TMV resistance protein N-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 644 |
| Acc36I | ACCTGC | 1 cut(s) | 2968 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2875 |
| AccBSI | CCGCTC | 1 cut(s) | 1758 |
| AccI | GTMKAC | 2 cut(s) | 1446, 1777 |
| AccII | CGCG | 1 cut(s) | 118 |
| AciI | CCGC | 6 cut(s) | 76, 1758, 2175, 2523, 3036, 3207 |
| AclI | AACGTT | 1 cut(s) | 997 |
| AclWI | GGATC | 3 cut(s) | 918, 1594, 3153 |
| AcoI | YGGCCR | 1 cut(s) | 3033 |
| AcuI | CTGAAG | 7 cut(s) | 206, 614, 1256, 1671, 2450, 2594, 2716 |
| AfaI | GTAC | 8 cut(s) | 342, 1193, 1969, 2511, 2579, 2665, 2958, 2991 |
| AfeI | AGCGCT | 2 cut(s) | 1862, 2816 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 567, 1711, 2065, 2875, 3058, 3082, 3127 |
| AjnI | CCWGG | 1 cut(s) | 2836 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2169, 2201 |
| Alw21I | GWGCWC | 4 cut(s) | 761, 1572, 2323, 3249 |
| Alw26I | GTCTC | 2 cut(s) | 2060, 2252 |
| Alw44I | GTGCAC | 1 cut(s) | 2319 |
| AlwI | GGATC | 3 cut(s) | 918, 1594, 3153 |
| Ama87I | CYCGRG | 2 cut(s) | 6, 1943 |
| Aor51HI | AGCGCT | 2 cut(s) | 1862, 2816 |
| AoxI | GGCC | 4 cut(s) | 3, 1714, 2798, 3033 |
| ApaI | GGGCCC | 2 cut(s) | 1718, 2802 |
| ApaLI | GTGCAC | 1 cut(s) | 2319 |
| ApeKI | GCWGC | 5 cut(s) | 181, 729, 790, 2106, 2634 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 583, 2153, 3283 |
| AspLEI | GCGC | 5 cut(s) | 118, 1397, 1863, 2817, 2948 |
| AspS9I | GGNCC | 6 cut(s) | 4, 1714, 1715, 1914, 2798, 2799 |
| AsuC2I | CCSGG | 3 cut(s) | 7, 8, 80 |
| AsuHPI | GGTGA | 6 cut(s) | 77, 1832, 2375, 2899, 3065, 3208 |
| AvaI | CYCGRG | 2 cut(s) | 6, 1943 |
| AvaII | GGWCC | 1 cut(s) | 1914 |
| BaeGI | GKGCMC | 3 cut(s) | 1718, 2323, 2802 |
| BanII | GRGCYC | 3 cut(s) | 1718, 2802, 3249 |
| BbsI | GAAGAC | 2 cut(s) | 75, 1148 |
| Bbv12I | GWGCWC | 4 cut(s) | 761, 1572, 2323, 3249 |
| BbvCI | CCTCAGC | 1 cut(s) | 1676 |
| BbvI | GCAGC | 5 cut(s) | 168, 741, 802, 2093, 2646 |
| BccI | CCATC | 5 cut(s) | 354, 652, 761, 1280, 1844 |
| BceAI | ACGGC | 1 cut(s) | 3048 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 356, 390 |
| BciT130I | CCWGG | 1 cut(s) | 2838 |
| BciVI | GTATCC | 1 cut(s) | 1773 |
| BclI | TGATCA | 2 cut(s) | 1407, 1837 |
| BcnI | CCSGG | 3 cut(s) | 7, 8, 80 |
| BcoDI | GTCTC | 2 cut(s) | 2060, 2252 |
| BfmI | CTRYAG | 2 cut(s) | 21, 1820 |
| BfoI | RGCGCY | 3 cut(s) | 1398, 1864, 2818 |
| BfuAI | ACCTGC | 1 cut(s) | 2968 |
| BfuI | GTATCC | 1 cut(s) | 1773 |
| BisI | GCNGC | 6 cut(s) | 182, 730, 791, 2107, 2635, 3036 |
| BlsI | GCNGC | 6 cut(s) | 183, 731, 792, 2108, 2636, 3037 |
| BmcAI | AGTACT | 2 cut(s) | 2511, 2579 |
| Bme1390I | CCNGG | 4 cut(s) | 7, 8, 80, 2838 |
| Bme18I | GGWCC | 1 cut(s) | 1914 |
| BmeT110I | CYCGRG | 2 cut(s) | 6, 1943 |
| BmgT120I | GGNCC | 6 cut(s) | 4, 1714, 1715, 1914, 2798, 2799 |
| BmiI | GGNNCC | 7 cut(s) | 330, 1716, 1717, 1916, 2799, 2800, 2801 |
| BmrFI | CCNGG | 4 cut(s) | 7, 8, 80, 2838 |
| BmsI | GCATC | 6 cut(s) | 544, 613, 2303, 2562, 3074, 3166 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1507 |
| BpiI | GAAGAC | 2 cut(s) | 75, 1148 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 743, 775 |
| BpmI | CTGGAG | 1 cut(s) | 2465 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1676 |
| BpuEI | CTTGAG | 1 cut(s) | 1639 |
| BpuMI | CCSGG | 3 cut(s) | 7, 8, 80 |
| Bsa29I | ATCGAT | 3 cut(s) | 582, 913, 1884 |
| BsaAI | YACGTR | 1 cut(s) | 2213 |
| BsaBI | GATNNNNATC | 2 cut(s) | 171, 909 |
| BsaJI | CCNNGG | 5 cut(s) | 6, 32, 79, 2271, 3040 |
| BsaWI | WCCGGW | 1 cut(s) | 1795 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2871, 2901 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 567, 1711, 2065, 2875, 3058, 3082, 3127 |
| Bse1I | ACTGG | 4 cut(s) | 930, 1646, 2185, 3218 |
| Bse3DI | GCAATG | 3 cut(s) | 1323, 1995, 2764 |
| Bse8I | GATNNNNATC | 2 cut(s) | 171, 909 |
| BseBI | CCWGG | 1 cut(s) | 2838 |
| BseCI | ATCGAT | 3 cut(s) | 582, 913, 1884 |
| BseDI | CCNNGG | 5 cut(s) | 6, 32, 79, 2271, 3040 |
| BseGI | GGATG | 7 cut(s) | 535, 663, 772, 1804, 1855, 1991, 2318 |
| BseJI | GATNNNNATC | 2 cut(s) | 171, 909 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 567, 1711, 2065, 2875, 3058, 3082, 3127 |
| BseMI | GCAATG | 3 cut(s) | 1323, 1995, 2764 |
| BseMII | CTCAG | 6 cut(s) | 44, 576, 1667, 2020, 2217, 2844 |
| BseNI | ACTGG | 4 cut(s) | 930, 1646, 2185, 3218 |
| BseRI | GAGGAG | 5 cut(s) | 425, 1037, 1532, 2240, 3146 |
| BseSI | GKGCMC | 3 cut(s) | 1718, 2323, 2802 |
| BseX3I | CGGCCG | 1 cut(s) | 3033 |
| BseXI | GCAGC | 5 cut(s) | 168, 741, 802, 2093, 2646 |
| BseYI | CCCAGC | 1 cut(s) | 458 |
| Bsh1236I | CGCG | 1 cut(s) | 118 |
| Bsh1285I | CGRYCG | 1 cut(s) | 3036 |
| BshFI | GGCC | 4 cut(s) | 5, 1716, 2800, 3035 |
| BshVI | ATCGAT | 3 cut(s) | 582, 913, 1884 |
| BsiEI | CGRYCG | 1 cut(s) | 3036 |
| BsiHKAI | GWGCWC | 4 cut(s) | 761, 1572, 2323, 3249 |
| BsiHKCI | CYCGRG | 2 cut(s) | 6, 1943 |
| BsiSI | CCGG | 3 cut(s) | 7, 79, 1796 |
| BslFI | GGGAC | 2 cut(s) | 152, 175 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 567, 1711, 2065, 2875, 3058, 3082, 3127 |
| BsmAI | GTCTC | 2 cut(s) | 2060, 2252 |
| BsmBI | CGTCTC | 1 cut(s) | 2252 |
| BsmFI | GGGAC | 2 cut(s) | 152, 175 |
| BsmI | GAATGC | 3 cut(s) | 841, 1655, 1738 |
| BsnI | GGCC | 4 cut(s) | 5, 1716, 2800, 3035 |
| BsoBI | CYCGRG | 2 cut(s) | 6, 1943 |
| Bsp120I | GGGCCC | 2 cut(s) | 1714, 2798 |
| Bsp1286I | GDGCHC | 6 cut(s) | 761, 1572, 1718, 2323, 2802, 3249 |
| Bsp1407I | TGTACA | 3 cut(s) | 1191, 1967, 2989 |
| Bsp19I | CCATGG | 1 cut(s) | 32 |
| BspACI | CCGC | 6 cut(s) | 76, 1758, 2175, 2523, 3036, 3207 |
| BspANI | GGCC | 4 cut(s) | 5, 1716, 2800, 3035 |
| BspCNI | CTCAG | 6 cut(s) | 45, 575, 1668, 2019, 2216, 2845 |
| BspDI | ATCGAT | 3 cut(s) | 582, 913, 1884 |
| BspFNI | CGCG | 1 cut(s) | 118 |
| BspHI | TCATGA | 2 cut(s) | 3019, 3293 |
| BspLI | GGNNCC | 7 cut(s) | 330, 1716, 1717, 1916, 2799, 2800, 2801 |
| BspMAI | CTGCAG | 2 cut(s) | 25, 1824 |
| BspMI | ACCTGC | 1 cut(s) | 2968 |
| BspPI | GGATC | 3 cut(s) | 918, 1594, 3153 |
| BspQI | GCTCTTC | 1 cut(s) | 3237 |
| BsrBI | CCGCTC | 1 cut(s) | 1758 |
| BsrDI | GCAATG | 3 cut(s) | 1323, 1995, 2764 |
| BsrGI | TGTACA | 3 cut(s) | 1191, 1967, 2989 |
| BsrI | ACTGG | 4 cut(s) | 930, 1646, 2185, 3218 |
| BssECI | CCNNGG | 5 cut(s) | 6, 32, 79, 2271, 3040 |
| BssNAI | GTATAC | 1 cut(s) | 1447 |
| BssT1I | CCWWGG | 2 cut(s) | 32, 3040 |
| Bst1107I | GTATAC | 1 cut(s) | 1447 |
| Bst2UI | CCWGG | 1 cut(s) | 2838 |
| Bst4CI | ACNGT | 5 cut(s) | 108, 2039, 2616, 2722, 3026 |
| Bst6I | CTCTTC | 6 cut(s) | 285, 1211, 1301, 1626, 2045, 3237 |
| BstAUI | TGTACA | 3 cut(s) | 1191, 1967, 2989 |
| BstBAI | YACGTR | 1 cut(s) | 2213 |
| BstC8I | GCNNGC | 5 cut(s) | 1242, 1399, 1572, 2692, 2924 |
| BstDSI | CCRYGG | 2 cut(s) | 32, 2271 |
| BstENI | CCTNNNNNAGG | 3 cut(s) | 565, 1709, 3056 |
| BstF5I | GGATG | 7 cut(s) | 535, 663, 772, 1804, 1855, 1991, 2318 |
| BstFNI | CGCG | 1 cut(s) | 118 |
| BstH2I | RGCGCY | 3 cut(s) | 1398, 1864, 2818 |
| BstHHI | GCGC | 5 cut(s) | 118, 1397, 1863, 2817, 2948 |
| BstMAI | GTCTC | 2 cut(s) | 2060, 2252 |
| BstMCI | CGRYCG | 1 cut(s) | 3036 |
| BstNI | CCWGG | 1 cut(s) | 2838 |
| BstNSI | RCATGY | 3 cut(s) | 1332, 1568, 3189 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1507 |
| BstSCI | CCNGG | 4 cut(s) | 5, 6, 78, 2836 |
| BstSFI | CTRYAG | 2 cut(s) | 21, 1820 |
| BstSLI | GKGCMC | 3 cut(s) | 1718, 2323, 2802 |
| BstSNI | TACGTA | 1 cut(s) | 2213 |
| BstUI | CGCG | 1 cut(s) | 118 |
| BstV1I | GCAGC | 5 cut(s) | 168, 741, 802, 2093, 2646 |
| BstV2I | GAAGAC | 2 cut(s) | 75, 1148 |
| BstZ17I | GTATAC | 1 cut(s) | 1447 |
| BstZI | CGGCCG | 1 cut(s) | 3033 |
| Bsu15I | ATCGAT | 3 cut(s) | 582, 913, 1884 |
| BsuI | GTATCC | 1 cut(s) | 1773 |
| BsuRI | GGCC | 4 cut(s) | 5, 1716, 2800, 3035 |
| BsuTUI | ATCGAT | 3 cut(s) | 582, 913, 1884 |
| BtgI | CCRYGG | 2 cut(s) | 32, 2271 |
| BtsCI | GGATG | 7 cut(s) | 535, 663, 772, 1804, 1855, 1991, 2318 |
| BtsI | GCAGTG | 1 cut(s) | 2323 |
| BtsIMutI | CAGTG | 5 cut(s) | 1639, 2286, 2323, 2563, 3225 |
| BveI | ACCTGC | 1 cut(s) | 2968 |
| Cac8I | GCNNGC | 5 cut(s) | 1242, 1399, 1572, 2692, 2924 |
| CciI | TCATGA | 2 cut(s) | 3019, 3293 |
| CfoI | GCGC | 5 cut(s) | 118, 1397, 1863, 2817, 2948 |
| Cfr13I | GGNCC | 6 cut(s) | 4, 1714, 1715, 1914, 2798, 2799 |
| Cfr9I | CCCGGG | 1 cut(s) | 6 |
| ClaI | ATCGAT | 3 cut(s) | 582, 913, 1884 |
| Csp6I | GTAC | 8 cut(s) | 341, 1192, 1968, 2510, 2578, 2664, 2957, 2990 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 932, 967 |
| CviQI | GTAC | 8 cut(s) | 341, 1192, 1968, 2510, 2578, 2664, 2957, 2990 |
| DraI | TTTAAA | 3 cut(s) | 1090, 1119, 2025 |
| EaeI | YGGCCR | 1 cut(s) | 3033 |
| EagI | CGGCCG | 1 cut(s) | 3033 |
| Eam1104I | CTCTTC | 6 cut(s) | 285, 1211, 1301, 1626, 2045, 3237 |
| EarI | CTCTTC | 6 cut(s) | 285, 1211, 1301, 1626, 2045, 3237 |
| Ecl136II | GAGCTC | 1 cut(s) | 3247 |
| EclXI | CGGCCG | 1 cut(s) | 3033 |
| Eco105I | TACGTA | 1 cut(s) | 2213 |
| Eco130I | CCWWGG | 2 cut(s) | 32, 3040 |
| Eco24I | GRGCYC | 3 cut(s) | 1718, 2802, 3249 |
| Eco32I | GATATC | 2 cut(s) | 169, 1558 |
| Eco47I | GGWCC | 1 cut(s) | 1914 |
| Eco47III | AGCGCT | 2 cut(s) | 1862, 2816 |
| Eco52I | CGGCCG | 1 cut(s) | 3033 |
| Eco53kI | GAGCTC | 1 cut(s) | 3247 |
| Eco57I | CTGAAG | 7 cut(s) | 206, 614, 1256, 1671, 2450, 2594, 2716 |
| Eco88I | CYCGRG | 2 cut(s) | 6, 1943 |
| EcoICRI | GAGCTC | 1 cut(s) | 3247 |
| EcoNI | CCTNNNNNAGG | 3 cut(s) | 565, 1709, 3056 |
| EcoO109I | RGGNCCY | 5 cut(s) | 1714, 1715, 1914, 2798, 2799 |
| EcoRI | GAATTC | 1 cut(s) | 466 |
| EcoRII | CCWGG | 1 cut(s) | 2836 |
| EcoRV | GATATC | 2 cut(s) | 169, 1558 |
| EcoT14I | CCWWGG | 2 cut(s) | 32, 3040 |
| EcoT22I | ATGCAT | 1 cut(s) | 1467 |
| EcoT38I | GRGCYC | 3 cut(s) | 1718, 2802, 3249 |
| ErhI | CCWWGG | 2 cut(s) | 32, 3040 |
| Esp3I | CGTCTC | 1 cut(s) | 2252 |
| FalI | AAGNNNNNCTT | 3 cut(s) | 1298, 1330, 3271 |
| FaqI | GGGAC | 2 cut(s) | 152, 175 |
| FauI | CCCGC | 2 cut(s) | 83, 1751 |
| FauNDI | CATATG | 2 cut(s) | 1030, 2686 |
| FbaI | TGATCA | 2 cut(s) | 1407, 1837 |
| FblI | GTMKAC | 2 cut(s) | 1446, 1777 |
| Fnu4HI | GCNGC | 6 cut(s) | 182, 730, 791, 2107, 2635, 3036 |
| FokI | GGATG | 7 cut(s) | 522, 670, 779, 1811, 1862, 1978, 2325 |
| FriOI | GRGCYC | 3 cut(s) | 1718, 2802, 3249 |
| Fsp4HI | GCNGC | 6 cut(s) | 182, 730, 791, 2107, 2635, 3036 |
| GlaI | GCGC | 5 cut(s) | 117, 1396, 1862, 2816, 2947 |
| GluI | GCNGC | 6 cut(s) | 182, 730, 791, 2107, 2635, 3036 |
| GsaI | CCCAGC | 1 cut(s) | 462 |
| GsuI | CTGGAG | 1 cut(s) | 2465 |
| HaeII | RGCGCY | 3 cut(s) | 1398, 1864, 2818 |
| HaeIII | GGCC | 4 cut(s) | 5, 1716, 2800, 3035 |
| HapII | CCGG | 3 cut(s) | 7, 79, 1796 |
| HhaI | GCGC | 5 cut(s) | 118, 1397, 1863, 2817, 2948 |
| Hin6I | GCGC | 5 cut(s) | 116, 1395, 1861, 2815, 2946 |
| HinP1I | GCGC | 5 cut(s) | 116, 1395, 1861, 2815, 2946 |
| HindIII | AAGCTT | 1 cut(s) | 2162 |
| HpaII | CCGG | 3 cut(s) | 7, 79, 1796 |
| HphI | GGTGA | 6 cut(s) | 77, 1832, 2375, 2899, 3065, 3208 |
| Hpy166II | GTNNAC | 5 cut(s) | 697, 1223, 1447, 1778, 2321 |
| Hpy8I | GTNNAC | 5 cut(s) | 697, 1223, 1447, 1778, 2321 |
| Hpy99I | CGWCG | 1 cut(s) | 905 |
| HpyCH4III | ACNGT | 5 cut(s) | 108, 2039, 2616, 2722, 3026 |
| HpyCH4IV | ACGT | 2 cut(s) | 997, 2212 |
| HpySE526I | ACGT | 2 cut(s) | 997, 2212 |
| HspAI | GCGC | 5 cut(s) | 116, 1395, 1861, 2815, 2946 |
| Ksp22I | TGATCA | 2 cut(s) | 1407, 1837 |
| LguI | GCTCTTC | 1 cut(s) | 3237 |
| LmnI | GCTCC | 8 cut(s) | 22, 1249, 1354, 1519, 1755, 2468, 2685, 2983 |
| Lsp1109I | GCAGC | 5 cut(s) | 168, 741, 802, 2093, 2646 |
| LweI | GCATC | 6 cut(s) | 544, 613, 2303, 2562, 3074, 3166 |
| MaeII | ACGT | 2 cut(s) | 997, 2212 |
| MaeIII | GTNAC | 4 cut(s) | 1892, 2843, 3166, 3181 |
| MbiI | CCGCTC | 1 cut(s) | 1758 |
| MfeI | CAATTG | 3 cut(s) | 192, 1596, 2725 |
| MhlI | GDGCHC | 6 cut(s) | 761, 1572, 1718, 2323, 2802, 3249 |
| MlyI | GAGTC | 3 cut(s) | 1517, 2062, 3219 |
| MmeI | TCCRAC | 7 cut(s) | 90, 526, 556, 1058, 1083, 2119, 3297 |
| Mph1103I | ATGCAT | 1 cut(s) | 1467 |
| MroXI | GAANNNNTTC | 3 cut(s) | 583, 2153, 3283 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1664 |
| MspI | CCGG | 3 cut(s) | 7, 79, 1796 |
| MspR9I | CCNGG | 4 cut(s) | 7, 8, 80, 2838 |
| MunI | CAATTG | 3 cut(s) | 192, 1596, 2725 |
| Mva1269I | GAATGC | 3 cut(s) | 841, 1655, 1738 |
| MvaI | CCWGG | 1 cut(s) | 2838 |
| MvnI | CGCG | 1 cut(s) | 118 |
| NciI | CCSGG | 3 cut(s) | 7, 8, 80 |
| NcoI | CCATGG | 1 cut(s) | 32 |
| NdeI | CATATG | 2 cut(s) | 1030, 2686 |
| NlaIV | GGNNCC | 7 cut(s) | 330, 1716, 1717, 1916, 2799, 2800, 2801 |
| NmuCI | GTSAC | 1 cut(s) | 2843 |
| NsiI | ATGCAT | 1 cut(s) | 1467 |
| NspI | RCATGY | 3 cut(s) | 1332, 1568, 3189 |
| PaeR7I | CTCGAG | 1 cut(s) | 1943 |
| PagI | TCATGA | 2 cut(s) | 3019, 3293 |
| PciSI | GCTCTTC | 1 cut(s) | 3237 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 349, 3171 |
| PctI | GAATGC | 3 cut(s) | 841, 1655, 1738 |
| PdmI | GAANNNNTTC | 3 cut(s) | 583, 2153, 3283 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2875 |
| PfoI | TCCNGGA | 1 cut(s) | 2836 |
| PkrI | GCNGC | 6 cut(s) | 183, 731, 792, 2108, 2636, 3037 |
| PleI | GAGTC | 3 cut(s) | 1516, 2061, 3218 |
| PpsI | GAGTC | 3 cut(s) | 1516, 2061, 3218 |
| Ppu21I | YACGTR | 1 cut(s) | 2213 |
| PpuMI | RGGWCCY | 1 cut(s) | 1914 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1507 |
| PsiI | TTATAA | 1 cut(s) | 644 |
| Psp124BI | GAGCTC | 1 cut(s) | 3249 |
| Psp1406I | AACGTT | 1 cut(s) | 997 |
| Psp5II | RGGWCCY | 1 cut(s) | 1914 |
| Psp6I | CCWGG | 1 cut(s) | 2836 |
| PspFI | CCCAGC | 1 cut(s) | 458 |
| PspGI | CCWGG | 1 cut(s) | 2836 |
| PspN4I | GGNNCC | 7 cut(s) | 330, 1716, 1717, 1916, 2799, 2800, 2801 |
| PspOMI | GGGCCC | 2 cut(s) | 1714, 2798 |
| PspPI | GGNCC | 6 cut(s) | 4, 1714, 1715, 1914, 2798, 2799 |
| PspPPI | RGGWCCY | 1 cut(s) | 1914 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1794, 1826 |
| PstI | CTGCAG | 2 cut(s) | 25, 1824 |
| RsaI | GTAC | 8 cut(s) | 342, 1193, 1969, 2511, 2579, 2665, 2958, 2991 |
| RsaNI | GTAC | 8 cut(s) | 341, 1192, 1968, 2510, 2578, 2664, 2957, 2990 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1664 |
| SacI | GAGCTC | 1 cut(s) | 3249 |
| SapI | GCTCTTC | 1 cut(s) | 3237 |
| SatI | GCNGC | 6 cut(s) | 182, 730, 791, 2107, 2635, 3036 |
| Sau96I | GGNCC | 6 cut(s) | 4, 1714, 1715, 1914, 2798, 2799 |
| ScaI | AGTACT | 2 cut(s) | 2511, 2579 |
| SchI | GAGTC | 3 cut(s) | 1517, 2062, 3219 |
| ScrFI | CCNGG | 4 cut(s) | 7, 8, 80, 2838 |
| SduI | GDGCHC | 6 cut(s) | 761, 1572, 1718, 2323, 2802, 3249 |
| SfaNI | GCATC | 6 cut(s) | 544, 613, 2303, 2562, 3074, 3166 |
| SfcI | CTRYAG | 2 cut(s) | 21, 1820 |
| Sfr274I | CTCGAG | 1 cut(s) | 1943 |
| SinI | GGWCC | 1 cut(s) | 1914 |
| SlaI | CTCGAG | 1 cut(s) | 1943 |
| SmaI | CCCGGG | 1 cut(s) | 8 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1664 |
| SmlI | CTYRAG | 2 cut(s) | 1618, 1943 |
| SmoI | CTYRAG | 2 cut(s) | 1618, 1943 |
| SnaBI | TACGTA | 1 cut(s) | 2213 |
| SrfI | GCCCGGGC | 1 cut(s) | 8 |
| SsiI | CCGC | 6 cut(s) | 76, 1758, 2175, 2523, 3036, 3207 |
| SspI | AATATT | 2 cut(s) | 2971, 3269 |
| SstI | GAGCTC | 1 cut(s) | 3249 |
| StyD4I | CCNGG | 4 cut(s) | 5, 6, 78, 2836 |
| StyI | CCWWGG | 2 cut(s) | 32, 3040 |
| TaaI | ACNGT | 5 cut(s) | 108, 2039, 2616, 2722, 3026 |
| TaiI | ACGT | 2 cut(s) | 1000, 2215 |
| TaqI | TCGA | 9 cut(s) | 227, 582, 900, 913, 1008, 1501, 1686, 1884, 1944 |
| TatI | WGTACW | 6 cut(s) | 1191, 1967, 2509, 2577, 2663, 2989 |
| TauI | GCSGC | 1 cut(s) | 3038 |
| TscAI | CASTG | 5 cut(s) | 1646, 2286, 2323, 2563, 3225 |
| TseFI | GTSAC | 1 cut(s) | 2843 |
| TseI | GCWGC | 5 cut(s) | 181, 729, 790, 2106, 2634 |
| Tsp45I | GTSAC | 1 cut(s) | 2843 |
| TspGWI | ACGGA | 3 cut(s) | 2260, 2276, 2669 |
| TspMI | CCCGGG | 1 cut(s) | 6 |
| TspRI | CASTG | 5 cut(s) | 1646, 2286, 2323, 2563, 3225 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2875 |
| VneI | GTGCAC | 1 cut(s) | 2319 |
| VpaK11BI | GGWCC | 1 cut(s) | 1914 |
| XagI | CCTNNNNNAGG | 3 cut(s) | 565, 1709, 3056 |
| XceI | RCATGY | 3 cut(s) | 1332, 1568, 3189 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2334 |
| XhoI | CTCGAG | 1 cut(s) | 1943 |
| XmaI | CCCGGG | 1 cut(s) | 6 |
| XmiI | GTMKAC | 2 cut(s) | 1446, 1777 |
| XmnI | GAANNNNTTC | 3 cut(s) | 583, 2153, 3283 |
| ZrmI | AGTACT | 2 cut(s) | 2511, 2579 |
| Zsp2I | ATGCAT | 1 cut(s) | 1467 |