TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_14 | PF23598 | 2 - 100 | 8.3e-12 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 20 - 106 | 3.4e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 92 - 177 | 1e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 98 - 171 | 4.8e-08 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 247 - 369 | 4.2e-11 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 253 - 292 | 6.8e-06 | Leucine rich repeat |
| C-JID | PF20160 | 392 - 533 | 2.1e-18 | C-JID domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 918 |
| Acc36I | ACCTGC | 1 cut(s) | 1619 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1213 |
| AccI | GTMKAC | 1 cut(s) | 1405 |
| AciI | CCGC | 1 cut(s) | 1313 |
| AclWI | GGATC | 1 cut(s) | 1425 |
| AcoI | YGGCCR | 1 cut(s) | 1350 |
| AcsI | RAATTY | 2 cut(s) | 813, 1502 |
| AcuI | CTGAAG | 2 cut(s) | 1122, 1478 |
| AfaI | GTAC | 3 cut(s) | 51, 1199, 1615 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1213, 1318, 1531 |
| AflII | CTTAAG | 1 cut(s) | 1115 |
| AgsI | TTSAA | 9 cut(s) | 203, 416, 628, 697, 917, 950, 1057, 1124, 1502 |
| AjnI | CCWGG | 4 cut(s) | 1174, 1243, 1277, 1465 |
| AleI | CACNNNNGTG | 1 cut(s) | 1209 |
| Alw26I | GTCTC | 1 cut(s) | 284 |
| AlwI | GGATC | 1 cut(s) | 1425 |
| AoxI | GGCC | 2 cut(s) | 337, 1350 |
| ApeKI | GCWGC | 2 cut(s) | 939, 1601 |
| ApoI | RAATTY | 2 cut(s) | 813, 1502 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 709, 741 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 921 |
| AspS9I | GGNCC | 3 cut(s) | 337, 1576, 1694 |
| AsuHPI | GGTGA | 1 cut(s) | 1196 |
| AvaII | GGWCC | 2 cut(s) | 1576, 1694 |
| BalI | TGGCCA | 1 cut(s) | 1352 |
| BauI | CACGAG | 1 cut(s) | 29 |
| BbsI | GAAGAC | 4 cut(s) | 242, 455, 914, 1212 |
| BbvI | GCAGC | 2 cut(s) | 926, 1613 |
| BccI | CCATC | 2 cut(s) | 616, 1342 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 10, 44, 726, 760 |
| BciT130I | CCWGG | 4 cut(s) | 1176, 1245, 1279, 1467 |
| BcoDI | GTCTC | 1 cut(s) | 284 |
| BfaI | CTAG | 3 cut(s) | 1382, 1608, 1698 |
| BfmI | CTRYAG | 1 cut(s) | 1230 |
| BfrI | CTTAAG | 1 cut(s) | 1115 |
| BfuAI | ACCTGC | 1 cut(s) | 1619 |
| BglII | AGATCT | 2 cut(s) | 286, 499 |
| BisI | GCNGC | 2 cut(s) | 940, 1602 |
| BlpI | GCTNAGC | 1 cut(s) | 1087 |
| BlsI | GCNGC | 2 cut(s) | 941, 1603 |
| BmcAI | AGTACT | 1 cut(s) | 1615 |
| Bme1390I | CCNGG | 4 cut(s) | 1176, 1245, 1279, 1467 |
| Bme18I | GGWCC | 2 cut(s) | 1576, 1694 |
| BmgT120I | GGNCC | 3 cut(s) | 337, 1576, 1694 |
| BmiI | GGNNCC | 1 cut(s) | 1577 |
| BmrFI | CCNGG | 4 cut(s) | 1176, 1245, 1279, 1467 |
| BmrI | ACTGGG | 1 cut(s) | 813 |
| BmsI | GCATC | 5 cut(s) | 355, 821, 903, 1588, 1613 |
| BmuI | ACTGGG | 1 cut(s) | 813 |
| BoxI | GACNNNNGTC | 1 cut(s) | 123 |
| BpiI | GAAGAC | 4 cut(s) | 242, 455, 914, 1212 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1087 |
| BpuEI | CTTGAG | 3 cut(s) | 244, 457, 1697 |
| BsaAI | YACGTR | 1 cut(s) | 53 |
| BsaBI | GATNNNNATC | 3 cut(s) | 291, 504, 835 |
| BsaJI | CCNNGG | 2 cut(s) | 1365, 1466 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1213, 1318, 1531 |
| Bse1I | ACTGG | 2 cut(s) | 789, 819 |
| Bse3DI | GCAATG | 1 cut(s) | 1097 |
| Bse8I | GATNNNNATC | 3 cut(s) | 291, 504, 835 |
| BseBI | CCWGG | 4 cut(s) | 1176, 1245, 1279, 1467 |
| BseDI | CCNNGG | 2 cut(s) | 1365, 1466 |
| BseGI | GGATG | 7 cut(s) | 608, 662, 836, 1240, 1327, 1549, 1654 |
| BseJI | GATNNNNATC | 3 cut(s) | 291, 504, 835 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1213, 1318, 1531 |
| BseMI | GCAATG | 1 cut(s) | 1097 |
| BseMII | CTCAG | 2 cut(s) | 879, 1101 |
| BseNI | ACTGG | 2 cut(s) | 789, 819 |
| BseRI | GAGGAG | 1 cut(s) | 1289 |
| BseXI | GCAGC | 2 cut(s) | 926, 1613 |
| BsgI | GTGCAG | 1 cut(s) | 1647 |
| BshFI | GGCC | 2 cut(s) | 339, 1352 |
| BsiSI | CCGG | 1 cut(s) | 734 |
| BslFI | GGGAC | 1 cut(s) | 388 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1213, 1318, 1531 |
| BsmAI | GTCTC | 1 cut(s) | 284 |
| BsmFI | GGGAC | 1 cut(s) | 388 |
| BsmI | GAATGC | 1 cut(s) | 769 |
| BsnI | GGCC | 2 cut(s) | 339, 1352 |
| Bsp143I | GATC | 4 cut(s) | 286, 499, 690, 1417 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1087 |
| BspACI | CCGC | 1 cut(s) | 1313 |
| BspANI | GGCC | 2 cut(s) | 339, 1352 |
| BspCNI | CTCAG | 2 cut(s) | 880, 1100 |
| BspLI | GGNNCC | 1 cut(s) | 1577 |
| BspMI | ACCTGC | 1 cut(s) | 1619 |
| BspPI | GGATC | 1 cut(s) | 1425 |
| BspTI | CTTAAG | 1 cut(s) | 1115 |
| BsrDI | GCAATG | 1 cut(s) | 1097 |
| BsrI | ACTGG | 2 cut(s) | 789, 819 |
| BssECI | CCNNGG | 2 cut(s) | 1365, 1466 |
| BssMI | GATC | 4 cut(s) | 286, 499, 690, 1417 |
| BssNAI | GTATAC | 1 cut(s) | 1406 |
| BssSI | CACGAG | 1 cut(s) | 29 |
| BssT1I | CCWWGG | 1 cut(s) | 1365 |
| Bst1107I | GTATAC | 1 cut(s) | 1406 |
| Bst2BI | CACGAG | 1 cut(s) | 29 |
| Bst2UI | CCWGG | 4 cut(s) | 1176, 1245, 1279, 1467 |
| Bst4CI | ACNGT | 2 cut(s) | 1231, 1445 |
| Bst6I | CTCTTC | 2 cut(s) | 351, 1632 |
| BstAFI | CTTAAG | 1 cut(s) | 1115 |
| BstBAI | YACGTR | 1 cut(s) | 53 |
| BstC8I | GCNNGC | 4 cut(s) | 43, 197, 410, 944 |
| BstDEI | CTNAG | 4 cut(s) | 5, 791, 888, 1087 |
| BstF5I | GGATG | 7 cut(s) | 608, 662, 836, 1240, 1327, 1549, 1654 |
| BstKTI | GATC | 4 cut(s) | 289, 502, 693, 1420 |
| BstMAI | GTCTC | 1 cut(s) | 284 |
| BstMBI | GATC | 4 cut(s) | 286, 499, 690, 1417 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 192, 1083, 1338 |
| BstNI | CCWGG | 4 cut(s) | 1176, 1245, 1279, 1467 |
| BstNSI | RCATGY | 2 cut(s) | 199, 412 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 123 |
| BstSCI | CCNGG | 4 cut(s) | 1174, 1243, 1277, 1465 |
| BstSFI | CTRYAG | 1 cut(s) | 1230 |
| BstV1I | GCAGC | 2 cut(s) | 926, 1613 |
| BstV2I | GAAGAC | 4 cut(s) | 242, 455, 914, 1212 |
| BstX2I | RGATCY | 2 cut(s) | 286, 499 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1712 |
| BstYI | RGATCY | 2 cut(s) | 286, 499 |
| BstZ17I | GTATAC | 1 cut(s) | 1406 |
| BsuRI | GGCC | 2 cut(s) | 339, 1352 |
| BtsCI | GGATG | 7 cut(s) | 608, 662, 836, 1240, 1327, 1549, 1654 |
| BtsI | GCAGTG | 2 cut(s) | 52, 478 |
| BtsIMutI | CAGTG | 3 cut(s) | 52, 478, 826 |
| BveI | ACCTGC | 1 cut(s) | 1619 |
| Cac8I | GCNNGC | 4 cut(s) | 43, 197, 410, 944 |
| Cfr13I | GGNCC | 3 cut(s) | 337, 1576, 1694 |
| Csp6I | GTAC | 3 cut(s) | 50, 1198, 1614 |
| CviAII | CATG | 6 cut(s) | 196, 409, 681, 936, 978, 1526 |
| CviQI | GTAC | 3 cut(s) | 50, 1198, 1614 |
| DdeI | CTNAG | 4 cut(s) | 5, 791, 888, 1087 |
| DpnI | GATC | 4 cut(s) | 288, 501, 692, 1419 |
| DpnII | GATC | 4 cut(s) | 286, 499, 690, 1417 |
| DraI | TTTAAA | 3 cut(s) | 12, 1462, 1669 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 918 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 918 |
| EaeI | YGGCCR | 1 cut(s) | 1350 |
| Eam1104I | CTCTTC | 2 cut(s) | 351, 1632 |
| EarI | CTCTTC | 2 cut(s) | 351, 1632 |
| Eco130I | CCWWGG | 1 cut(s) | 1365 |
| Eco32I | GATATC | 1 cut(s) | 1480 |
| Eco47I | GGWCC | 2 cut(s) | 1576, 1694 |
| Eco57I | CTGAAG | 2 cut(s) | 1122, 1478 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1694 |
| EcoRI | GAATTC | 1 cut(s) | 1502 |
| EcoRII | CCWGG | 4 cut(s) | 1174, 1243, 1277, 1465 |
| EcoRV | GATATC | 1 cut(s) | 1480 |
| EcoT14I | CCWWGG | 1 cut(s) | 1365 |
| ErhI | CCWWGG | 1 cut(s) | 1365 |
| FaeI | CATG | 6 cut(s) | 199, 412, 684, 939, 981, 1529 |
| FaqI | GGGAC | 1 cut(s) | 388 |
| FatI | CATG | 6 cut(s) | 195, 408, 680, 935, 977, 1525 |
| FauI | CCCGC | 1 cut(s) | 1320 |
| FblI | GTMKAC | 1 cut(s) | 1405 |
| Fnu4HI | GCNGC | 2 cut(s) | 940, 1602 |
| FokI | GGATG | 7 cut(s) | 595, 669, 843, 1227, 1334, 1556, 1641 |
| Fsp4HI | GCNGC | 2 cut(s) | 940, 1602 |
| FspBI | CTAG | 3 cut(s) | 1382, 1608, 1698 |
| GluI | GCNGC | 2 cut(s) | 940, 1602 |
| HaeIII | GGCC | 2 cut(s) | 339, 1352 |
| HapII | CCGG | 1 cut(s) | 734 |
| Hin1II | CATG | 6 cut(s) | 199, 412, 684, 939, 981, 1529 |
| HindIII | AAGCTT | 5 cut(s) | 98, 311, 524, 944, 951 |
| HinfI | GANTC | 5 cut(s) | 25, 267, 932, 1296, 1361 |
| HpaII | CCGG | 1 cut(s) | 734 |
| HphI | GGTGA | 1 cut(s) | 1196 |
| Hpy166II | GTNNAC | 6 cut(s) | 50, 236, 985, 1066, 1406, 1439 |
| Hpy188I | TCNGA | 2 cut(s) | 541, 811 |
| Hpy188III | TCNNGA | 2 cut(s) | 68, 1634 |
| Hpy8I | GTNNAC | 6 cut(s) | 50, 236, 985, 1066, 1406, 1439 |
| HpyAV | CCTTC | 2 cut(s) | 410, 1261 |
| HpyCH4III | ACNGT | 2 cut(s) | 1231, 1445 |
| HpyCH4IV | ACGT | 2 cut(s) | 52, 1336 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 192, 1083, 1338 |
| HpyF3I | CTNAG | 4 cut(s) | 5, 791, 888, 1087 |
| HpySE526I | ACGT | 2 cut(s) | 52, 1336 |
| Hsp92II | CATG | 6 cut(s) | 199, 412, 684, 939, 981, 1529 |
| Kzo9I | GATC | 4 cut(s) | 286, 499, 690, 1417 |
| LmnI | GCTCC | 1 cut(s) | 1177 |
| Lsp1109I | GCAGC | 2 cut(s) | 926, 1613 |
| LweI | GCATC | 5 cut(s) | 355, 821, 903, 1588, 1613 |
| MaeI | CTAG | 3 cut(s) | 1382, 1608, 1698 |
| MaeII | ACGT | 2 cut(s) | 52, 1336 |
| MaeIII | GTNAC | 4 cut(s) | 725, 794, 1256, 1700 |
| MalI | GATC | 4 cut(s) | 288, 501, 692, 1419 |
| MboI | GATC | 4 cut(s) | 286, 499, 690, 1417 |
| MfeI | CAATTG | 1 cut(s) | 189 |
| MflI | RGATCY | 2 cut(s) | 286, 499 |
| MlsI | TGGCCA | 1 cut(s) | 1352 |
| MluNI | TGGCCA | 1 cut(s) | 1352 |
| MlyI | GAGTC | 2 cut(s) | 276, 1290 |
| MmeI | TCCRAC | 2 cut(s) | 992, 1395 |
| Mox20I | TGGCCA | 1 cut(s) | 1352 |
| MroXI | GAANNNNTTC | 1 cut(s) | 921 |
| MscI | TGGCCA | 1 cut(s) | 1352 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1209, 1524 |
| Msp20I | TGGCCA | 1 cut(s) | 1352 |
| MspCI | CTTAAG | 1 cut(s) | 1115 |
| MspI | CCGG | 1 cut(s) | 734 |
| MspR9I | CCNGG | 4 cut(s) | 1176, 1245, 1279, 1467 |
| MunI | CAATTG | 1 cut(s) | 189 |
| Mva1269I | GAATGC | 1 cut(s) | 769 |
| MvaI | CCWGG | 4 cut(s) | 1176, 1245, 1279, 1467 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 192, 1083, 1338 |
| NdeII | GATC | 4 cut(s) | 286, 499, 690, 1417 |
| NlaIII | CATG | 6 cut(s) | 199, 412, 684, 939, 981, 1529 |
| NlaIV | GGNNCC | 1 cut(s) | 1577 |
| NmuCI | GTSAC | 3 cut(s) | 725, 794, 1700 |
| NspI | RCATGY | 2 cut(s) | 199, 412 |
| OliI | CACNNNNGTG | 1 cut(s) | 1209 |
| PaeI | GCATGC | 2 cut(s) | 199, 412 |
| PctI | GAATGC | 1 cut(s) | 769 |
| PdmI | GAANNNNTTC | 1 cut(s) | 921 |
| PfeI | GAWTC | 3 cut(s) | 25, 932, 1361 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1213 |
| PfoI | TCCNGGA | 1 cut(s) | 1174 |
| PkrI | GCNGC | 2 cut(s) | 941, 1603 |
| PleI | GAGTC | 2 cut(s) | 275, 1290 |
| PpsI | GAGTC | 2 cut(s) | 275, 1290 |
| Ppu21I | YACGTR | 1 cut(s) | 53 |
| PpuMI | RGGWCCY | 1 cut(s) | 1694 |
| PshAI | GACNNNNGTC | 1 cut(s) | 123 |
| Psp5II | RGGWCCY | 1 cut(s) | 1694 |
| Psp6I | CCWGG | 4 cut(s) | 1174, 1243, 1277, 1465 |
| PspGI | CCWGG | 4 cut(s) | 1174, 1243, 1277, 1465 |
| PspN4I | GGNNCC | 1 cut(s) | 1577 |
| PspPI | GGNCC | 3 cut(s) | 337, 1576, 1694 |
| PspPPI | RGGWCCY | 1 cut(s) | 1694 |
| PsuI | RGATCY | 2 cut(s) | 286, 499 |
| RsaI | GTAC | 3 cut(s) | 51, 1199, 1615 |
| RsaNI | GTAC | 3 cut(s) | 50, 1198, 1614 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1209, 1524 |
| SatI | GCNGC | 2 cut(s) | 940, 1602 |
| Sau3AI | GATC | 4 cut(s) | 286, 499, 690, 1417 |
| Sau96I | GGNCC | 3 cut(s) | 337, 1576, 1694 |
| ScaI | AGTACT | 1 cut(s) | 1615 |
| SchI | GAGTC | 2 cut(s) | 276, 1290 |
| ScrFI | CCNGG | 4 cut(s) | 1176, 1245, 1279, 1467 |
| SfaNI | GCATC | 5 cut(s) | 355, 821, 903, 1588, 1613 |
| SfcI | CTRYAG | 1 cut(s) | 1230 |
| SinI | GGWCC | 2 cut(s) | 1576, 1694 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1209, 1524 |
| SmlI | CTYRAG | 4 cut(s) | 223, 436, 1115, 1676 |
| SmoI | CTYRAG | 4 cut(s) | 223, 436, 1115, 1676 |
| SphI | GCATGC | 2 cut(s) | 199, 412 |
| SsiI | CCGC | 1 cut(s) | 1313 |
| SspI | AATATT | 1 cut(s) | 1454 |
| SspMI | CTAG | 3 cut(s) | 1382, 1608, 1698 |
| StyD4I | CCNGG | 4 cut(s) | 1174, 1243, 1277, 1465 |
| StyI | CCWWGG | 1 cut(s) | 1365 |
| TaaI | ACNGT | 2 cut(s) | 1231, 1445 |
| TaiI | ACGT | 2 cut(s) | 55, 1339 |
| TaqI | TCGA | 2 cut(s) | 69, 1223 |
| TatI | WGTACW | 1 cut(s) | 1613 |
| TfiI | GAWTC | 3 cut(s) | 25, 932, 1361 |
| TscAI | CASTG | 3 cut(s) | 52, 478, 826 |
| TseFI | GTSAC | 3 cut(s) | 725, 794, 1700 |
| TseI | GCWGC | 2 cut(s) | 939, 1601 |
| Tsp45I | GTSAC | 3 cut(s) | 725, 794, 1700 |
| TspDTI | ATGAA | 7 cut(s) | 762, 924, 966, 993, 1086, 1086, 1197 |
| TspGWI | ACGGA | 1 cut(s) | 1568 |
| TspRI | CASTG | 3 cut(s) | 52, 478, 826 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1213 |
| Vha464I | CTTAAG | 1 cut(s) | 1115 |
| VpaK11BI | GGWCC | 2 cut(s) | 1576, 1694 |
| XapI | RAATTY | 2 cut(s) | 813, 1502 |
| XceI | RCATGY | 2 cut(s) | 199, 412 |
| XmiI | GTMKAC | 1 cut(s) | 1405 |
| XmnI | GAANNNNTTC | 1 cut(s) | 921 |
| XspI | CTAG | 3 cut(s) | 1382, 1608, 1698 |
| ZrmI | AGTACT | 1 cut(s) | 1615 |