Protein DA1
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1983 |
| AatII | GACGTC | 1 cut(s) | 1868 |
| AccBSI | CCGCTC | 1 cut(s) | 446 |
| AccI | GTMKAC | 1 cut(s) | 312 |
| AccII | CGCG | 1 cut(s) | 1812 |
| AciI | CCGC | 4 cut(s) | 136, 446, 861, 1167 |
| AclI | AACGTT | 1 cut(s) | 374 |
| AclWI | GGATC | 2 cut(s) | 117, 338 |
| AcoI | YGGCCR | 2 cut(s) | 951, 1627 |
| AcsI | RAATTY | 7 cut(s) | 318, 720, 1259, 1385, 1480, 1725, 2062 |
| AcuI | CTGAAG | 4 cut(s) | 629, 1095, 1128, 1310 |
| AcvI | CACGTG | 1 cut(s) | 64 |
| AcyI | GRCGYC | 1 cut(s) | 1865 |
| AdeI | CACNNNGTG | 2 cut(s) | 270, 1451 |
| AfaI | GTAC | 3 cut(s) | 181, 432, 1704 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 2043 |
| AflIII | ACRYGT | 1 cut(s) | 63 |
| AgsI | TTSAA | 9 cut(s) | 42, 173, 288, 391, 527, 1226, 1264, 1723, 1730 |
| AjiI | CACGTC | 2 cut(s) | 30, 1069 |
| AjnI | CCWGG | 4 cut(s) | 266, 673, 1591, 1781 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 241, 273, 1363, 1395 |
| Alw21I | GWGCWC | 3 cut(s) | 1053, 1324, 2169 |
| Alw26I | GTCTC | 3 cut(s) | 1092, 1149, 1832 |
| AlwI | GGATC | 2 cut(s) | 117, 338 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1673 |
| AoxI | GGCC | 5 cut(s) | 671, 951, 1627, 1788, 1871 |
| ApeKI | GCWGC | 3 cut(s) | 12, 1278, 1832 |
| ApoI | RAATTY | 7 cut(s) | 318, 720, 1259, 1385, 1480, 1725, 2062 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1080 |
| AspA2I | CCTAGG | 1 cut(s) | 1916 |
| AspS9I | GGNCC | 3 cut(s) | 671, 1163, 1871 |
| AsuC2I | CCSGG | 1 cut(s) | 1652 |
| AsuHPI | GGTGA | 4 cut(s) | 237, 1936, 2105, 2186 |
| AsuII | TTCGAA | 5 cut(s) | 485, 1382, 1744, 1990, 2203 |
| AsuNHI | GCTAGC | 1 cut(s) | 1828 |
| AvaII | GGWCC | 1 cut(s) | 1163 |
| AvrII | CCTAGG | 1 cut(s) | 1916 |
| BanII | GRGCYC | 2 cut(s) | 1053, 2003 |
| BbrPI | CACGTG | 1 cut(s) | 64 |
| Bbv12I | GWGCWC | 3 cut(s) | 1053, 1324, 2169 |
| BbvI | GCAGC | 3 cut(s) | 24, 1265, 1844 |
| BccI | CCATC | 8 cut(s) | 239, 735, 1154, 1289, 1481, 1547, 1619, 1841 |
| BciT130I | CCWGG | 4 cut(s) | 268, 675, 1593, 1783 |
| BciVI | GTATCC | 2 cut(s) | 558, 1893 |
| BcnI | CCSGG | 1 cut(s) | 1652 |
| BcoDI | GTCTC | 3 cut(s) | 1092, 1149, 1832 |
| BfaI | CTAG | 6 cut(s) | 569, 702, 1503, 1563, 1829, 1917 |
| BfmI | CTRYAG | 1 cut(s) | 2226 |
| BfuI | GTATCC | 2 cut(s) | 558, 1893 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1787 |
| BglII | AGATCT | 1 cut(s) | 1114 |
| BisI | GCNGC | 4 cut(s) | 13, 447, 1279, 1833 |
| BlnI | CCTAGG | 1 cut(s) | 1916 |
| BlsI | GCNGC | 4 cut(s) | 14, 448, 1280, 1834 |
| Bme1390I | CCNGG | 5 cut(s) | 268, 675, 1593, 1652, 1783 |
| Bme18I | GGWCC | 1 cut(s) | 1163 |
| BmgBI | CACGTC | 2 cut(s) | 30, 1069 |
| BmgT120I | GGNCC | 3 cut(s) | 671, 1163, 1871 |
| BmiI | GGNNCC | 6 cut(s) | 574, 672, 865, 1165, 1558, 1872 |
| BmrFI | CCNGG | 5 cut(s) | 268, 675, 1593, 1652, 1783 |
| BmsI | GCATC | 2 cut(s) | 910, 1342 |
| BmtI | GCTAGC | 1 cut(s) | 1832 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 433, 465 |
| BpmI | CTGGAG | 1 cut(s) | 460 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2149 |
| Bpu14I | TTCGAA | 5 cut(s) | 485, 1382, 1744, 1990, 2203 |
| BpuEI | CTTGAG | 3 cut(s) | 91, 844, 1866 |
| BpuMI | CCSGG | 1 cut(s) | 1652 |
| Bsa29I | ATCGAT | 1 cut(s) | 1758 |
| BsaAI | YACGTR | 1 cut(s) | 64 |
| BsaBI | GATNNNNATC | 3 cut(s) | 342, 924, 1083 |
| BsaHI | GRCGYC | 1 cut(s) | 1865 |
| BsaJI | CCNNGG | 4 cut(s) | 50, 781, 1215, 1916 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 19, 49, 175, 205 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 2043 |
| Bse118I | RCCGGY | 1 cut(s) | 1629 |
| Bse1I | ACTGG | 1 cut(s) | 971 |
| Bse3DI | GCAATG | 2 cut(s) | 563, 1899 |
| Bse8I | GATNNNNATC | 3 cut(s) | 342, 924, 1083 |
| BseBI | CCWGG | 4 cut(s) | 268, 675, 1593, 1783 |
| BseCI | ATCGAT | 1 cut(s) | 1758 |
| BseDI | CCNNGG | 4 cut(s) | 50, 781, 1215, 1916 |
| BseGI | GGATG | 4 cut(s) | 856, 1084, 1333, 1405 |
| BseJI | GATNNNNATC | 3 cut(s) | 342, 924, 1083 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 2043 |
| BseMI | GCAATG | 2 cut(s) | 563, 1899 |
| BseMII | CTCAG | 3 cut(s) | 194, 1827, 1895 |
| BseNI | ACTGG | 1 cut(s) | 971 |
| BseRI | GAGGAG | 1 cut(s) | 1242 |
| BseXI | GCAGC | 3 cut(s) | 24, 1265, 1844 |
| Bsh1236I | CGCG | 1 cut(s) | 1812 |
| BshFI | GGCC | 5 cut(s) | 673, 953, 1629, 1790, 1873 |
| BshVI | ATCGAT | 1 cut(s) | 1758 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1053, 1324, 2169 |
| BsiSI | CCGG | 3 cut(s) | 954, 1630, 1651 |
| BslFI | GGGAC | 3 cut(s) | 170, 1521, 1613 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 2043 |
| BsmAI | GTCTC | 3 cut(s) | 1092, 1149, 1832 |
| BsmFI | GGGAC | 3 cut(s) | 170, 1521, 1613 |
| BsmI | GAATGC | 1 cut(s) | 1685 |
| BsnI | GGCC | 5 cut(s) | 673, 953, 1629, 1790, 1873 |
| Bsp119I | TTCGAA | 5 cut(s) | 485, 1382, 1744, 1990, 2203 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1053, 1324, 2003, 2169 |
| Bsp143I | GATC | 8 cut(s) | 109, 343, 631, 1020, 1114, 1363, 1755, 1909 |
| Bsp19I | CCATGG | 1 cut(s) | 50 |
| BspACI | CCGC | 4 cut(s) | 136, 446, 861, 1167 |
| BspANI | GGCC | 5 cut(s) | 673, 953, 1629, 1790, 1873 |
| BspCNI | CTCAG | 3 cut(s) | 195, 1828, 1896 |
| BspDI | ATCGAT | 1 cut(s) | 1758 |
| BspFNI | CGCG | 1 cut(s) | 1812 |
| BspLI | GGNNCC | 6 cut(s) | 574, 672, 865, 1165, 1558, 1872 |
| BspOI | GCTAGC | 1 cut(s) | 1832 |
| BspPI | GGATC | 2 cut(s) | 117, 338 |
| BspQI | GCTCTTC | 2 cut(s) | 1178, 1329 |
| BspT104I | TTCGAA | 5 cut(s) | 485, 1382, 1744, 1990, 2203 |
| BsrBI | CCGCTC | 1 cut(s) | 446 |
| BsrDI | GCAATG | 2 cut(s) | 563, 1899 |
| BsrFI | RCCGGY | 1 cut(s) | 1629 |
| BsrI | ACTGG | 1 cut(s) | 971 |
| BssAI | RCCGGY | 1 cut(s) | 1629 |
| BssECI | CCNNGG | 4 cut(s) | 50, 781, 1215, 1916 |
| BssMI | GATC | 8 cut(s) | 109, 343, 631, 1020, 1114, 1363, 1755, 1909 |
| BssNI | GRCGYC | 1 cut(s) | 1865 |
| BssT1I | CCWWGG | 3 cut(s) | 50, 1215, 1916 |
| Bst2UI | CCWGG | 4 cut(s) | 268, 675, 1593, 1783 |
| Bst6I | CTCTTC | 4 cut(s) | 13, 1090, 1178, 1329 |
| BstACI | GRCGYC | 1 cut(s) | 1865 |
| BstBAI | YACGTR | 1 cut(s) | 64 |
| BstBI | TTCGAA | 5 cut(s) | 485, 1382, 1744, 1990, 2203 |
| BstC8I | GCNNGC | 1 cut(s) | 1830 |
| BstDEI | CTNAG | 7 cut(s) | 203, 274, 1054, 1836, 1904, 2149, 2180 |
| BstDSI | CCRYGG | 2 cut(s) | 50, 781 |
| BstF5I | GGATG | 4 cut(s) | 856, 1084, 1333, 1405 |
| BstFNI | CGCG | 1 cut(s) | 1812 |
| BstKTI | GATC | 8 cut(s) | 112, 346, 634, 1023, 1117, 1366, 1758, 1912 |
| BstMAI | GTCTC | 3 cut(s) | 1092, 1149, 1832 |
| BstMBI | GATC | 8 cut(s) | 109, 343, 631, 1020, 1114, 1363, 1755, 1909 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1787 |
| BstNI | CCWGG | 4 cut(s) | 268, 675, 1593, 1783 |
| BstSCI | CCNGG | 5 cut(s) | 266, 673, 1591, 1650, 1781 |
| BstSFI | CTRYAG | 1 cut(s) | 2226 |
| BstUI | CGCG | 1 cut(s) | 1812 |
| BstV1I | GCAGC | 3 cut(s) | 24, 1265, 1844 |
| BstX2I | RGATCY | 2 cut(s) | 343, 1114 |
| BstYI | RGATCY | 2 cut(s) | 343, 1114 |
| Bsu15I | ATCGAT | 1 cut(s) | 1758 |
| BsuI | GTATCC | 2 cut(s) | 558, 1893 |
| BsuRI | GGCC | 5 cut(s) | 673, 953, 1629, 1790, 1873 |
| BsuTUI | ATCGAT | 1 cut(s) | 1758 |
| BtgI | CCRYGG | 2 cut(s) | 50, 781 |
| BtrI | CACGTC | 2 cut(s) | 30, 1069 |
| BtsCI | GGATG | 4 cut(s) | 856, 1084, 1333, 1405 |
| BtsI | GCAGTG | 1 cut(s) | 2169 |
| BtsIMutI | CAGTG | 2 cut(s) | 1334, 2169 |
| Cac8I | GCNNGC | 1 cut(s) | 1830 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1673 |
| Cfr10I | RCCGGY | 1 cut(s) | 1629 |
| Cfr13I | GGNCC | 3 cut(s) | 671, 1163, 1871 |
| ClaI | ATCGAT | 1 cut(s) | 1758 |
| CseI | GACGC | 1 cut(s) | 1424 |
| CsiI | ACCWGGT | 1 cut(s) | 266 |
| Csp6I | GTAC | 3 cut(s) | 180, 431, 1703 |
| CviAII | CATG | 7 cut(s) | 51, 1243, 1355, 1397, 1429, 1962, 2174 |
| CviQI | GTAC | 3 cut(s) | 180, 431, 1703 |
| DdeI | CTNAG | 7 cut(s) | 203, 274, 1054, 1836, 1904, 2149, 2180 |
| DpnI | GATC | 8 cut(s) | 111, 345, 633, 1022, 1116, 1365, 1757, 1911 |
| DpnII | GATC | 8 cut(s) | 109, 343, 631, 1020, 1114, 1363, 1755, 1909 |
| DraI | TTTAAA | 1 cut(s) | 412 |
| DraIII | CACNNNGTG | 2 cut(s) | 270, 1451 |
| EaeI | YGGCCR | 2 cut(s) | 951, 1627 |
| Eam1104I | CTCTTC | 4 cut(s) | 13, 1090, 1178, 1329 |
| EarI | CTCTTC | 4 cut(s) | 13, 1090, 1178, 1329 |
| Ecl136II | GAGCTC | 1 cut(s) | 1051 |
| Eco130I | CCWWGG | 3 cut(s) | 50, 1215, 1916 |
| Eco24I | GRGCYC | 2 cut(s) | 1053, 2003 |
| Eco32I | GATATC | 1 cut(s) | 1610 |
| Eco47I | GGWCC | 1 cut(s) | 1163 |
| Eco53kI | GAGCTC | 1 cut(s) | 1051 |
| Eco57I | CTGAAG | 4 cut(s) | 629, 1095, 1128, 1310 |
| Eco72I | CACGTG | 1 cut(s) | 64 |
| EcoICRI | GAGCTC | 1 cut(s) | 1051 |
| EcoO109I | RGGNCCY | 2 cut(s) | 671, 1871 |
| EcoRI | GAATTC | 1 cut(s) | 2062 |
| EcoRII | CCWGG | 4 cut(s) | 266, 673, 1591, 1781 |
| EcoRV | GATATC | 1 cut(s) | 1610 |
| EcoT14I | CCWWGG | 3 cut(s) | 50, 1215, 1916 |
| EcoT38I | GRGCYC | 2 cut(s) | 1053, 2003 |
| ErhI | CCWWGG | 3 cut(s) | 50, 1215, 1916 |
| FaeI | CATG | 7 cut(s) | 54, 1246, 1358, 1400, 1432, 1965, 2177 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1101, 1133 |
| FaqI | GGGAC | 3 cut(s) | 170, 1521, 1613 |
| FatI | CATG | 7 cut(s) | 50, 1242, 1354, 1396, 1428, 1961, 2173 |
| FauI | CCCGC | 1 cut(s) | 1174 |
| FauNDI | CATATG | 1 cut(s) | 2040 |
| FblI | GTMKAC | 1 cut(s) | 312 |
| Fnu4HI | GCNGC | 4 cut(s) | 13, 447, 1279, 1833 |
| FokI | GGATG | 4 cut(s) | 863, 1071, 1320, 1392 |
| FriOI | GRGCYC | 2 cut(s) | 1053, 2003 |
| Fsp4HI | GCNGC | 4 cut(s) | 13, 447, 1279, 1833 |
| FspBI | CTAG | 6 cut(s) | 569, 702, 1503, 1563, 1829, 1917 |
| GluI | GCNGC | 4 cut(s) | 13, 447, 1279, 1833 |
| GsuI | CTGGAG | 1 cut(s) | 460 |
| HaeIII | GGCC | 5 cut(s) | 673, 953, 1629, 1790, 1873 |
| HapII | CCGG | 3 cut(s) | 954, 1630, 1651 |
| HgaI | GACGC | 1 cut(s) | 1424 |
| Hin1I | GRCGYC | 1 cut(s) | 1865 |
| Hin1II | CATG | 7 cut(s) | 54, 1246, 1358, 1400, 1432, 1965, 2177 |
| HincII | GTYRAC | 1 cut(s) | 1935 |
| HindII | GTYRAC | 1 cut(s) | 1935 |
| HindIII | AAGCTT | 2 cut(s) | 2087, 2215 |
| HpaII | CCGG | 3 cut(s) | 954, 1630, 1651 |
| HphI | GGTGA | 4 cut(s) | 237, 1936, 2105, 2186 |
| Hpy166II | GTNNAC | 3 cut(s) | 313, 1240, 1935 |
| Hpy188I | TCNGA | 7 cut(s) | 352, 359, 593, 764, 1486, 2074, 2128 |
| Hpy188III | TCNNGA | 6 cut(s) | 70, 635, 823, 1547, 1643, 1730 |
| Hpy8I | GTNNAC | 3 cut(s) | 313, 1240, 1935 |
| Hpy99I | CGWCG | 2 cut(s) | 1440, 1870 |
| HpyCH4IV | ACGT | 6 cut(s) | 29, 63, 309, 374, 1068, 1865 |
| HpyCH4V | TGCA | 6 cut(s) | 303, 380, 776, 891, 1132, 1281 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1787 |
| HpyF3I | CTNAG | 7 cut(s) | 203, 274, 1054, 1836, 1904, 2149, 2180 |
| HpySE526I | ACGT | 6 cut(s) | 29, 63, 309, 374, 1068, 1865 |
| Hsp92I | GRCGYC | 1 cut(s) | 1865 |
| Hsp92II | CATG | 7 cut(s) | 54, 1246, 1358, 1400, 1432, 1965, 2177 |
| Kzo9I | GATC | 8 cut(s) | 109, 343, 631, 1020, 1114, 1363, 1755, 1909 |
| LguI | GCTCTTC | 2 cut(s) | 1178, 1329 |
| LmnI | GCTCC | 4 cut(s) | 40, 863, 981, 1432 |
| Lsp1109I | GCAGC | 3 cut(s) | 24, 1265, 1844 |
| LweI | GCATC | 2 cut(s) | 910, 1342 |
| MabI | ACCWGGT | 1 cut(s) | 266 |
| MaeI | CTAG | 6 cut(s) | 569, 702, 1503, 1563, 1829, 1917 |
| MaeII | ACGT | 6 cut(s) | 29, 63, 309, 374, 1068, 1865 |
| MaeIII | GTNAC | 6 cut(s) | 536, 559, 1632, 1817, 1885, 1924 |
| MalI | GATC | 8 cut(s) | 111, 345, 633, 1022, 1116, 1365, 1757, 1911 |
| MbiI | CCGCTC | 1 cut(s) | 446 |
| MboI | GATC | 8 cut(s) | 109, 343, 631, 1020, 1114, 1363, 1755, 1909 |
| MfeI | CAATTG | 1 cut(s) | 1823 |
| MflI | RGATCY | 2 cut(s) | 343, 1114 |
| MhlI | GDGCHC | 4 cut(s) | 1053, 1324, 2003, 2169 |
| MlyI | GAGTC | 2 cut(s) | 1151, 1508 |
| MmeI | TCCRAC | 1 cut(s) | 571 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1080 |
| MslI | CAYNNNNRTG | 4 cut(s) | 117, 735, 1137, 1359 |
| MspA1I | CMGCKG | 1 cut(s) | 1835 |
| MspI | CCGG | 3 cut(s) | 954, 1630, 1651 |
| MspR9I | CCNGG | 5 cut(s) | 268, 675, 1593, 1652, 1783 |
| MunI | CAATTG | 1 cut(s) | 1823 |
| Mva1269I | GAATGC | 1 cut(s) | 1685 |
| MvaI | CCWGG | 4 cut(s) | 268, 675, 1593, 1783 |
| MvnI | CGCG | 1 cut(s) | 1812 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1787 |
| NciI | CCSGG | 1 cut(s) | 1652 |
| NcoI | CCATGG | 1 cut(s) | 50 |
| NdeI | CATATG | 1 cut(s) | 2040 |
| NdeII | GATC | 8 cut(s) | 109, 343, 631, 1020, 1114, 1363, 1755, 1909 |
| NheI | GCTAGC | 1 cut(s) | 1828 |
| NlaIII | CATG | 7 cut(s) | 54, 1246, 1358, 1400, 1432, 1965, 2177 |
| NlaIV | GGNNCC | 6 cut(s) | 574, 672, 865, 1165, 1558, 1872 |
| NmuCI | GTSAC | 4 cut(s) | 559, 1632, 1817, 1924 |
| NspV | TTCGAA | 5 cut(s) | 485, 1382, 1744, 1990, 2203 |
| PciSI | GCTCTTC | 2 cut(s) | 1178, 1329 |
| PctI | GAATGC | 1 cut(s) | 1685 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1080 |
| PfeI | GAWTC | 8 cut(s) | 23, 218, 925, 987, 1247, 1379, 1402, 1655 |
| PflFI | GACNNNGTC | 1 cut(s) | 1930 |
| PkrI | GCNGC | 4 cut(s) | 14, 448, 1280, 1834 |
| PleI | GAGTC | 2 cut(s) | 1150, 1507 |
| PmaCI | CACGTG | 1 cut(s) | 64 |
| PmlI | CACGTG | 1 cut(s) | 64 |
| PpsI | GAGTC | 2 cut(s) | 1150, 1507 |
| Ppu21I | YACGTR | 1 cut(s) | 64 |
| PsiI | TTATAA | 1 cut(s) | 1983 |
| Psp124BI | GAGCTC | 1 cut(s) | 1053 |
| Psp1406I | AACGTT | 1 cut(s) | 374 |
| Psp6I | CCWGG | 4 cut(s) | 266, 673, 1591, 1781 |
| PspCI | CACGTG | 1 cut(s) | 64 |
| PspGI | CCWGG | 4 cut(s) | 266, 673, 1591, 1781 |
| PspN4I | GGNNCC | 6 cut(s) | 574, 672, 865, 1165, 1558, 1872 |
| PspPI | GGNCC | 3 cut(s) | 671, 1163, 1871 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1673 |
| PsuI | RGATCY | 2 cut(s) | 343, 1114 |
| PsyI | GACNNNGTC | 1 cut(s) | 1930 |
| PvuII | CAGCTG | 1 cut(s) | 1835 |
| RsaI | GTAC | 3 cut(s) | 181, 432, 1704 |
| RsaNI | GTAC | 3 cut(s) | 180, 431, 1703 |
| RseI | CAYNNNNRTG | 4 cut(s) | 117, 735, 1137, 1359 |
| SacI | GAGCTC | 1 cut(s) | 1053 |
| SapI | GCTCTTC | 2 cut(s) | 1178, 1329 |
| SatI | GCNGC | 4 cut(s) | 13, 447, 1279, 1833 |
| Sau3AI | GATC | 8 cut(s) | 109, 343, 631, 1020, 1114, 1363, 1755, 1909 |
| Sau96I | GGNCC | 3 cut(s) | 671, 1163, 1871 |
| SchI | GAGTC | 2 cut(s) | 1151, 1508 |
| ScrFI | CCNGG | 5 cut(s) | 268, 675, 1593, 1652, 1783 |
| SduI | GDGCHC | 4 cut(s) | 1053, 1324, 2003, 2169 |
| SexAI | ACCWGGT | 1 cut(s) | 266 |
| SfaNI | GCATC | 2 cut(s) | 910, 1342 |
| SfcI | CTRYAG | 1 cut(s) | 2226 |
| SfuI | TTCGAA | 5 cut(s) | 485, 1382, 1744, 1990, 2203 |
| SinI | GGWCC | 1 cut(s) | 1163 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 117, 735, 1137, 1359 |
| SmlI | CTYRAG | 3 cut(s) | 70, 823, 1881 |
| SmoI | CTYRAG | 3 cut(s) | 70, 823, 1881 |
| SsiI | CCGC | 4 cut(s) | 136, 446, 861, 1167 |
| SspI | AATATT | 3 cut(s) | 1291, 1741, 2099 |
| SspMI | CTAG | 6 cut(s) | 569, 702, 1503, 1563, 1829, 1917 |
| SstI | GAGCTC | 1 cut(s) | 1053 |
| StyD4I | CCNGG | 5 cut(s) | 266, 673, 1591, 1650, 1781 |
| StyI | CCWWGG | 3 cut(s) | 50, 1215, 1916 |
| TaiI | ACGT | 6 cut(s) | 32, 66, 312, 377, 1071, 1868 |
| TaqI | TCGA | 9 cut(s) | 213, 485, 1023, 1181, 1382, 1744, 1758, 1990, 2203 |
| TatI | WGTACW | 1 cut(s) | 1702 |
| TauI | GCSGC | 1 cut(s) | 449 |
| TfiI | GAWTC | 8 cut(s) | 23, 218, 925, 987, 1247, 1379, 1402, 1655 |
| TscAI | CASTG | 2 cut(s) | 1334, 2169 |
| TseFI | GTSAC | 4 cut(s) | 559, 1632, 1817, 1924 |
| TseI | GCWGC | 3 cut(s) | 12, 1278, 1832 |
| Tsp45I | GTSAC | 4 cut(s) | 559, 1632, 1817, 1924 |
| TspDTI | ATGAA | 7 cut(s) | 180, 646, 782, 845, 855, 1073, 2075 |
| TspGWI | ACGGA | 2 cut(s) | 122, 1300 |
| TspRI | CASTG | 2 cut(s) | 1334, 2169 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1930 |
| VpaK11BI | GGWCC | 1 cut(s) | 1163 |
| XapI | RAATTY | 7 cut(s) | 318, 720, 1259, 1385, 1480, 1725, 2062 |
| XmaJI | CCTAGG | 1 cut(s) | 1916 |
| XmiI | GTMKAC | 1 cut(s) | 312 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1080 |
| XspI | CTAG | 6 cut(s) | 569, 702, 1503, 1563, 1829, 1917 |
| ZraI | GACGTC | 1 cut(s) | 1866 |