TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 22 - 205 | 4.4e-55 | TIR domain |
| TIR_2 | PF13676 | 25 - 123 | 3.2e-16 | TIR domain |
| NB-ARC | PF00931 | 219 - 374 | 1.1e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 444 - 514 | 1.1e-14 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_13 | PF23286 | 705 - 924 | 4.6e-13 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 706 - 786 | 3e-06 | Leucine-rich repeat region |
| C-JID | PF20160 | 997 - 1128 | 1.3e-07 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 513 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2168, 3217 |
| AccBSI | CCGCTC | 2 cut(s) | 2912, 3194 |
| AccII | CGCG | 2 cut(s) | 1545, 2964 |
| AccIII | TCCGGA | 2 cut(s) | 205, 3058 |
| AciI | CCGC | 7 cut(s) | 103, 2214, 2689, 2910, 2962, 2964, 3192 |
| AclWI | GGATC | 7 cut(s) | 356, 369, 1929, 1945, 2727, 2927, 3069 |
| AcoI | YGGCCR | 3 cut(s) | 480, 1829, 2907 |
| AcuI | CTGAAG | 4 cut(s) | 420, 1871, 2345, 2657 |
| AdeI | CACNNNGTG | 1 cut(s) | 282 |
| AfaI | GTAC | 8 cut(s) | 143, 1249, 1478, 1848, 2308, 2678, 3076, 3371 |
| AflII | CTTAAG | 1 cut(s) | 2366 |
| AflIII | ACRYGT | 2 cut(s) | 550, 1024 |
| AhlI | ACTAGT | 1 cut(s) | 799 |
| AjnI | CCWGG | 3 cut(s) | 1552, 2989, 3261 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1328, 1360, 2235, 2267 |
| Alw21I | GWGCWC | 5 cut(s) | 14, 196, 213, 1032, 1098 |
| Alw26I | GTCTC | 5 cut(s) | 121, 2294, 2303, 2334, 2387 |
| AlwI | GGATC | 7 cut(s) | 356, 369, 1929, 1945, 2727, 2927, 3069 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2402 |
| Ama87I | CYCGRG | 1 cut(s) | 2302 |
| Aor13HI | TCCGGA | 2 cut(s) | 205, 3058 |
| AoxI | GGCC | 4 cut(s) | 480, 1829, 2254, 2907 |
| ApeKI | GCWGC | 3 cut(s) | 390, 1563, 3276 |
| AseI | ATTAAT | 1 cut(s) | 3315 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 847, 1340, 1527, 2887 |
| AspLEI | GCGC | 1 cut(s) | 2823 |
| AspS9I | GGNCC | 3 cut(s) | 2020, 2211, 2966 |
| AsuC2I | CCSGG | 4 cut(s) | 131, 2303, 2304, 2573 |
| AsuHPI | GGTGA | 4 cut(s) | 104, 249, 998, 1384 |
| AsuII | TTCGAA | 1 cut(s) | 2946 |
| AvaI | CYCGRG | 1 cut(s) | 2302 |
| AvaII | GGWCC | 3 cut(s) | 2020, 2211, 2966 |
| AxyI | CCTNAGG | 1 cut(s) | 654 |
| BaeGI | GKGCMC | 1 cut(s) | 3095 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 125, 158 |
| BalI | TGGCCA | 1 cut(s) | 482 |
| BamHI | GGATCC | 1 cut(s) | 361 |
| BanII | GRGCYC | 5 cut(s) | 196, 213, 1098, 2459, 3361 |
| BauI | CACGAG | 1 cut(s) | 33 |
| BbsI | GAAGAC | 4 cut(s) | 102, 1550, 1897, 2633 |
| Bbv12I | GWGCWC | 5 cut(s) | 14, 196, 213, 1032, 1098 |
| BbvI | GCAGC | 3 cut(s) | 402, 1575, 3263 |
| BceAI | ACGGC | 2 cut(s) | 1551, 2325 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 94, 128 |
| BciT130I | CCWGG | 3 cut(s) | 1554, 2991, 3263 |
| BciVI | GTATCC | 2 cut(s) | 1809, 3259 |
| BclI | TGATCA | 1 cut(s) | 1471 |
| BcnI | CCSGG | 4 cut(s) | 131, 2303, 2304, 2573 |
| BcoDI | GTCTC | 5 cut(s) | 121, 2294, 2303, 2334, 2387 |
| BcuI | ACTAGT | 1 cut(s) | 799 |
| BfmI | CTRYAG | 2 cut(s) | 137, 2376 |
| BfoI | RGCGCY | 1 cut(s) | 2824 |
| BfrI | CTTAAG | 1 cut(s) | 2366 |
| BfuI | GTATCC | 2 cut(s) | 1809, 3259 |
| BisI | GCNGC | 4 cut(s) | 391, 1564, 2910, 3277 |
| BlpI | GCTNAGC | 1 cut(s) | 411 |
| BlsI | GCNGC | 4 cut(s) | 392, 1565, 2911, 3278 |
| Bme1390I | CCNGG | 7 cut(s) | 131, 1554, 2303, 2304, 2573, 2991, 3263 |
| Bme18I | GGWCC | 3 cut(s) | 2020, 2211, 2966 |
| BmeT110I | CYCGRG | 1 cut(s) | 2302 |
| BmgT120I | GGNCC | 3 cut(s) | 2020, 2211, 2966 |
| BmiI | GGNNCC | 4 cut(s) | 363, 877, 1551, 2212 |
| BmrFI | CCNGG | 7 cut(s) | 131, 1554, 2303, 2304, 2573, 2991, 3263 |
| BmsI | GCATC | 9 cut(s) | 490, 766, 1075, 1303, 1482, 1612, 1692, 1845, 2345 |
| BpiI | GAAGAC | 4 cut(s) | 102, 1550, 1897, 2633 |
| BpmI | CTGGAG | 1 cut(s) | 2276 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2897, 2913, 3195 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 411 |
| Bpu14I | TTCGAA | 1 cut(s) | 2946 |
| BpuEI | CTTGAG | 6 cut(s) | 100, 235, 1112, 1795, 2000, 2105 |
| BpuMI | CCSGG | 4 cut(s) | 131, 2303, 2304, 2573 |
| BsaAI | YACGTR | 2 cut(s) | 2099, 2834 |
| BsaBI | GATNNNNATC | 1 cut(s) | 2556 |
| BsaJI | CCNNGG | 3 cut(s) | 2302, 2513, 2962 |
| BsaWI | WCCGGW | 3 cut(s) | 205, 2716, 3058 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 8, 38, 2384, 2414, 2706, 2736 |
| Bse118I | RCCGGY | 3 cut(s) | 144, 343, 3116 |
| Bse1I | ACTGG | 2 cut(s) | 2266, 3014 |
| Bse21I | CCTNAGG | 1 cut(s) | 654 |
| Bse3DI | GCAATG | 2 cut(s) | 1350, 2031 |
| Bse8I | GATNNNNATC | 1 cut(s) | 2556 |
| BseAI | TCCGGA | 2 cut(s) | 205, 3058 |
| BseBI | CCWGG | 3 cut(s) | 1554, 2991, 3263 |
| BseDI | CCNNGG | 3 cut(s) | 2302, 2513, 2962 |
| BseJI | GATNNNNATC | 1 cut(s) | 2556 |
| BseMI | GCAATG | 2 cut(s) | 1350, 2031 |
| BseMII | CTCAG | 7 cut(s) | 645, 753, 843, 2143, 2211, 2927, 3209 |
| BseNI | ACTGG | 2 cut(s) | 2266, 3014 |
| BseRI | GAGGAG | 5 cut(s) | 671, 1250, 1562, 1997, 3383 |
| BseSI | GKGCMC | 1 cut(s) | 3095 |
| BseXI | GCAGC | 3 cut(s) | 402, 1575, 3263 |
| BseYI | CCCAGC | 1 cut(s) | 2413 |
| Bsh1236I | CGCG | 2 cut(s) | 1545, 2964 |
| Bsh1285I | CGRYCG | 1 cut(s) | 175 |
| BshFI | GGCC | 4 cut(s) | 482, 1831, 2256, 2909 |
| BsiEI | CGRYCG | 1 cut(s) | 175 |
| BsiHKAI | GWGCWC | 5 cut(s) | 14, 196, 213, 1032, 1098 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2302 |
| BslFI | GGGAC | 3 cut(s) | 1736, 1898, 2224 |
| BsmAI | GTCTC | 5 cut(s) | 121, 2294, 2303, 2334, 2387 |
| BsmBI | CGTCTC | 1 cut(s) | 121 |
| BsmFI | GGGAC | 3 cut(s) | 1736, 1898, 2224 |
| BsmI | GAATGC | 3 cut(s) | 1355, 1694, 2954 |
| BsnI | GGCC | 4 cut(s) | 482, 1831, 2256, 2909 |
| BsoBI | CYCGRG | 1 cut(s) | 2302 |
| Bsp119I | TTCGAA | 1 cut(s) | 2946 |
| Bsp1286I | GDGCHC | 8 cut(s) | 14, 196, 213, 1032, 1098, 2459, 3095, 3361 |
| Bsp13I | TCCGGA | 2 cut(s) | 205, 3058 |
| Bsp1407I | TGTACA | 1 cut(s) | 3074 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 411 |
| Bsp68I | TCGCGA | 1 cut(s) | 1545 |
| BspACI | CCGC | 7 cut(s) | 103, 2214, 2689, 2910, 2962, 2964, 3192 |
| BspANI | GGCC | 4 cut(s) | 482, 1831, 2256, 2909 |
| BspCNI | CTCAG | 7 cut(s) | 646, 754, 842, 2142, 2212, 2926, 3208 |
| BspEI | TCCGGA | 2 cut(s) | 205, 3058 |
| BspFNI | CGCG | 2 cut(s) | 1545, 2964 |
| BspLI | GGNNCC | 4 cut(s) | 363, 877, 1551, 2212 |
| BspMAI | CTGCAG | 1 cut(s) | 141 |
| BspPI | GGATC | 7 cut(s) | 356, 369, 1929, 1945, 2727, 2927, 3069 |
| BspQI | GCTCTTC | 1 cut(s) | 3341 |
| BspT104I | TTCGAA | 1 cut(s) | 2946 |
| BspTI | CTTAAG | 1 cut(s) | 2366 |
| BsrBI | CCGCTC | 2 cut(s) | 2912, 3194 |
| BsrDI | GCAATG | 2 cut(s) | 1350, 2031 |
| BsrFI | RCCGGY | 3 cut(s) | 144, 343, 3116 |
| BsrGI | TGTACA | 1 cut(s) | 3074 |
| BsrI | ACTGG | 2 cut(s) | 2266, 3014 |
| BssAI | RCCGGY | 3 cut(s) | 144, 343, 3116 |
| BssECI | CCNNGG | 3 cut(s) | 2302, 2513, 2962 |
| BssSI | CACGAG | 1 cut(s) | 33 |
| BssT1I | CCWWGG | 1 cut(s) | 2513 |
| Bst2BI | CACGAG | 1 cut(s) | 33 |
| Bst2UI | CCWGG | 3 cut(s) | 1554, 2991, 3263 |
| Bst4CI | ACNGT | 6 cut(s) | 1641, 2009, 2058, 2398, 3046, 3097 |
| Bst6I | CTCTTC | 5 cut(s) | 1656, 1818, 2337, 2940, 3341 |
| BstAFI | CTTAAG | 1 cut(s) | 2366 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2658 |
| BstAUI | TGTACA | 1 cut(s) | 3074 |
| BstBAI | YACGTR | 2 cut(s) | 2099, 2834 |
| BstBI | TTCGAA | 1 cut(s) | 2946 |
| BstC8I | GCNNGC | 3 cut(s) | 1842, 2143, 2650 |
| BstDSI | CCRYGG | 1 cut(s) | 2962 |
| BstFNI | CGCG | 2 cut(s) | 1545, 2964 |
| BstH2I | RGCGCY | 1 cut(s) | 2824 |
| BstHHI | GCGC | 1 cut(s) | 2823 |
| BstMAI | GTCTC | 5 cut(s) | 121, 2294, 2303, 2334, 2387 |
| BstMCI | CGRYCG | 1 cut(s) | 175 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 145, 1069, 1837, 2463, 2658, 3164 |
| BstNI | CCWGG | 3 cut(s) | 1554, 2991, 3263 |
| BstNSI | RCATGY | 1 cut(s) | 2145 |
| BstSCI | CCNGG | 7 cut(s) | 129, 1552, 2301, 2302, 2571, 2989, 3261 |
| BstSFI | CTRYAG | 2 cut(s) | 137, 2376 |
| BstSLI | GKGCMC | 1 cut(s) | 3095 |
| BstUI | CGCG | 2 cut(s) | 1545, 2964 |
| BstV1I | GCAGC | 3 cut(s) | 402, 1575, 3263 |
| BstV2I | GAAGAC | 4 cut(s) | 102, 1550, 1897, 2633 |
| BstX2I | RGATCY | 4 cut(s) | 361, 1921, 1950, 2719 |
| BstYI | RGATCY | 4 cut(s) | 361, 1921, 1950, 2719 |
| Bsu36I | CCTNAGG | 1 cut(s) | 654 |
| BsuI | GTATCC | 2 cut(s) | 1809, 3259 |
| BsuRI | GGCC | 4 cut(s) | 482, 1831, 2256, 2909 |
| BtgI | CCRYGG | 1 cut(s) | 2962 |
| BtsIMutI | CAGTG | 3 cut(s) | 1087, 2403, 3093 |
| BtuMI | TCGCGA | 1 cut(s) | 1545 |
| Cac8I | GCNNGC | 3 cut(s) | 1842, 2143, 2650 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2402 |
| CfoI | GCGC | 1 cut(s) | 2823 |
| Cfr10I | RCCGGY | 3 cut(s) | 144, 343, 3116 |
| Cfr13I | GGNCC | 3 cut(s) | 2020, 2211, 2966 |
| Cfr42I | CCGCGG | 1 cut(s) | 2965 |
| Cfr9I | CCCGGG | 1 cut(s) | 2302 |
| CpoI | CGGWCCG | 1 cut(s) | 2966 |
| Csp6I | GTAC | 8 cut(s) | 142, 1248, 1477, 1847, 2307, 2677, 3075, 3370 |
| CspI | CGGWCCG | 1 cut(s) | 2966 |
| CviAII | CATG | 9 cut(s) | 316, 416, 791, 1496, 1518, 2142, 2207, 3072, 3330 |
| CviQI | GTAC | 8 cut(s) | 142, 1248, 1477, 1847, 2307, 2677, 3075, 3370 |
| DraI | TTTAAA | 2 cut(s) | 1998, 2320 |
| DraIII | CACNNNGTG | 1 cut(s) | 282 |
| EaeI | YGGCCR | 3 cut(s) | 480, 1829, 2907 |
| Eam1104I | CTCTTC | 5 cut(s) | 1656, 1818, 2337, 2940, 3341 |
| EarI | CTCTTC | 5 cut(s) | 1656, 1818, 2337, 2940, 3341 |
| Ecl136II | GAGCTC | 3 cut(s) | 194, 211, 1096 |
| Eco130I | CCWWGG | 1 cut(s) | 2513 |
| Eco24I | GRGCYC | 5 cut(s) | 196, 213, 1098, 2459, 3361 |
| Eco47I | GGWCC | 3 cut(s) | 2020, 2211, 2966 |
| Eco53kI | GAGCTC | 3 cut(s) | 194, 211, 1096 |
| Eco57I | CTGAAG | 4 cut(s) | 420, 1871, 2345, 2657 |
| Eco81I | CCTNAGG | 1 cut(s) | 654 |
| Eco88I | CYCGRG | 1 cut(s) | 2302 |
| EcoICRI | GAGCTC | 3 cut(s) | 194, 211, 1096 |
| EcoRI | GAATTC | 3 cut(s) | 336, 1269, 1779 |
| EcoRII | CCWGG | 3 cut(s) | 1552, 2989, 3261 |
| EcoT14I | CCWWGG | 1 cut(s) | 2513 |
| EcoT22I | ATGCAT | 1 cut(s) | 1497 |
| EcoT38I | GRGCYC | 5 cut(s) | 196, 213, 1098, 2459, 3361 |
| ErhI | CCWWGG | 1 cut(s) | 2513 |
| Esp3I | CGTCTC | 1 cut(s) | 121 |
| FaeI | CATG | 9 cut(s) | 319, 419, 794, 1499, 1521, 2145, 2210, 3075, 3333 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1328, 1360, 1574, 1606 |
| FaqI | GGGAC | 3 cut(s) | 1736, 1898, 2224 |
| FatI | CATG | 9 cut(s) | 315, 415, 790, 1495, 1517, 2141, 2206, 3071, 3329 |
| FauI | CCCGC | 1 cut(s) | 110 |
| FauNDI | CATATG | 2 cut(s) | 1787, 1917 |
| FbaI | TGATCA | 1 cut(s) | 1471 |
| Fnu4HI | GCNGC | 4 cut(s) | 391, 1564, 2910, 3277 |
| FriOI | GRGCYC | 5 cut(s) | 196, 213, 1098, 2459, 3361 |
| Fsp4HI | GCNGC | 4 cut(s) | 391, 1564, 2910, 3277 |
| GlaI | GCGC | 1 cut(s) | 2822 |
| GluI | GCNGC | 4 cut(s) | 391, 1564, 2910, 3277 |
| GsaI | CCCAGC | 1 cut(s) | 2417 |
| GsuI | CTGGAG | 1 cut(s) | 2276 |
| HaeII | RGCGCY | 1 cut(s) | 2824 |
| HaeIII | GGCC | 4 cut(s) | 482, 1831, 2256, 2909 |
| HhaI | GCGC | 1 cut(s) | 2823 |
| Hin1II | CATG | 9 cut(s) | 319, 419, 794, 1499, 1521, 2145, 2210, 3075, 3333 |
| Hin6I | GCGC | 1 cut(s) | 2821 |
| HinP1I | GCGC | 1 cut(s) | 2821 |
| HincII | GTYRAC | 1 cut(s) | 797 |
| HindII | GTYRAC | 1 cut(s) | 797 |
| HindIII | AAGCTT | 4 cut(s) | 2048, 2363, 2447, 2669 |
| HphI | GGTGA | 4 cut(s) | 104, 249, 998, 1384 |
| Hpy166II | GTNNAC | 7 cut(s) | 797, 868, 1649, 1962, 2041, 2339, 3203 |
| Hpy8I | GTNNAC | 7 cut(s) | 797, 868, 1649, 1962, 2041, 2339, 3203 |
| Hpy99I | CGWCG | 3 cut(s) | 374, 1037, 2427 |
| HpyCH4III | ACNGT | 6 cut(s) | 1641, 2009, 2058, 2398, 3046, 3097 |
| HpyCH4IV | ACGT | 6 cut(s) | 372, 550, 1024, 2098, 2425, 2833 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 145, 1069, 1837, 2463, 2658, 3164 |
| HpySE526I | ACGT | 6 cut(s) | 372, 550, 1024, 2098, 2425, 2833 |
| Hsp92II | CATG | 9 cut(s) | 319, 419, 794, 1499, 1521, 2145, 2210, 3075, 3333 |
| HspAI | GCGC | 1 cut(s) | 2821 |
| Kpn2I | TCCGGA | 2 cut(s) | 205, 3058 |
| Ksp22I | TGATCA | 1 cut(s) | 1471 |
| KspI | CCGCGG | 1 cut(s) | 2965 |
| LguI | GCTCTTC | 1 cut(s) | 3341 |
| LmnI | GCTCC | 6 cut(s) | 191, 208, 387, 655, 1549, 2929 |
| Lsp1109I | GCAGC | 3 cut(s) | 402, 1575, 3263 |
| LweI | GCATC | 9 cut(s) | 490, 766, 1075, 1303, 1482, 1612, 1692, 1845, 2345 |
| MaeII | ACGT | 6 cut(s) | 372, 550, 1024, 2098, 2425, 2833 |
| MaeIII | GTNAC | 6 cut(s) | 431, 944, 1006, 1103, 1257, 2003 |
| MbiI | CCGCTC | 2 cut(s) | 2912, 3194 |
| MfeI | CAATTG | 2 cut(s) | 2238, 2842 |
| MflI | RGATCY | 4 cut(s) | 361, 1921, 1950, 2719 |
| MhlI | GDGCHC | 8 cut(s) | 14, 196, 213, 1032, 1098, 2459, 3095, 3361 |
| MlsI | TGGCCA | 1 cut(s) | 482 |
| MluNI | TGGCCA | 1 cut(s) | 482 |
| MlyI | GAGTC | 7 cut(s) | 320, 618, 1265, 1532, 1940, 2305, 2491 |
| MmeI | TCCRAC | 4 cut(s) | 41, 393, 589, 1304 |
| Mox20I | TGGCCA | 1 cut(s) | 482 |
| Mph1103I | ATGCAT | 1 cut(s) | 1497 |
| MroI | TCCGGA | 2 cut(s) | 205, 3058 |
| MroXI | GAANNNNTTC | 4 cut(s) | 847, 1340, 1527, 2887 |
| MscI | TGGCCA | 1 cut(s) | 482 |
| MslI | CAYNNNNRTG | 1 cut(s) | 3082 |
| Msp20I | TGGCCA | 1 cut(s) | 482 |
| MspA1I | CMGCKG | 1 cut(s) | 2964 |
| MspCI | CTTAAG | 1 cut(s) | 2366 |
| MspR9I | CCNGG | 7 cut(s) | 131, 1554, 2303, 2304, 2573, 2991, 3263 |
| MunI | CAATTG | 2 cut(s) | 2238, 2842 |
| Mva1269I | GAATGC | 3 cut(s) | 1355, 1694, 2954 |
| MvaI | CCWGG | 3 cut(s) | 1554, 2991, 3263 |
| MvnI | CGCG | 2 cut(s) | 1545, 2964 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 145, 1069, 1837, 2463, 2658, 3164 |
| NciI | CCSGG | 4 cut(s) | 131, 2303, 2304, 2573 |
| NdeI | CATATG | 2 cut(s) | 1787, 1917 |
| NlaIII | CATG | 9 cut(s) | 319, 419, 794, 1499, 1521, 2145, 2210, 3075, 3333 |
| NlaIV | GGNNCC | 4 cut(s) | 363, 877, 1551, 2212 |
| NmuCI | GTSAC | 4 cut(s) | 944, 1103, 1257, 2003 |
| NruI | TCGCGA | 1 cut(s) | 1545 |
| NsiI | ATGCAT | 1 cut(s) | 1497 |
| NspI | RCATGY | 1 cut(s) | 2145 |
| NspV | TTCGAA | 1 cut(s) | 2946 |
| PaeI | GCATGC | 1 cut(s) | 2145 |
| PciSI | GCTCTTC | 1 cut(s) | 3341 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2341 |
| PctI | GAATGC | 3 cut(s) | 1355, 1694, 2954 |
| PdmI | GAANNNNTTC | 4 cut(s) | 847, 1340, 1527, 2887 |
| PflFI | GACNNNGTC | 1 cut(s) | 2398 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2168, 3217 |
| PfoI | TCCNGGA | 3 cut(s) | 2571, 2989, 3261 |
| PkrI | GCNGC | 4 cut(s) | 392, 1565, 2911, 3278 |
| PleI | GAGTC | 7 cut(s) | 319, 618, 1264, 1532, 1939, 2304, 2490 |
| PpsI | GAGTC | 7 cut(s) | 319, 618, 1264, 1532, 1939, 2304, 2490 |
| Ppu21I | YACGTR | 2 cut(s) | 2099, 2834 |
| PshBI | ATTAAT | 1 cut(s) | 3315 |
| PsiI | TTATAA | 1 cut(s) | 513 |
| Psp124BI | GAGCTC | 3 cut(s) | 196, 213, 1098 |
| Psp6I | CCWGG | 3 cut(s) | 1552, 2989, 3261 |
| PspFI | CCCAGC | 1 cut(s) | 2413 |
| PspGI | CCWGG | 3 cut(s) | 1552, 2989, 3261 |
| PspN4I | GGNNCC | 4 cut(s) | 363, 877, 1551, 2212 |
| PspPI | GGNCC | 3 cut(s) | 2020, 2211, 2966 |
| PstI | CTGCAG | 1 cut(s) | 141 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2402 |
| PsuI | RGATCY | 4 cut(s) | 361, 1921, 1950, 2719 |
| PsyI | GACNNNGTC | 1 cut(s) | 2398 |
| RruI | TCGCGA | 1 cut(s) | 1545 |
| RsaI | GTAC | 8 cut(s) | 143, 1249, 1478, 1848, 2308, 2678, 3076, 3371 |
| RsaNI | GTAC | 8 cut(s) | 142, 1248, 1477, 1847, 2307, 2677, 3075, 3370 |
| RseI | CAYNNNNRTG | 1 cut(s) | 3082 |
| Rsr2I | CGGWCCG | 1 cut(s) | 2966 |
| RsrII | CGGWCCG | 1 cut(s) | 2966 |
| SacI | GAGCTC | 3 cut(s) | 196, 213, 1098 |
| SacII | CCGCGG | 1 cut(s) | 2965 |
| SapI | GCTCTTC | 1 cut(s) | 3341 |
| SatI | GCNGC | 4 cut(s) | 391, 1564, 2910, 3277 |
| Sau96I | GGNCC | 3 cut(s) | 2020, 2211, 2966 |
| SchI | GAGTC | 7 cut(s) | 320, 618, 1265, 1532, 1940, 2305, 2491 |
| ScrFI | CCNGG | 7 cut(s) | 131, 1554, 2303, 2304, 2573, 2991, 3263 |
| SduI | GDGCHC | 8 cut(s) | 14, 196, 213, 1032, 1098, 2459, 3095, 3361 |
| SfaNI | GCATC | 9 cut(s) | 490, 766, 1075, 1303, 1482, 1612, 1692, 1845, 2345 |
| SfcI | CTRYAG | 2 cut(s) | 137, 2376 |
| Sfr303I | CCGCGG | 1 cut(s) | 2965 |
| SfuI | TTCGAA | 1 cut(s) | 2946 |
| SgrBI | CCGCGG | 1 cut(s) | 2965 |
| SinI | GGWCC | 3 cut(s) | 2020, 2211, 2966 |
| SmaI | CCCGGG | 1 cut(s) | 2304 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 3082 |
| SmlI | CTYRAG | 7 cut(s) | 79, 214, 1091, 1774, 1979, 2120, 2366 |
| SmoI | CTYRAG | 7 cut(s) | 79, 214, 1091, 1774, 1979, 2120, 2366 |
| SpeI | ACTAGT | 1 cut(s) | 799 |
| SphI | GCATGC | 1 cut(s) | 2145 |
| SsiI | CCGC | 7 cut(s) | 103, 2214, 2689, 2910, 2962, 2964, 3192 |
| SspI | AATATT | 3 cut(s) | 1406, 2886, 2980 |
| SstI | GAGCTC | 3 cut(s) | 196, 213, 1098 |
| StyD4I | CCNGG | 7 cut(s) | 129, 1552, 2301, 2302, 2571, 2989, 3261 |
| StyI | CCWWGG | 1 cut(s) | 2513 |
| TaaI | ACNGT | 6 cut(s) | 1641, 2009, 2058, 2398, 3046, 3097 |
| TaiI | ACGT | 6 cut(s) | 375, 553, 1027, 2101, 2428, 2836 |
| TaqII | GACCGA | 1 cut(s) | 189 |
| TatI | WGTACW | 4 cut(s) | 1247, 1846, 2676, 3074 |
| TauI | GCSGC | 1 cut(s) | 2912 |
| TscAI | CASTG | 3 cut(s) | 1087, 2403, 3100 |
| TseFI | GTSAC | 4 cut(s) | 944, 1103, 1257, 2003 |
| TseI | GCWGC | 3 cut(s) | 390, 1563, 3276 |
| Tsp45I | GTSAC | 4 cut(s) | 944, 1103, 1257, 2003 |
| TspGWI | ACGGA | 4 cut(s) | 1902, 2333, 2514, 2958 |
| TspMI | CCCGGG | 1 cut(s) | 2302 |
| TspRI | CASTG | 3 cut(s) | 1087, 2403, 3100 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2398 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2168, 3217 |
| Vha464I | CTTAAG | 1 cut(s) | 2366 |
| VpaK11BI | GGWCC | 3 cut(s) | 2020, 2211, 2966 |
| VspI | ATTAAT | 1 cut(s) | 3315 |
| XbaI | TCTAGA | 1 cut(s) | 967 |
| XceI | RCATGY | 1 cut(s) | 2145 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 36, 57, 283 |
| XmaI | CCCGGG | 1 cut(s) | 2302 |
| XmnI | GAANNNNTTC | 4 cut(s) | 847, 1340, 1527, 2887 |
| Zsp2I | ATGCAT | 1 cut(s) | 1497 |