s) | 2220, 2836, 3399, 3405 |
| MflI | RGATCY | 4 cut(s) | 361, 1213, 1903, 2713 |
| MhlI | GDGCHC | 9 cut(s) | 14, 213, 417, 855, 1017, 1083, 1359, 1536, 2817 |
| MlsI | TGGCCA | 1 cut(s) | 1139 |
| MluNI | TGGCCA | 1 cut(s) | 1139 |
| MlyI | GAGTC | 5 cut(s) | 320, 1250, 2482, 3355, 3356 |
| MmeI | TCCRAC | 5 cut(s) | 41, 393, 589, 1289, 1941 |
| Mox20I | TGGCCA | 1 cut(s) | 1139 |
| Mph1103I | ATGCAT | 1 cut(s) | 1479 |
| MroI | TCCGGA | 2 cut(s) | 205, 3043 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1509, 2881 |
| MscI | TGGCCA | 1 cut(s) | 1139 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1464, 1563, 2018, 2613, 2682 |
| Msp20I | TGGCCA | 1 cut(s) | 1139 |
| MspA1I | CMGCKG | 3 cut(s) | 105, 1802, 2940 |
| MspCI | CTTAAG | 2 cut(s) | 1907, 2348 |
| MspI | CCGG | 6 cut(s) | 206, 1536, 1810, 1858, 2711, 3044 |
| MspR9I | CCNGG | 9 cut(s) | 1536, 2286, 2398, 2955, 2976, 3141, 3180, 3233, 3381 |
| MunI | CAATTG | 4 cut(s) | 2220, 2836, 3399, 3405 |
| Mva1269I | GAATGC | 3 cut(s) | 152, 1340, 1676 |
| MvaI | CCWGG | 8 cut(s) | 2286, 2398, 2955, 2976, 3141, 3180, 3233, 3381 |
| MvnI | CGCG | 4 cut(s) | 132, 2924, 2940, 3272 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1363, 2398, 2454, 2652 |
| NciI | CCSGG | 1 cut(s) | 1536 |
| NcoI | CCATGG | 1 cut(s) | 315 |
| NheI | GCTAGC | 1 cut(s) | 1048 |
| NlaIV | GGNNCC | 5 cut(s) | 363, 1533, 1735, 2194, 2290 |
| NmeAIII | GCCGAG | 1 cut(s) | 3400 |
| NmuCI | GTSAC | 5 cut(s) | 929, 971, 1242, 1985, 3359 |
| NsiI | ATGCAT | 1 cut(s) | 1479 |
| NspI | RCATGY | 4 cut(s) | 503, 1097, 1503, 2332 |
| NspV | TTCGAA | 1 cut(s) | 670 |
| PaeI | GCATGC | 3 cut(s) | 503, 1097, 1503 |
| PaeR7I | CTCGAG | 1 cut(s) | 2102 |
| PagI | TCATGA | 1 cut(s) | 1584 |
| PciSI | GCTCTTC | 1 cut(s) | 383 |
| PctI | GAATGC | 3 cut(s) | 152, 1340, 1676 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1509, 2881 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2150 |
| PfoI | TCCNGGA | 3 cut(s) | 2953, 2974, 3231 |
| PkrI | GCNGC | 7 cut(s) | 1547, 1550, 2126, 2391, 2905, 3039, 3248 |
| PleI | GAGTC | 5 cut(s) | 319, 1249, 2481, 3354, 3356 |
| PpsI | GAGTC | 5 cut(s) | 319, 1249, 2481, 3354, 3356 |
| PshBI | ATTAAT | 2 cut(s) | 1694, 3300 |
| PsiI | TTATAA | 1 cut(s) | 3279 |
| Psp124BI | GAGCTC | 2 cut(s) | 213, 1083 |
| Psp6I | CCWGG | 8 cut(s) | 2284, 2396, 2953, 2974, 3139, 3178, 3231, 3379 |
| PspFI | CCCAGC | 1 cut(s) | 105 |
| PspGI | CCWGG | 8 cut(s) | 2284, 2396, 2953, 2974, 3139, 3178, 3231, 3379 |
| PspN4I | GGNNCC | 5 cut(s) | 363, 1533, 1735, 2194, 2290 |
| PspPI | GGNCC | 7 cut(s) | 1054, 1733, 1914, 2002, 2193, 2670, 3389 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2483 |
| PsuI | RGATCY | 4 cut(s) | 361, 1213, 1903, 2713 |
| PvuII | CAGCTG | 1 cut(s) | 1802 |
| RsaI | GTAC | 4 cut(s) | 731, 781, 1488, 2290 |
| RsaNI | GTAC | 4 cut(s) | 730, 780, 1487, 2289 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1464, 1563, 2018, 2613, 2682 |
| SacI | GAGCTC | 2 cut(s) | 213, 1083 |
| SacII | CCGCGG | 1 cut(s) | 2941 |
| SapI | GCTCTTC | 1 cut(s) | 383 |
| SatI | GCNGC | 7 cut(s) | 1546, 1549, 2125, 2390, 2904, 3038, 3247 |
| Sau96I | GGNCC | 7 cut(s) | 1054, 1733, 1914, 2002, 2193, 2670, 3389 |
| SchI | GAGTC | 5 cut(s) | 320, 1250, 2482, 3355, 3356 |
| ScrFI | CCNGG | 9 cut(s) | 1536, 2286, 2398, 2955, 2976, 3141, 3180, 3233, 3381 |
| SduI | GDGCHC | 9 cut(s) | 14, 213, 417, 855, 1017, 1083, 1359, 1536, 2817 |
| SfcI | CTRYAG | 2 cut(s) | 137, 783 |
| Sfr274I | CTCGAG | 1 cut(s) | 2102 |
| Sfr303I | CCGCGG | 1 cut(s) | 2941 |
| SfuI | TTCGAA | 1 cut(s) | 670 |
| SgrBI | CCGCGG | 1 cut(s) | 2941 |
| SinI | GGWCC | 5 cut(s) | 1914, 2002, 2193, 2670, 3389 |
| SlaI | CTCGAG | 1 cut(s) | 2102 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1464, 1563, 2018, 2613, 2682 |
| SmlI | CTYRAG | 8 cut(s) | 79, 214, 1076, 1427, 1907, 1961, 2102, 2348 |
| SmoI | CTYRAG | 8 cut(s) | 79, 214, 1076, 1427, 1907, 1961, 2102, 2348 |
| SphI | GCATGC | 3 cut(s) | 503, 1097, 1503 |
| SspI | AATATT | 4 cut(s) | 1388, 2880, 3004, 3356 |
| SstI | GAGCTC | 2 cut(s) | 213, 1083 |
| StyD4I | CCNGG | 9 cut(s) | 1534, 2284, 2396, 2953, 2974, 3139, 3178, 3231, 3379 |
| StyI | CCWWGG | 4 cut(s) | 315, 1162, 2078, 2507 |
| TaaI | ACNGT | 8 cut(s) | 141, 1067, 1623, 1991, 2040, 2520, 2833, 3031 |
| TaiI | ACGT | 3 cut(s) | 75, 375, 1012 |
| TaqII | GACCGA | 1 cut(s) | 2658 |
| TauI | GCSGC | 3 cut(s) | 1551, 2392, 2906 |
| TscAI | CASTG | 1 cut(s) | 2025 |
| TseFI | GTSAC | 5 cut(s) | 929, 971, 1242, 1985, 3359 |
| TseI | GCWGC | 4 cut(s) | 1545, 2124, 3037, 3246 |
| Tsp45I | GTSAC | 5 cut(s) | 929, 971, 1242, 1985, 3359 |
| TspGWI | ACGGA | 1 cut(s) | 990 |
| TspRI | CASTG | 1 cut(s) | 2025 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2150 |
| Vha464I | CTTAAG | 2 cut(s) | 1907, 2348 |
| VneI | GTGCAC | 1 cut(s) | 2813 |
| VpaK11BI | GGWCC | 5 cut(s) | 1914, 2002, 2193, 2670, 3389 |
| VspI | ATTAAT | 2 cut(s) | 1694, 3300 |
| XbaI | TCTAGA | 4 cut(s) | 1216, 2539, 2554, 2596 |
| XceI | RCATGY | 4 cut(s) | 503, 1097, 1503, 2332 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 36, 283, 2282 |
| XhoI | CTCGAG | 1 cut(s) | 2102 |
| XmiI | GTMKAC | 1 cut(s) | 2181 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1509, 2881 |
| ZraI | GACGTC | 1 cut(s) | 73 |
| Zsp2I | ATGCAT | 1 cut(s) | 1479 |