TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 253 - 306 | 7.2e-06 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 349 - 460 | 6.3e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 405 - 571 | 5.8e-09 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 500 - 572 | 8.6e-09 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1526 |
| Acc36I | ACCTGC | 1 cut(s) | 939 |
| AciI | CCGC | 2 cut(s) | 675, 1331 |
| AclWI | GGATC | 2 cut(s) | 98, 1614 |
| AcsI | RAATTY | 9 cut(s) | 294, 381, 771, 1108, 1155, 1268, 1563, 1600, 1778 |
| AcuI | CTGAAG | 7 cut(s) | 11, 150, 509, 532, 944, 1336, 1764 |
| AcyI | GRCGYC | 1 cut(s) | 1523 |
| AfaI | GTAC | 3 cut(s) | 738, 998, 1105 |
| AfeI | AGCGCT | 1 cut(s) | 1349 |
| AflII | CTTAAG | 1 cut(s) | 1421 |
| AflIII | ACRYGT | 3 cut(s) | 13, 788, 846 |
| AjiI | CACGTC | 1 cut(s) | 14 |
| AjnI | CCWGG | 1 cut(s) | 934 |
| AjuI | GAANNNNNNNTTGG | 5 cut(s) | 141, 173, 983, 1015, 1763 |
| Alw21I | GWGCWC | 2 cut(s) | 585, 854 |
| Alw26I | GTCTC | 1 cut(s) | 1196 |
| Alw44I | GTGCAC | 1 cut(s) | 850 |
| AlwI | GGATC | 2 cut(s) | 98, 1614 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1742 |
| Aor51HI | AGCGCT | 1 cut(s) | 1349 |
| ApaLI | GTGCAC | 1 cut(s) | 850 |
| ApeKI | GCWGC | 4 cut(s) | 120, 945, 1242, 1402 |
| ApoI | RAATTY | 9 cut(s) | 294, 381, 771, 1108, 1155, 1268, 1563, 1600, 1778 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 411, 545 |
| AspLEI | GCGC | 1 cut(s) | 1350 |
| AspS9I | GGNCC | 1 cut(s) | 642 |
| AsuHPI | GGTGA | 2 cut(s) | 460, 1466 |
| AvaII | GGWCC | 1 cut(s) | 642 |
| BaeGI | GKGCMC | 1 cut(s) | 854 |
| BanII | GRGCYC | 1 cut(s) | 585 |
| BbsI | GAAGAC | 3 cut(s) | 43, 608, 1506 |
| Bbv12I | GWGCWC | 2 cut(s) | 585, 854 |
| BbvI | GCAGC | 4 cut(s) | 132, 957, 1229, 1389 |
| BccI | CCATC | 5 cut(s) | 428, 740, 754, 1135, 1726 |
| BciT130I | CCWGG | 1 cut(s) | 936 |
| BcoDI | GTCTC | 1 cut(s) | 1196 |
| BfaI | CTAG | 3 cut(s) | 276, 362, 444 |
| BfoI | RGCGCY | 1 cut(s) | 1351 |
| BfrI | CTTAAG | 1 cut(s) | 1421 |
| BfuAI | ACCTGC | 1 cut(s) | 939 |
| BisI | GCNGC | 4 cut(s) | 121, 946, 1243, 1403 |
| BlsI | GCNGC | 4 cut(s) | 122, 947, 1244, 1404 |
| Bme1390I | CCNGG | 1 cut(s) | 936 |
| Bme18I | GGWCC | 1 cut(s) | 642 |
| BmgBI | CACGTC | 1 cut(s) | 14 |
| BmgT120I | GGNCC | 1 cut(s) | 642 |
| BmiI | GGNNCC | 1 cut(s) | 643 |
| BmrFI | CCNGG | 1 cut(s) | 936 |
| BmsI | GCATC | 2 cut(s) | 184, 327 |
| BpiI | GAAGAC | 3 cut(s) | 43, 608, 1506 |
| BpuEI | CTTGAG | 1 cut(s) | 1100 |
| Bsa29I | ATCGAT | 1 cut(s) | 1020 |
| BsaAI | YACGTR | 1 cut(s) | 996 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1122 |
| BsaHI | GRCGYC | 1 cut(s) | 1523 |
| BsaJI | CCNNGG | 2 cut(s) | 1460, 1593 |
| Bse3DI | GCAATG | 1 cut(s) | 1131 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1122 |
| BseBI | CCWGG | 1 cut(s) | 936 |
| BseCI | ATCGAT | 1 cut(s) | 1020 |
| BseDI | CCNNGG | 2 cut(s) | 1460, 1593 |
| BseGI | GGATG | 3 cut(s) | 430, 1123, 1127 |
| BseJI | GATNNNNATC | 1 cut(s) | 1122 |
| BseMI | GCAATG | 1 cut(s) | 1131 |
| BseMII | CTCAG | 5 cut(s) | 370, 579, 812, 1447, 1624 |
| BseSI | GKGCMC | 1 cut(s) | 854 |
| BseXI | GCAGC | 4 cut(s) | 132, 957, 1229, 1389 |
| BseYI | CCCAGC | 1 cut(s) | 225 |
| BshVI | ATCGAT | 1 cut(s) | 1020 |
| BsiHKAI | GWGCWC | 2 cut(s) | 585, 854 |
| BsiSI | CCGG | 1 cut(s) | 563 |
| BslFI | GGGAC | 3 cut(s) | 119, 1327, 1753 |
| BsmAI | GTCTC | 1 cut(s) | 1196 |
| BsmFI | GGGAC | 3 cut(s) | 119, 1327, 1753 |
| BsmI | GAATGC | 2 cut(s) | 547, 1644 |
| Bsp1286I | GDGCHC | 2 cut(s) | 585, 854 |
| Bsp143I | GATC | 4 cut(s) | 90, 109, 1021, 1606 |
| BspACI | CCGC | 2 cut(s) | 675, 1331 |
| BspCNI | CTCAG | 5 cut(s) | 369, 580, 811, 1446, 1623 |
| BspDI | ATCGAT | 1 cut(s) | 1020 |
| BspLI | GGNNCC | 1 cut(s) | 643 |
| BspMI | ACCTGC | 1 cut(s) | 939 |
| BspPI | GGATC | 2 cut(s) | 98, 1614 |
| BspQI | GCTCTTC | 2 cut(s) | 528, 924 |
| BspTI | CTTAAG | 1 cut(s) | 1421 |
| BsrDI | GCAATG | 1 cut(s) | 1131 |
| BssECI | CCNNGG | 2 cut(s) | 1460, 1593 |
| BssMI | GATC | 4 cut(s) | 90, 109, 1021, 1606 |
| BssNI | GRCGYC | 1 cut(s) | 1523 |
| BssT1I | CCWWGG | 2 cut(s) | 1460, 1593 |
| Bst2UI | CCWGG | 1 cut(s) | 936 |
| Bst4CI | ACNGT | 2 cut(s) | 718, 839 |
| Bst6I | CTCTTC | 4 cut(s) | 144, 528, 924, 1460 |
| BstACI | GRCGYC | 1 cut(s) | 1523 |
| BstAFI | CTTAAG | 1 cut(s) | 1421 |
| BstBAI | YACGTR | 1 cut(s) | 996 |
| BstC8I | GCNNGC | 4 cut(s) | 223, 606, 673, 1642 |
| BstDEI | CTNAG | 8 cut(s) | 356, 588, 798, 813, 1025, 1433, 1610, 1659 |
| BstF5I | GGATG | 3 cut(s) | 430, 1123, 1127 |
| BstH2I | RGCGCY | 1 cut(s) | 1351 |
| BstHHI | GCGC | 1 cut(s) | 1350 |
| BstKTI | GATC | 4 cut(s) | 93, 112, 1024, 1609 |
| BstMAI | GTCTC | 1 cut(s) | 1196 |
| BstMBI | GATC | 4 cut(s) | 90, 109, 1021, 1606 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 31, 218, 227, 1660 |
| BstNI | CCWGG | 1 cut(s) | 936 |
| BstNSI | RCATGY | 4 cut(s) | 608, 675, 792, 850 |
| BstSCI | CCNGG | 1 cut(s) | 934 |
| BstSLI | GKGCMC | 1 cut(s) | 854 |
| BstSNI | TACGTA | 1 cut(s) | 996 |
| BstV1I | GCAGC | 4 cut(s) | 132, 957, 1229, 1389 |
| BstV2I | GAAGAC | 3 cut(s) | 43, 608, 1506 |
| BstX2I | RGATCY | 1 cut(s) | 1606 |
| BstYI | RGATCY | 1 cut(s) | 1606 |
| Bsu15I | ATCGAT | 1 cut(s) | 1020 |
| BsuTUI | ATCGAT | 1 cut(s) | 1020 |
| BtrI | CACGTC | 1 cut(s) | 14 |
| BtsCI | GGATG | 3 cut(s) | 430, 1123, 1127 |
| BtsI | GCAGTG | 1 cut(s) | 87 |
| BtsIMutI | CAGTG | 2 cut(s) | 87, 1360 |
| BveI | ACCTGC | 1 cut(s) | 939 |
| Cac8I | GCNNGC | 4 cut(s) | 223, 606, 673, 1642 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1742 |
| CfoI | GCGC | 1 cut(s) | 1350 |
| Cfr13I | GGNCC | 1 cut(s) | 642 |
| ClaI | ATCGAT | 1 cut(s) | 1020 |
| CseI | GACGC | 1 cut(s) | 951 |
| Csp6I | GTAC | 3 cut(s) | 737, 997, 1104 |
| CviAII | CATG | 6 cut(s) | 146, 605, 672, 789, 847, 977 |
| CviQI | GTAC | 3 cut(s) | 737, 997, 1104 |
| DdeI | CTNAG | 8 cut(s) | 356, 588, 798, 813, 1025, 1433, 1610, 1659 |
| DpnI | GATC | 4 cut(s) | 92, 111, 1023, 1608 |
| DpnII | GATC | 4 cut(s) | 90, 109, 1021, 1606 |
| DraI | TTTAAA | 1 cut(s) | 1503 |
| Eam1104I | CTCTTC | 4 cut(s) | 144, 528, 924, 1460 |
| EarI | CTCTTC | 4 cut(s) | 144, 528, 924, 1460 |
| Ecl136II | GAGCTC | 1 cut(s) | 583 |
| Eco105I | TACGTA | 1 cut(s) | 996 |
| Eco130I | CCWWGG | 2 cut(s) | 1460, 1593 |
| Eco24I | GRGCYC | 1 cut(s) | 585 |
| Eco47I | GGWCC | 1 cut(s) | 642 |
| Eco47III | AGCGCT | 1 cut(s) | 1349 |
| Eco53kI | GAGCTC | 1 cut(s) | 583 |
| Eco57I | CTGAAG | 7 cut(s) | 11, 150, 509, 532, 944, 1336, 1764 |
| EcoICRI | GAGCTC | 1 cut(s) | 583 |
| EcoO109I | RGGNCCY | 1 cut(s) | 642 |
| EcoRII | CCWGG | 1 cut(s) | 934 |
| EcoT14I | CCWWGG | 2 cut(s) | 1460, 1593 |
| EcoT38I | GRGCYC | 1 cut(s) | 585 |
| ErhI | CCWWGG | 2 cut(s) | 1460, 1593 |
| FaeI | CATG | 6 cut(s) | 149, 608, 675, 792, 850, 980 |
| FaqI | GGGAC | 3 cut(s) | 119, 1327, 1753 |
| FatI | CATG | 6 cut(s) | 145, 604, 671, 788, 846, 976 |
| FauNDI | CATATG | 1 cut(s) | 490 |
| Fnu4HI | GCNGC | 4 cut(s) | 121, 946, 1243, 1403 |
| FokI | GGATG | 3 cut(s) | 437, 1110, 1114 |
| FriOI | GRGCYC | 1 cut(s) | 585 |
| Fsp4HI | GCNGC | 4 cut(s) | 121, 946, 1243, 1403 |
| FspBI | CTAG | 3 cut(s) | 276, 362, 444 |
| GlaI | GCGC | 1 cut(s) | 1349 |
| GluI | GCNGC | 4 cut(s) | 121, 946, 1243, 1403 |
| GsaI | CCCAGC | 1 cut(s) | 229 |
| HaeII | RGCGCY | 1 cut(s) | 1351 |
| HapII | CCGG | 1 cut(s) | 563 |
| HgaI | GACGC | 1 cut(s) | 951 |
| HhaI | GCGC | 1 cut(s) | 1350 |
| Hin1I | GRCGYC | 1 cut(s) | 1523 |
| Hin1II | CATG | 6 cut(s) | 149, 608, 675, 792, 850, 980 |
| Hin6I | GCGC | 1 cut(s) | 1348 |
| HinP1I | GCGC | 1 cut(s) | 1348 |
| HindIII | AAGCTT | 1 cut(s) | 1661 |
| HinfI | GANTC | 8 cut(s) | 920, 1149, 1214, 1261, 1429, 1468, 1483, 1695 |
| HpaII | CCGG | 1 cut(s) | 563 |
| HphI | GGTGA | 2 cut(s) | 460, 1466 |
| Hpy166II | GTNNAC | 3 cut(s) | 809, 852, 941 |
| Hpy188I | TCNGA | 8 cut(s) | 30, 338, 589, 907, 963, 1436, 1613, 1787 |
| Hpy188III | TCNNGA | 7 cut(s) | 94, 397, 550, 629, 779, 800, 1265 |
| Hpy8I | GTNNAC | 3 cut(s) | 809, 852, 941 |
| Hpy99I | CGWCG | 1 cut(s) | 15 |
| HpyAV | CCTTC | 9 cut(s) | 176, 394, 493, 556, 655, 1091, 1344, 1550, 1643 |
| HpyCH4III | ACNGT | 2 cut(s) | 718, 839 |
| HpyCH4IV | ACGT | 5 cut(s) | 13, 739, 995, 1523, 1677 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 31, 218, 227, 1660 |
| HpyF3I | CTNAG | 8 cut(s) | 356, 588, 798, 813, 1025, 1433, 1610, 1659 |
| HpySE526I | ACGT | 5 cut(s) | 13, 739, 995, 1523, 1677 |
| Hsp92I | GRCGYC | 1 cut(s) | 1523 |
| Hsp92II | CATG | 6 cut(s) | 149, 608, 675, 792, 850, 980 |
| HspAI | GCGC | 1 cut(s) | 1348 |
| Kzo9I | GATC | 4 cut(s) | 90, 109, 1021, 1606 |
| LguI | GCTCTTC | 2 cut(s) | 528, 924 |
| LmnI | GCTCC | 1 cut(s) | 1369 |
| Lsp1109I | GCAGC | 4 cut(s) | 132, 957, 1229, 1389 |
| LweI | GCATC | 2 cut(s) | 184, 327 |
| MaeI | CTAG | 3 cut(s) | 276, 362, 444 |
| MaeII | ACGT | 5 cut(s) | 13, 739, 995, 1523, 1677 |
| MaeIII | GTNAC | 3 cut(s) | 466, 1028, 1390 |
| MalI | GATC | 4 cut(s) | 92, 111, 1023, 1608 |
| MboI | GATC | 4 cut(s) | 90, 109, 1021, 1606 |
| MfeI | CAATTG | 2 cut(s) | 1341, 1703 |
| MflI | RGATCY | 1 cut(s) | 1606 |
| MhlI | GDGCHC | 2 cut(s) | 585, 854 |
| MlyI | GAGTC | 4 cut(s) | 929, 1143, 1477, 1689 |
| MmeI | TCCRAC | 1 cut(s) | 1723 |
| MroXI | GAANNNNTTC | 2 cut(s) | 411, 545 |
| MseI | TTAA | 9 cut(s) | 200, 254, 506, 893, 1185, 1422, 1502, 1529, 1674 |
| MspA1I | CMGCKG | 1 cut(s) | 529 |
| MspCI | CTTAAG | 1 cut(s) | 1421 |
| MspI | CCGG | 1 cut(s) | 563 |
| MspR9I | CCNGG | 1 cut(s) | 936 |
| MunI | CAATTG | 2 cut(s) | 1341, 1703 |
| Mva1269I | GAATGC | 2 cut(s) | 547, 1644 |
| MvaI | CCWGG | 1 cut(s) | 936 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 31, 218, 227, 1660 |
| NdeI | CATATG | 1 cut(s) | 490 |
| NdeII | GATC | 4 cut(s) | 90, 109, 1021, 1606 |
| NlaIII | CATG | 6 cut(s) | 149, 608, 675, 792, 850, 980 |
| NlaIV | GGNNCC | 1 cut(s) | 643 |
| NmuCI | GTSAC | 1 cut(s) | 466 |
| NspI | RCATGY | 4 cut(s) | 608, 675, 792, 850 |
| PaeI | GCATGC | 2 cut(s) | 608, 675 |
| PciI | ACATGT | 2 cut(s) | 788, 846 |
| PciSI | GCTCTTC | 2 cut(s) | 528, 924 |
| PctI | GAATGC | 2 cut(s) | 547, 1644 |
| PdmI | GAANNNNTTC | 2 cut(s) | 411, 545 |
| PfeI | GAWTC | 4 cut(s) | 1214, 1261, 1429, 1483 |
| PkrI | GCNGC | 4 cut(s) | 122, 947, 1244, 1404 |
| PleI | GAGTC | 4 cut(s) | 928, 1143, 1476, 1689 |
| PpsI | GAGTC | 4 cut(s) | 928, 1143, 1476, 1689 |
| Ppu21I | YACGTR | 1 cut(s) | 996 |
| PpuMI | RGGWCCY | 1 cut(s) | 642 |
| PscI | ACATGT | 2 cut(s) | 788, 846 |
| Psp124BI | GAGCTC | 1 cut(s) | 585 |
| Psp5II | RGGWCCY | 1 cut(s) | 642 |
| Psp6I | CCWGG | 1 cut(s) | 934 |
| PspFI | CCCAGC | 1 cut(s) | 225 |
| PspGI | CCWGG | 1 cut(s) | 934 |
| PspN4I | GGNNCC | 1 cut(s) | 643 |
| PspPI | GGNCC | 1 cut(s) | 642 |
| PspPPI | RGGWCCY | 1 cut(s) | 642 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1742 |
| PsuI | RGATCY | 1 cut(s) | 1606 |
| PvuII | CAGCTG | 1 cut(s) | 529 |
| RsaI | GTAC | 3 cut(s) | 738, 998, 1105 |
| RsaNI | GTAC | 3 cut(s) | 737, 997, 1104 |
| SacI | GAGCTC | 1 cut(s) | 585 |
| SapI | GCTCTTC | 2 cut(s) | 528, 924 |
| SaqAI | TTAA | 9 cut(s) | 200, 254, 506, 893, 1185, 1422, 1502, 1529, 1674 |
| SatI | GCNGC | 4 cut(s) | 121, 946, 1243, 1403 |
| Sau3AI | GATC | 4 cut(s) | 90, 109, 1021, 1606 |
| Sau96I | GGNCC | 1 cut(s) | 642 |
| SchI | GAGTC | 4 cut(s) | 929, 1143, 1477, 1689 |
| ScrFI | CCNGG | 1 cut(s) | 936 |
| SduI | GDGCHC | 2 cut(s) | 585, 854 |
| SfaNI | GCATC | 2 cut(s) | 184, 327 |
| SinI | GGWCC | 1 cut(s) | 642 |
| SmlI | CTYRAG | 2 cut(s) | 1079, 1421 |
| SmoI | CTYRAG | 2 cut(s) | 1079, 1421 |
| SnaBI | TACGTA | 1 cut(s) | 996 |
| SphI | GCATGC | 2 cut(s) | 608, 675 |
| SsiI | CCGC | 2 cut(s) | 675, 1331 |
| SspMI | CTAG | 3 cut(s) | 276, 362, 444 |
| SstI | GAGCTC | 1 cut(s) | 585 |
| StyD4I | CCNGG | 1 cut(s) | 934 |
| StyI | CCWWGG | 2 cut(s) | 1460, 1593 |
| TaaI | ACNGT | 2 cut(s) | 718, 839 |
| TaiI | ACGT | 5 cut(s) | 16, 742, 998, 1526, 1680 |
| TaqI | TCGA | 1 cut(s) | 1020 |
| TfiI | GAWTC | 4 cut(s) | 1214, 1261, 1429, 1483 |
| Tru1I | TTAA | 9 cut(s) | 200, 254, 506, 893, 1185, 1422, 1502, 1529, 1674 |
| Tru9I | TTAA | 9 cut(s) | 200, 254, 506, 893, 1185, 1422, 1502, 1529, 1674 |
| TscAI | CASTG | 2 cut(s) | 87, 1360 |
| TseFI | GTSAC | 1 cut(s) | 466 |
| TseI | GCWGC | 4 cut(s) | 120, 945, 1242, 1402 |
| Tsp45I | GTSAC | 1 cut(s) | 466 |
| TspGWI | ACGGA | 3 cut(s) | 388, 712, 1541 |
| TspRI | CASTG | 2 cut(s) | 87, 1360 |
| Vha464I | CTTAAG | 1 cut(s) | 1421 |
| VneI | GTGCAC | 1 cut(s) | 850 |
| VpaK11BI | GGWCC | 1 cut(s) | 642 |
| XapI | RAATTY | 9 cut(s) | 294, 381, 771, 1108, 1155, 1268, 1563, 1600, 1778 |
| XceI | RCATGY | 4 cut(s) | 608, 675, 792, 850 |
| XmnI | GAANNNNTTC | 2 cut(s) | 411, 545 |
| XspI | CTAG | 3 cut(s) | 276, 362, 444 |
| ZraI | GACGTC | 1 cut(s) | 1524 |