TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 12 - 182 | 5.5e-55 | TIR domain |
| TIR_2 | PF13676 | 15 - 111 | 3.3e-14 | TIR domain |
| WHD_ROQ1 | PF23282 | 359 - 429 | 5.6e-16 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 497 - 606 | 9.4e-12 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 503 - 705 | 1.7e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 616 - 692 | 2.1e-07 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 622 - 680 | 7.9e-06 | Leucine rich repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 845 |
| AarI | CACCTGC | 1 cut(s) | 1293 |
| AatII | GACGTC | 2 cut(s) | 624, 1335 |
| Acc16I | TGCGCA | 1 cut(s) | 2367 |
| Acc36I | ACCTGC | 2 cut(s) | 1293, 2522 |
| AccB1I | GGYRCC | 1 cut(s) | 2034 |
| AccBSI | CCGCTC | 2 cut(s) | 680, 2032 |
| AccI | GTMKAC | 2 cut(s) | 242, 760 |
| AciI | CCGC | 9 cut(s) | 415, 625, 651, 680, 1757, 2032, 2123, 2129, 2181 |
| AclWI | GGATC | 5 cut(s) | 134, 320, 800, 1887, 2235 |
| AcoI | YGGCCR | 1 cut(s) | 1996 |
| AcsI | RAATTY | 4 cut(s) | 270, 704, 710, 2171 |
| AcuI | CTGAAG | 4 cut(s) | 459, 903, 1098, 1923 |
| AcyI | GRCGYC | 2 cut(s) | 621, 1332 |
| AfaI | GTAC | 5 cut(s) | 339, 799, 954, 1149, 2264 |
| AflIII | ACRYGT | 1 cut(s) | 1339 |
| AhlI | ACTAGT | 1 cut(s) | 1154 |
| AjiI | CACGTC | 1 cut(s) | 420 |
| AjnI | CCWGG | 2 cut(s) | 1278, 1984 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 546, 578, 2156, 2188 |
| Alw21I | GWGCWC | 3 cut(s) | 17, 1003, 2253 |
| Alw44I | GTGCAC | 2 cut(s) | 999, 2249 |
| AlwI | GGATC | 5 cut(s) | 134, 320, 800, 1887, 2235 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 911 |
| AoxI | GGCC | 3 cut(s) | 807, 1996, 2470 |
| ApaLI | GTGCAC | 2 cut(s) | 999, 2249 |
| ApeKI | GCWGC | 4 cut(s) | 185, 304, 583, 2516 |
| ApoI | RAATTY | 4 cut(s) | 270, 704, 710, 2171 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1801, 1833 |
| AseI | ATTAAT | 4 cut(s) | 1383, 1868, 2145, 2457 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 863, 891, 1091 |
| AspLEI | GCGC | 2 cut(s) | 8, 2368 |
| AspS9I | GGNCC | 1 cut(s) | 2386 |
| AsuC2I | CCSGG | 1 cut(s) | 1299 |
| AsuHPI | GGTGA | 5 cut(s) | 12, 374, 1755, 2213, 2555 |
| AsuNHI | GCTAGC | 1 cut(s) | 2087 |
| AvaII | GGWCC | 1 cut(s) | 2386 |
| BaeGI | GKGCMC | 3 cut(s) | 1003, 1701, 2253 |
| BanI | GGYRCC | 1 cut(s) | 2034 |
| BanII | GRGCYC | 1 cut(s) | 17 |
| BauI | CACGAG | 1 cut(s) | 699 |
| BbsI | GAAGAC | 5 cut(s) | 926, 1234, 1335, 1547, 1929 |
| Bbv12I | GWGCWC | 3 cut(s) | 17, 1003, 2253 |
| BbvI | GCAGC | 4 cut(s) | 172, 291, 595, 2528 |
| BccI | CCATC | 3 cut(s) | 99, 2025, 2074 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1151, 1185, 1818, 1852, 2141, 2175 |
| BciT130I | CCWGG | 2 cut(s) | 1280, 1986 |
| BciVI | GTATCC | 1 cut(s) | 61 |
| BcnI | CCSGG | 1 cut(s) | 1299 |
| BcuI | ACTAGT | 1 cut(s) | 1154 |
| BfaI | CTAG | 7 cut(s) | 560, 1070, 1097, 1155, 2007, 2088, 2523 |
| BfmI | CTRYAG | 1 cut(s) | 2188 |
| BfuAI | ACCTGC | 2 cut(s) | 1293, 2522 |
| BfuI | GTATCC | 1 cut(s) | 61 |
| BglII | AGATCT | 4 cut(s) | 425, 979, 1202, 1591 |
| BisI | GCNGC | 4 cut(s) | 186, 305, 584, 2517 |
| BlsI | GCNGC | 4 cut(s) | 187, 306, 585, 2518 |
| BmcAI | AGTACT | 2 cut(s) | 954, 1149 |
| Bme1390I | CCNGG | 3 cut(s) | 1280, 1299, 1986 |
| Bme18I | GGWCC | 1 cut(s) | 2386 |
| BmgBI | CACGTC | 1 cut(s) | 420 |
| BmgT120I | GGNCC | 1 cut(s) | 2386 |
| BmiI | GGNNCC | 3 cut(s) | 835, 2036, 2387 |
| BmrFI | CCNGG | 3 cut(s) | 1280, 1299, 1986 |
| BmrI | ACTGGG | 3 cut(s) | 965, 1022, 1911 |
| BmsI | GCATC | 6 cut(s) | 245, 1227, 1919, 2001, 2503, 2528 |
| BmtI | GCTAGC | 1 cut(s) | 2091 |
| BmuI | ACTGGG | 3 cut(s) | 965, 1022, 1911 |
| BpiI | GAAGAC | 5 cut(s) | 926, 1234, 1335, 1547, 1929 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 680, 712, 682, 714, 1381, 1413 |
| BpmI | CTGGAG | 2 cut(s) | 156, 1463 |
| BpuEI | CTTGAG | 1 cut(s) | 559 |
| BpuMI | CCSGG | 1 cut(s) | 1299 |
| Bsa29I | ATCGAT | 1 cut(s) | 2346 |
| BsaBI | GATNNNNATC | 3 cut(s) | 324, 1131, 1596 |
| BsaHI | GRCGYC | 2 cut(s) | 621, 1332 |
| BsaJI | CCNNGG | 2 cut(s) | 1985, 2566 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 346, 376, 1436, 1466 |
| Bse1I | ACTGG | 5 cut(s) | 587, 960, 1017, 1881, 1917 |
| Bse3DI | GCAATG | 2 cut(s) | 1101, 1917 |
| Bse8I | GATNNNNATC | 3 cut(s) | 324, 1131, 1596 |
| BseBI | CCWGG | 2 cut(s) | 1280, 1986 |
| BseCI | ATCGAT | 1 cut(s) | 2346 |
| BseDI | CCNNGG | 2 cut(s) | 1985, 2566 |
| BseGI | GGATG | 9 cut(s) | 115, 142, 262, 622, 1242, 1754, 1934, 2322, 2542 |
| BseJI | GATNNNNATC | 3 cut(s) | 324, 1131, 1596 |
| BseMI | GCAATG | 2 cut(s) | 1101, 1917 |
| BseMII | CTCAG | 5 cut(s) | 41, 468, 995, 1379, 2147 |
| BseNI | ACTGG | 5 cut(s) | 587, 960, 1017, 1881, 1917 |
| BseRI | GAGGAG | 4 cut(s) | 15, 1693, 2105, 2429 |
| BseSI | GKGCMC | 3 cut(s) | 1003, 1701, 2253 |
| BseXI | GCAGC | 4 cut(s) | 172, 291, 595, 2528 |
| BsgI | GTGCAG | 2 cut(s) | 1327, 2550 |
| BshFI | GGCC | 3 cut(s) | 809, 1998, 2472 |
| BshNI | GGYRCC | 1 cut(s) | 2034 |
| BshVI | ATCGAT | 1 cut(s) | 2346 |
| BsiHKAI | GWGCWC | 3 cut(s) | 17, 1003, 2253 |
| BsiSI | CCGG | 1 cut(s) | 1298 |
| BsmI | GAATGC | 2 cut(s) | 863, 1861 |
| BsnI | GGCC | 3 cut(s) | 809, 1998, 2472 |
| Bsp1286I | GDGCHC | 4 cut(s) | 17, 1003, 1701, 2253 |
| Bsp1407I | TGTACA | 1 cut(s) | 797 |
| BspACI | CCGC | 9 cut(s) | 415, 625, 651, 680, 1757, 2032, 2123, 2129, 2181 |
| BspANI | GGCC | 3 cut(s) | 809, 1998, 2472 |
| BspCNI | CTCAG | 5 cut(s) | 40, 467, 996, 1380, 2148 |
| BspDI | ATCGAT | 1 cut(s) | 2346 |
| BspHI | TCATGA | 1 cut(s) | 379 |
| BspLI | GGNNCC | 3 cut(s) | 835, 2036, 2387 |
| BspMI | ACCTGC | 2 cut(s) | 1293, 2522 |
| BspOI | GCTAGC | 1 cut(s) | 2091 |
| BspPI | GGATC | 5 cut(s) | 134, 320, 800, 1887, 2235 |
| BspQI | GCTCTTC | 1 cut(s) | 22 |
| BspT107I | GGYRCC | 1 cut(s) | 2034 |
| BsrBI | CCGCTC | 2 cut(s) | 680, 2032 |
| BsrDI | GCAATG | 2 cut(s) | 1101, 1917 |
| BsrGI | TGTACA | 1 cut(s) | 797 |
| BsrI | ACTGG | 5 cut(s) | 587, 960, 1017, 1881, 1917 |
| BssECI | CCNNGG | 2 cut(s) | 1985, 2566 |
| BssNI | GRCGYC | 2 cut(s) | 621, 1332 |
| BssSI | CACGAG | 1 cut(s) | 699 |
| Bst2BI | CACGAG | 1 cut(s) | 699 |
| Bst2UI | CCWGG | 2 cut(s) | 1280, 1986 |
| Bst4CI | ACNGT | 4 cut(s) | 301, 998, 1519, 2255 |
| Bst6I | CTCTTC | 4 cut(s) | 22, 970, 1074, 2199 |
| BstACI | GRCGYC | 2 cut(s) | 621, 1332 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 182, 1246 |
| BstAUI | TGTACA | 1 cut(s) | 797 |
| BstC8I | GCNNGC | 1 cut(s) | 2089 |
| BstDEI | CTNAG | 9 cut(s) | 27, 454, 983, 1004, 1388, 1883, 1958, 2133, 2156 |
| BstDSI | CCRYGG | 1 cut(s) | 2566 |
| BstF5I | GGATG | 9 cut(s) | 115, 142, 262, 622, 1242, 1754, 1934, 2322, 2542 |
| BstHHI | GCGC | 2 cut(s) | 8, 2368 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 12, 182, 1246, 2478, 2537 |
| BstNI | CCWGG | 2 cut(s) | 1280, 1986 |
| BstNSI | RCATGY | 2 cut(s) | 1110, 1343 |
| BstSCI | CCNGG | 3 cut(s) | 1278, 1297, 1984 |
| BstSFI | CTRYAG | 1 cut(s) | 2188 |
| BstSLI | GKGCMC | 3 cut(s) | 1003, 1701, 2253 |
| BstV1I | GCAGC | 4 cut(s) | 172, 291, 595, 2528 |
| BstV2I | GAAGAC | 5 cut(s) | 926, 1234, 1335, 1547, 1929 |
| BstX2I | RGATCY | 6 cut(s) | 425, 792, 979, 1202, 1591, 1879 |
| BstYI | RGATCY | 6 cut(s) | 425, 792, 979, 1202, 1591, 1879 |
| Bsu15I | ATCGAT | 1 cut(s) | 2346 |
| BsuI | GTATCC | 1 cut(s) | 61 |
| BsuRI | GGCC | 3 cut(s) | 809, 1998, 2472 |
| BsuTUI | ATCGAT | 1 cut(s) | 2346 |
| BtgI | CCRYGG | 1 cut(s) | 2566 |
| BtrI | CACGTC | 1 cut(s) | 420 |
| BtsCI | GGATG | 9 cut(s) | 115, 142, 262, 622, 1242, 1754, 1934, 2322, 2542 |
| BtsI | GCAGTG | 3 cut(s) | 99, 403, 1570 |
| BtsIMutI | CAGTG | 7 cut(s) | 35, 99, 403, 1001, 1003, 1570, 1924 |
| BveI | ACCTGC | 2 cut(s) | 1293, 2522 |
| Cac8I | GCNNGC | 1 cut(s) | 2089 |
| CaiI | CAGNNNCTG | 1 cut(s) | 911 |
| CciI | TCATGA | 1 cut(s) | 379 |
| CfoI | GCGC | 2 cut(s) | 8, 2368 |
| Cfr13I | GGNCC | 1 cut(s) | 2386 |
| ClaI | ATCGAT | 1 cut(s) | 2346 |
| CseI | GACGC | 1 cut(s) | 1541 |
| Csp6I | GTAC | 5 cut(s) | 338, 798, 953, 1148, 2263 |
| CviQI | GTAC | 5 cut(s) | 338, 798, 953, 1148, 2263 |
| DdeI | CTNAG | 9 cut(s) | 27, 454, 983, 1004, 1388, 1883, 1958, 2133, 2156 |
| DraI | TTTAAA | 2 cut(s) | 1426, 2314 |
| EaeI | YGGCCR | 1 cut(s) | 1996 |
| Eam1104I | CTCTTC | 4 cut(s) | 22, 970, 1074, 2199 |
| EarI | CTCTTC | 4 cut(s) | 22, 970, 1074, 2199 |
| Ecl136II | GAGCTC | 1 cut(s) | 15 |
| Eco147I | AGGCCT | 1 cut(s) | 2472 |
| Eco24I | GRGCYC | 1 cut(s) | 17 |
| Eco32I | GATATC | 1 cut(s) | 2287 |
| Eco47I | GGWCC | 1 cut(s) | 2386 |
| Eco53kI | GAGCTC | 1 cut(s) | 15 |
| Eco57I | CTGAAG | 4 cut(s) | 459, 903, 1098, 1923 |
| EcoICRI | GAGCTC | 1 cut(s) | 15 |
| EcoRI | GAATTC | 1 cut(s) | 270 |
| EcoRII | CCWGG | 2 cut(s) | 1278, 1984 |
| EcoRV | GATATC | 1 cut(s) | 2287 |
| EcoT22I | ATGCAT | 2 cut(s) | 238, 1242 |
| EcoT38I | GRGCYC | 1 cut(s) | 17 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 879, 911 |
| FauI | CCCGC | 2 cut(s) | 644, 2136 |
| FblI | GTMKAC | 2 cut(s) | 242, 760 |
| Fnu4HI | GCNGC | 4 cut(s) | 186, 305, 584, 2517 |
| FokI | GGATG | 9 cut(s) | 122, 149, 269, 629, 1249, 1761, 1941, 2309, 2529 |
| FriOI | GRGCYC | 1 cut(s) | 17 |
| Fsp4HI | GCNGC | 4 cut(s) | 186, 305, 584, 2517 |
| FspBI | CTAG | 7 cut(s) | 560, 1070, 1097, 1155, 2007, 2088, 2523 |
| FspI | TGCGCA | 1 cut(s) | 2367 |
| GlaI | GCGC | 2 cut(s) | 7, 2367 |
| GluI | GCNGC | 4 cut(s) | 186, 305, 584, 2517 |
| GsuI | CTGGAG | 2 cut(s) | 156, 1463 |
| HaeIII | GGCC | 3 cut(s) | 809, 1998, 2472 |
| HapII | CCGG | 1 cut(s) | 1298 |
| HgaI | GACGC | 1 cut(s) | 1541 |
| HhaI | GCGC | 2 cut(s) | 8, 2368 |
| Hin1I | GRCGYC | 2 cut(s) | 621, 1332 |
| Hin6I | GCGC | 2 cut(s) | 6, 2366 |
| HinP1I | GCGC | 2 cut(s) | 6, 2366 |
| HincII | GTYRAC | 4 cut(s) | 243, 1411, 1486, 2216 |
| HindII | GTYRAC | 4 cut(s) | 243, 1411, 1486, 2216 |
| HindIII | AAGCTT | 4 cut(s) | 1544, 1616, 1664, 2042 |
| HpaII | CCGG | 1 cut(s) | 1298 |
| HphI | GGTGA | 5 cut(s) | 12, 374, 1755, 2213, 2555 |
| Hpy188I | TCNGA | 8 cut(s) | 907, 1078, 1389, 1401, 1903, 2049, 2269, 2425 |
| Hpy99I | CGWCG | 2 cut(s) | 244, 2259 |
| HpyAV | CCTTC | 5 cut(s) | 799, 824, 1454, 2333, 2483 |
| HpyCH4III | ACNGT | 4 cut(s) | 301, 998, 1519, 2255 |
| HpyCH4IV | ACGT | 4 cut(s) | 419, 536, 621, 1332 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 12, 182, 1246, 2478, 2537 |
| HpyF3I | CTNAG | 9 cut(s) | 27, 454, 983, 1004, 1388, 1883, 1958, 2133, 2156 |
| HpySE526I | ACGT | 4 cut(s) | 419, 536, 621, 1332 |
| Hsp92I | GRCGYC | 2 cut(s) | 621, 1332 |
| HspAI | GCGC | 2 cut(s) | 6, 2366 |
| LguI | GCTCTTC | 1 cut(s) | 22 |
| LmnI | GCTCC | 4 cut(s) | 833, 1989, 2029, 2416 |
| Lsp1109I | GCAGC | 4 cut(s) | 172, 291, 595, 2528 |
| LweI | GCATC | 6 cut(s) | 245, 1227, 1919, 2001, 2503, 2528 |
| MaeI | CTAG | 7 cut(s) | 560, 1070, 1097, 1155, 2007, 2088, 2523 |
| MaeII | ACGT | 4 cut(s) | 419, 536, 621, 1332 |
| MbiI | CCGCTC | 2 cut(s) | 680, 2032 |
| MfeI | CAATTG | 1 cut(s) | 189 |
| MflI | RGATCY | 6 cut(s) | 425, 792, 979, 1202, 1591, 1879 |
| MhlI | GDGCHC | 4 cut(s) | 17, 1003, 1701, 2253 |
| MlyI | GAGTC | 2 cut(s) | 1399, 2193 |
| MmeI | TCCRAC | 2 cut(s) | 544, 2205 |
| Mph1103I | ATGCAT | 2 cut(s) | 238, 1242 |
| MroXI | GAANNNNTTC | 3 cut(s) | 863, 891, 1091 |
| MspI | CCGG | 1 cut(s) | 1298 |
| MspR9I | CCNGG | 3 cut(s) | 1280, 1299, 1986 |
| MunI | CAATTG | 1 cut(s) | 189 |
| Mva1269I | GAATGC | 2 cut(s) | 863, 1861 |
| MvaI | CCWGG | 2 cut(s) | 1280, 1986 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 12, 182, 1246, 2478, 2537 |
| NciI | CCSGG | 1 cut(s) | 1299 |
| NheI | GCTAGC | 1 cut(s) | 2087 |
| NlaIV | GGNNCC | 3 cut(s) | 835, 2036, 2387 |
| NmuCI | GTSAC | 6 cut(s) | 398, 1262, 1391, 1761, 1817, 1886 |
| NsbI | TGCGCA | 1 cut(s) | 2367 |
| NsiI | ATGCAT | 2 cut(s) | 238, 1242 |
| NspI | RCATGY | 2 cut(s) | 1110, 1343 |
| PagI | TCATGA | 1 cut(s) | 379 |
| PaqCI | CACCTGC | 1 cut(s) | 1293 |
| PceI | AGGCCT | 1 cut(s) | 2472 |
| PciI | ACATGT | 1 cut(s) | 1339 |
| PciSI | GCTCTTC | 1 cut(s) | 22 |
| PctI | GAATGC | 2 cut(s) | 863, 1861 |
| PdmI | GAANNNNTTC | 3 cut(s) | 863, 891, 1091 |
| PkrI | GCNGC | 4 cut(s) | 187, 306, 585, 2518 |
| PleI | GAGTC | 2 cut(s) | 1398, 2192 |
| PpsI | GAGTC | 2 cut(s) | 1398, 2192 |
| PscI | ACATGT | 1 cut(s) | 1339 |
| PshBI | ATTAAT | 4 cut(s) | 1383, 1868, 2145, 2457 |
| PsiI | TTATAA | 1 cut(s) | 845 |
| Psp124BI | GAGCTC | 1 cut(s) | 17 |
| Psp6I | CCWGG | 2 cut(s) | 1278, 1984 |
| PspGI | CCWGG | 2 cut(s) | 1278, 1984 |
| PspN4I | GGNNCC | 3 cut(s) | 835, 2036, 2387 |
| PspPI | GGNCC | 1 cut(s) | 2386 |
| PstNI | CAGNNNCTG | 1 cut(s) | 911 |
| PsuI | RGATCY | 6 cut(s) | 425, 792, 979, 1202, 1591, 1879 |
| RsaI | GTAC | 5 cut(s) | 339, 799, 954, 1149, 2264 |
| RsaNI | GTAC | 5 cut(s) | 338, 798, 953, 1148, 2263 |
| SacI | GAGCTC | 1 cut(s) | 17 |
| SalI | GTCGAC | 1 cut(s) | 241 |
| SapI | GCTCTTC | 1 cut(s) | 22 |
| SatI | GCNGC | 4 cut(s) | 186, 305, 584, 2517 |
| Sau96I | GGNCC | 1 cut(s) | 2386 |
| ScaI | AGTACT | 2 cut(s) | 954, 1149 |
| SchI | GAGTC | 2 cut(s) | 1399, 2193 |
| ScrFI | CCNGG | 3 cut(s) | 1280, 1299, 1986 |
| SduI | GDGCHC | 4 cut(s) | 17, 1003, 1701, 2253 |
| SfaNI | GCATC | 6 cut(s) | 245, 1227, 1919, 2001, 2503, 2528 |
| SfcI | CTRYAG | 1 cut(s) | 2188 |
| SinI | GGWCC | 1 cut(s) | 2386 |
| SmlI | CTYRAG | 1 cut(s) | 574 |
| SmoI | CTYRAG | 1 cut(s) | 574 |
| SpeI | ACTAGT | 1 cut(s) | 1154 |
| SseBI | AGGCCT | 1 cut(s) | 2472 |
| SsiI | CCGC | 9 cut(s) | 415, 625, 651, 680, 1757, 2032, 2123, 2129, 2181 |
| SspI | AATATT | 1 cut(s) | 1092 |
| SspMI | CTAG | 7 cut(s) | 560, 1070, 1097, 1155, 2007, 2088, 2523 |
| SstI | GAGCTC | 1 cut(s) | 17 |
| StuI | AGGCCT | 1 cut(s) | 2472 |
| StyD4I | CCNGG | 3 cut(s) | 1278, 1297, 1984 |
| TaaI | ACNGT | 4 cut(s) | 301, 998, 1519, 2255 |
| TaiI | ACGT | 4 cut(s) | 422, 539, 624, 1335 |
| TaqI | TCGA | 5 cut(s) | 73, 242, 1135, 2330, 2346 |
| TatI | WGTACW | 3 cut(s) | 797, 952, 1147 |
| TscAI | CASTG | 7 cut(s) | 35, 106, 403, 1003, 1008, 1570, 1924 |
| TseFI | GTSAC | 6 cut(s) | 398, 1262, 1391, 1761, 1817, 1886 |
| TseI | GCWGC | 4 cut(s) | 185, 304, 583, 2516 |
| Tsp45I | GTSAC | 6 cut(s) | 398, 1262, 1391, 1761, 1817, 1886 |
| TspDTI | ATGAA | 8 cut(s) | 273, 299, 495, 619, 843, 1854, 1886, 2091 |
| TspGWI | ACGGA | 1 cut(s) | 2378 |
| TspRI | CASTG | 7 cut(s) | 35, 106, 403, 1003, 1008, 1570, 1924 |
| VneI | GTGCAC | 2 cut(s) | 999, 2249 |
| VpaK11BI | GGWCC | 1 cut(s) | 2386 |
| VspI | ATTAAT | 4 cut(s) | 1383, 1868, 2145, 2457 |
| XapI | RAATTY | 4 cut(s) | 270, 704, 710, 2171 |
| XbaI | TCTAGA | 2 cut(s) | 1069, 2006 |
| XceI | RCATGY | 2 cut(s) | 1110, 1343 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2073 |
| XmiI | GTMKAC | 2 cut(s) | 242, 760 |
| XmnI | GAANNNNTTC | 3 cut(s) | 863, 891, 1091 |
| XspI | CTAG | 7 cut(s) | 560, 1070, 1097, 1155, 2007, 2088, 2523 |
| ZraI | GACGTC | 2 cut(s) | 622, 1333 |
| ZrmI | AGTACT | 2 cut(s) | 954, 1149 |
| Zsp2I | ATGCAT | 2 cut(s) | 238, 1242 |