TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 23 - 206 | 4.5e-49 | TIR domain |
| TIR_2 | PF13676 | 25 - 121 | 3.5e-17 | TIR domain |
| AAA_16 | PF13191 | 203 - 320 | 2.2e-06 | AAA ATPase domain |
| NB-ARC | PF00931 | 211 - 378 | 1.5e-19 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 445 - 518 | 1.7e-12 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 687 - 788 | 5.2e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 708 - 780 | 1.9e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 803 - 891 | 6.4e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 824 - 933 | 1.5e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| C-JID | PF20160 | 978 - 1110 | 1.1e-14 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 1208, 2811 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2180 |
| AccBSI | CCGCTC | 1 cut(s) | 1336 |
| AccI | GTMKAC | 2 cut(s) | 96, 2608 |
| AccII | CGCG | 1 cut(s) | 882 |
| AciI | CCGC | 7 cut(s) | 103, 584, 699, 1336, 1841, 2413, 3005 |
| AcoI | YGGCCR | 2 cut(s) | 2917, 3072 |
| AcsI | RAATTY | 9 cut(s) | 489, 864, 1278, 1733, 1766, 2017, 2177, 2888, 2946 |
| AfaI | GTAC | 9 cut(s) | 433, 933, 1385, 1458, 1680, 1960, 2731, 3016, 3314 |
| AfeI | AGCGCT | 1 cut(s) | 1034 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 1141, 2110, 2180, 2317, 2456, 2699, 2742 |
| AflII | CTTAAG | 2 cut(s) | 1100, 2270 |
| AflIII | ACRYGT | 1 cut(s) | 880 |
| AjnI | CCWGG | 4 cut(s) | 323, 1829, 2935, 2950 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 970, 1002, 1780, 1812, 1830, 1862 |
| Alw21I | GWGCWC | 2 cut(s) | 14, 213 |
| Alw26I | GTCTC | 5 cut(s) | 347, 1985, 2043, 2343, 3165 |
| Aor51HI | AGCGCT | 1 cut(s) | 1034 |
| AoxI | GGCC | 5 cut(s) | 1189, 2266, 2404, 2917, 3072 |
| ApeKI | GCWGC | 3 cut(s) | 2082, 2556, 3083 |
| ApoI | RAATTY | 9 cut(s) | 489, 864, 1278, 1733, 1766, 2017, 2177, 2888, 2946 |
| AseI | ATTAAT | 2 cut(s) | 1176, 2862 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1770 |
| AspLEI | GCGC | 1 cut(s) | 1035 |
| AsuHPI | GGTGA | 3 cut(s) | 463, 1481, 1559 |
| AsuII | TTCGAA | 2 cut(s) | 1418, 3231 |
| AxyI | CCTNAGG | 1 cut(s) | 1140 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 1670, 1703, 2767, 2767, 2800, 2800 |
| BalI | TGGCCA | 2 cut(s) | 2919, 3074 |
| BanII | GRGCYC | 3 cut(s) | 213, 2705, 3304 |
| BbsI | GAAGAC | 3 cut(s) | 546, 2463, 2645 |
| Bbv12I | GWGCWC | 2 cut(s) | 14, 213 |
| BbvI | GCAGC | 3 cut(s) | 2069, 2543, 3070 |
| BccI | CCATC | 6 cut(s) | 67, 688, 2701, 2764, 2783, 3016 |
| BceAI | ACGGC | 2 cut(s) | 1425, 2241 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1336, 1370 |
| BciT130I | CCWGG | 4 cut(s) | 325, 1831, 2937, 2952 |
| BciVI | GTATCC | 2 cut(s) | 127, 493 |
| BclI | TGATCA | 1 cut(s) | 426 |
| BcoDI | GTCTC | 5 cut(s) | 347, 1985, 2043, 2343, 3165 |
| BfmI | CTRYAG | 1 cut(s) | 2385 |
| BfoI | RGCGCY | 1 cut(s) | 1036 |
| BfrI | CTTAAG | 2 cut(s) | 1100, 2270 |
| BfuI | GTATCC | 2 cut(s) | 127, 493 |
| BglII | AGATCT | 1 cut(s) | 1469 |
| BisI | GCNGC | 4 cut(s) | 700, 2083, 2557, 3084 |
| BlsI | GCNGC | 4 cut(s) | 701, 2084, 2558, 3085 |
| Bme1390I | CCNGG | 4 cut(s) | 325, 1831, 2937, 2952 |
| BmiI | GGNNCC | 1 cut(s) | 1835 |
| BmrFI | CCNGG | 4 cut(s) | 325, 1831, 2937, 2952 |
| BmsI | GCATC | 8 cut(s) | 38, 1078, 1234, 1497, 1854, 2371, 2615, 3235 |
| BpiI | GAAGAC | 3 cut(s) | 546, 2463, 2645 |
| Bpu14I | TTCGAA | 2 cut(s) | 1418, 3231 |
| BpuEI | CTTGAG | 7 cut(s) | 227, 650, 865, 1804, 1880, 2009, 2150 |
| Bsa29I | ATCGAT | 2 cut(s) | 1929, 2787 |
| BsaI | GGTCTC | 1 cut(s) | 3165 |
| BsaJI | CCNNGG | 5 cut(s) | 148, 1714, 2838, 2935, 2951 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 1141, 2110, 2180, 2317, 2456, 2699, 2742 |
| Bse118I | RCCGGY | 1 cut(s) | 340 |
| Bse1I | ACTGG | 3 cut(s) | 1684, 2781, 3026 |
| Bse21I | CCTNAGG | 1 cut(s) | 1140 |
| Bse3DI | GCAATG | 1 cut(s) | 2832 |
| BseBI | CCWGG | 4 cut(s) | 325, 1831, 2937, 2952 |
| BseCI | ATCGAT | 2 cut(s) | 1929, 2787 |
| BseDI | CCNNGG | 5 cut(s) | 148, 1714, 2838, 2935, 2951 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 1141, 2110, 2180, 2317, 2456, 2699, 2742 |
| BseMI | GCAATG | 1 cut(s) | 2832 |
| BseMII | CTCAG | 4 cut(s) | 1131, 1712, 2912, 2922 |
| BseNI | ACTGG | 3 cut(s) | 1684, 2781, 3026 |
| BseRI | GAGGAG | 6 cut(s) | 204, 422, 1466, 1688, 2439, 3276 |
| BseXI | GCAGC | 3 cut(s) | 2069, 2543, 3070 |
| BseYI | CCCAGC | 1 cut(s) | 3025 |
| BsgI | GTGCAG | 1 cut(s) | 1094 |
| Bsh1236I | CGCG | 1 cut(s) | 882 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2232 |
| BshFI | GGCC | 5 cut(s) | 1191, 2268, 2406, 2919, 3074 |
| BshVI | ATCGAT | 2 cut(s) | 1929, 2787 |
| BsiEI | CGRYCG | 1 cut(s) | 2232 |
| BsiHKAI | GWGCWC | 2 cut(s) | 14, 213 |
| BsiSI | CCGG | 1 cut(s) | 341 |
| BslFI | GGGAC | 4 cut(s) | 2236, 2408, 2548, 2991 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 1141, 2110, 2180, 2317, 2456, 2699, 2742 |
| BsmAI | GTCTC | 5 cut(s) | 347, 1985, 2043, 2343, 3165 |
| BsmBI | CGTCTC | 2 cut(s) | 1985, 2043 |
| BsmFI | GGGAC | 4 cut(s) | 2236, 2408, 2548, 2991 |
| BsmI | GAATGC | 1 cut(s) | 888 |
| BsnI | GGCC | 5 cut(s) | 1191, 2268, 2406, 2919, 3074 |
| Bso31I | GGTCTC | 1 cut(s) | 3165 |
| Bsp119I | TTCGAA | 2 cut(s) | 1418, 3231 |
| Bsp1286I | GDGCHC | 4 cut(s) | 14, 213, 2705, 3304 |
| Bsp1407I | TGTACA | 1 cut(s) | 3312 |
| Bsp19I | CCATGG | 1 cut(s) | 1714 |
| BspACI | CCGC | 7 cut(s) | 103, 584, 699, 1336, 1841, 2413, 3005 |
| BspANI | GGCC | 5 cut(s) | 1191, 2268, 2406, 2919, 3074 |
| BspCNI | CTCAG | 4 cut(s) | 1132, 1713, 2911, 2921 |
| BspDI | ATCGAT | 2 cut(s) | 1929, 2787 |
| BspFNI | CGCG | 1 cut(s) | 882 |
| BspHI | TCATGA | 1 cut(s) | 1614 |
| BspLI | GGNNCC | 1 cut(s) | 1835 |
| BspQI | GCTCTTC | 1 cut(s) | 1337 |
| BspT104I | TTCGAA | 2 cut(s) | 1418, 3231 |
| BspTI | CTTAAG | 2 cut(s) | 1100, 2270 |
| BspTNI | GGTCTC | 1 cut(s) | 3165 |
| BsrBI | CCGCTC | 1 cut(s) | 1336 |
| BsrDI | GCAATG | 1 cut(s) | 2832 |
| BsrFI | RCCGGY | 1 cut(s) | 340 |
| BsrGI | TGTACA | 1 cut(s) | 3312 |
| BsrI | ACTGG | 3 cut(s) | 1684, 2781, 3026 |
| BssAI | RCCGGY | 1 cut(s) | 340 |
| BssECI | CCNNGG | 5 cut(s) | 148, 1714, 2838, 2935, 2951 |
| BssT1I | CCWWGG | 3 cut(s) | 148, 1714, 2838 |
| Bst2UI | CCWGG | 4 cut(s) | 325, 1831, 2937, 2952 |
| Bst4CI | ACNGT | 2 cut(s) | 3134, 3286 |
| Bst6I | CTCTTC | 2 cut(s) | 1337, 2694 |
| BstAFI | CTTAAG | 2 cut(s) | 1100, 2270 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2625 |
| BstAUI | TGTACA | 1 cut(s) | 3312 |
| BstBI | TTCGAA | 2 cut(s) | 1418, 3231 |
| BstC8I | GCNNGC | 4 cut(s) | 1037, 1115, 1119, 1661 |
| BstDSI | CCRYGG | 1 cut(s) | 1714 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2740 |
| BstFNI | CGCG | 1 cut(s) | 882 |
| BstH2I | RGCGCY | 1 cut(s) | 1036 |
| BstHHI | GCGC | 1 cut(s) | 1035 |
| BstMAI | GTCTC | 5 cut(s) | 347, 1985, 2043, 2343, 3165 |
| BstMCI | CGRYCG | 1 cut(s) | 2232 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 705, 1643, 2088, 2412, 2625, 3004, 3080, 3316 |
| BstNI | CCWGG | 4 cut(s) | 325, 1831, 2937, 2952 |
| BstNSI | RCATGY | 2 cut(s) | 1121, 1368 |
| BstSCI | CCNGG | 4 cut(s) | 323, 1829, 2935, 2950 |
| BstSFI | CTRYAG | 1 cut(s) | 2385 |
| BstUI | CGCG | 1 cut(s) | 882 |
| BstV1I | GCAGC | 3 cut(s) | 2069, 2543, 3070 |
| BstV2I | GAAGAC | 3 cut(s) | 546, 2463, 2645 |
| BstX2I | RGATCY | 6 cut(s) | 1469, 1999, 2028, 2581, 2752, 3055 |
| BstYI | RGATCY | 6 cut(s) | 1469, 1999, 2028, 2581, 2752, 3055 |
| Bsu15I | ATCGAT | 2 cut(s) | 1929, 2787 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1140 |
| BsuI | GTATCC | 2 cut(s) | 127, 493 |
| BsuRI | GGCC | 5 cut(s) | 1191, 2268, 2406, 2919, 3074 |
| BsuTUI | ATCGAT | 2 cut(s) | 1929, 2787 |
| BtgI | CCRYGG | 1 cut(s) | 1714 |
| BtsIMutI | CAGTG | 3 cut(s) | 1691, 3291, 3344 |
| Cac8I | GCNNGC | 4 cut(s) | 1037, 1115, 1119, 1661 |
| CciI | TCATGA | 1 cut(s) | 1614 |
| CfoI | GCGC | 1 cut(s) | 1035 |
| Cfr10I | RCCGGY | 1 cut(s) | 340 |
| ClaI | ATCGAT | 2 cut(s) | 1929, 2787 |
| CsiI | ACCWGGT | 1 cut(s) | 1829 |
| Csp6I | GTAC | 9 cut(s) | 432, 932, 1384, 1457, 1679, 1959, 2730, 3015, 3313 |
| CviQI | GTAC | 9 cut(s) | 432, 932, 1384, 1457, 1679, 1959, 2730, 3015, 3313 |
| DraI | TTTAAA | 1 cut(s) | 1126 |
| EaeI | YGGCCR | 2 cut(s) | 2917, 3072 |
| Eam1104I | CTCTTC | 2 cut(s) | 1337, 2694 |
| EarI | CTCTTC | 2 cut(s) | 1337, 2694 |
| EciI | GGCGGA | 1 cut(s) | 2994 |
| Ecl136II | GAGCTC | 1 cut(s) | 211 |
| Eco130I | CCWWGG | 3 cut(s) | 148, 1714, 2838 |
| Eco24I | GRGCYC | 3 cut(s) | 213, 2705, 3304 |
| Eco31I | GGTCTC | 1 cut(s) | 3165 |
| Eco32I | GATATC | 1 cut(s) | 2539 |
| Eco47III | AGCGCT | 1 cut(s) | 1034 |
| Eco53kI | GAGCTC | 1 cut(s) | 211 |
| Eco81I | CCTNAGG | 1 cut(s) | 1140 |
| EcoICRI | GAGCTC | 1 cut(s) | 211 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2740 |
| EcoRI | GAATTC | 1 cut(s) | 1733 |
| EcoRII | CCWGG | 4 cut(s) | 323, 1829, 2935, 2950 |
| EcoRV | GATATC | 1 cut(s) | 2539 |
| EcoT14I | CCWWGG | 3 cut(s) | 148, 1714, 2838 |
| EcoT22I | ATGCAT | 2 cut(s) | 317, 1512 |
| EcoT38I | GRGCYC | 3 cut(s) | 213, 2705, 3304 |
| ErhI | CCWWGG | 3 cut(s) | 148, 1714, 2838 |
| Esp3I | CGTCTC | 2 cut(s) | 1985, 2043 |
| FaqI | GGGAC | 4 cut(s) | 2236, 2408, 2548, 2991 |
| FauI | CCCGC | 3 cut(s) | 110, 591, 1329 |
| FbaI | TGATCA | 1 cut(s) | 426 |
| FblI | GTMKAC | 2 cut(s) | 96, 2608 |
| Fnu4HI | GCNGC | 4 cut(s) | 700, 2083, 2557, 3084 |
| FriOI | GRGCYC | 3 cut(s) | 213, 2705, 3304 |
| Fsp4HI | GCNGC | 4 cut(s) | 700, 2083, 2557, 3084 |
| GlaI | GCGC | 1 cut(s) | 1034 |
| GluI | GCNGC | 4 cut(s) | 700, 2083, 2557, 3084 |
| GsaI | CCCAGC | 1 cut(s) | 3029 |
| HaeII | RGCGCY | 1 cut(s) | 1036 |
| HaeIII | GGCC | 5 cut(s) | 1191, 2268, 2406, 2919, 3074 |
| HapII | CCGG | 1 cut(s) | 341 |
| HhaI | GCGC | 1 cut(s) | 1035 |
| Hin6I | GCGC | 1 cut(s) | 1033 |
| HinP1I | GCGC | 1 cut(s) | 1033 |
| HincII | GTYRAC | 1 cut(s) | 1571 |
| HindII | GTYRAC | 1 cut(s) | 1571 |
| HindIII | AAGCTT | 2 cut(s) | 827, 2636 |
| HpaII | CCGG | 1 cut(s) | 341 |
| HphI | GGTGA | 3 cut(s) | 463, 1481, 1559 |
| Hpy166II | GTNNAC | 7 cut(s) | 97, 1259, 1386, 1571, 1681, 2522, 2609 |
| Hpy188I | TCNGA | 8 cut(s) | 64, 367, 381, 614, 2163, 2380, 2658, 3172 |
| Hpy8I | GTNNAC | 7 cut(s) | 97, 1259, 1386, 1571, 1681, 2522, 2609 |
| HpyCH4III | ACNGT | 2 cut(s) | 3134, 3286 |
| HpyCH4IV | ACGT | 1 cut(s) | 1994 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 705, 1643, 2088, 2412, 2625, 3004, 3080, 3316 |
| HpySE526I | ACGT | 1 cut(s) | 1994 |
| HspAI | GCGC | 1 cut(s) | 1033 |
| Ksp22I | TGATCA | 1 cut(s) | 426 |
| LguI | GCTCTTC | 1 cut(s) | 1337 |
| LmnI | GCTCC | 6 cut(s) | 191, 216, 409, 1716, 1872, 2185 |
| Lsp1109I | GCAGC | 3 cut(s) | 2069, 2543, 3070 |
| LweI | GCATC | 8 cut(s) | 38, 1078, 1234, 1497, 1854, 2371, 2615, 3235 |
| MabI | ACCWGGT | 1 cut(s) | 1829 |
| MaeII | ACGT | 1 cut(s) | 1994 |
| MaeIII | GTNAC | 5 cut(s) | 1015, 1547, 2147, 3134, 3142 |
| MbiI | CCGCTC | 1 cut(s) | 1336 |
| MfeI | CAATTG | 4 cut(s) | 243, 1495, 1638, 2250 |
| MflI | RGATCY | 6 cut(s) | 1469, 1999, 2028, 2581, 2752, 3055 |
| MhlI | GDGCHC | 4 cut(s) | 14, 213, 2705, 3304 |
| MlsI | TGGCCA | 2 cut(s) | 2919, 3074 |
| MluI | ACGCGT | 1 cut(s) | 880 |
| MluNI | TGGCCA | 2 cut(s) | 2919, 3074 |
| MlyI | GAGTC | 5 cut(s) | 1562, 1571, 1934, 2443, 2807 |
| MmeI | TCCRAC | 7 cut(s) | 390, 592, 1069, 1313, 1850, 1861, 1977 |
| Mox20I | TGGCCA | 2 cut(s) | 2919, 3074 |
| Mph1103I | ATGCAT | 2 cut(s) | 317, 1512 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1770 |
| MscI | TGGCCA | 2 cut(s) | 2919, 3074 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1505 |
| Msp20I | TGGCCA | 2 cut(s) | 2919, 3074 |
| MspA1I | CMGCKG | 2 cut(s) | 2415, 3083 |
| MspCI | CTTAAG | 2 cut(s) | 1100, 2270 |
| MspI | CCGG | 1 cut(s) | 341 |
| MspR9I | CCNGG | 4 cut(s) | 325, 1831, 2937, 2952 |
| MunI | CAATTG | 4 cut(s) | 243, 1495, 1638, 2250 |
| Mva1269I | GAATGC | 1 cut(s) | 888 |
| MvaI | CCWGG | 4 cut(s) | 325, 1831, 2937, 2952 |
| MvnI | CGCG | 1 cut(s) | 882 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 705, 1643, 2088, 2412, 2625, 3004, 3080, 3316 |
| NcoI | CCATGG | 1 cut(s) | 1714 |
| NlaIV | GGNNCC | 1 cut(s) | 1835 |
| NmuCI | GTSAC | 4 cut(s) | 1015, 1547, 2147, 3142 |
| NsiI | ATGCAT | 2 cut(s) | 317, 1512 |
| NspI | RCATGY | 2 cut(s) | 1121, 1368 |
| NspV | TTCGAA | 2 cut(s) | 1418, 3231 |
| PaeI | GCATGC | 1 cut(s) | 1121 |
| PagI | TCATGA | 1 cut(s) | 1614 |
| PciSI | GCTCTTC | 1 cut(s) | 1337 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1935 |
| PctI | GAATGC | 1 cut(s) | 888 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1770 |
| PflFI | GACNNNGTC | 1 cut(s) | 545 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2180 |
| PkrI | GCNGC | 4 cut(s) | 701, 2084, 2558, 3085 |
| Ple19I | CGATCG | 1 cut(s) | 2232 |
| PleI | GAGTC | 5 cut(s) | 1561, 1570, 1934, 2442, 2806 |
| PpsI | GAGTC | 5 cut(s) | 1561, 1570, 1934, 2442, 2806 |
| PshBI | ATTAAT | 2 cut(s) | 1176, 2862 |
| PsiI | TTATAA | 2 cut(s) | 1208, 2811 |
| Psp124BI | GAGCTC | 1 cut(s) | 213 |
| Psp6I | CCWGG | 4 cut(s) | 323, 1829, 2935, 2950 |
| PspFI | CCCAGC | 1 cut(s) | 3025 |
| PspGI | CCWGG | 4 cut(s) | 323, 1829, 2935, 2950 |
| PspN4I | GGNNCC | 1 cut(s) | 1835 |
| PsuI | RGATCY | 6 cut(s) | 1469, 1999, 2028, 2581, 2752, 3055 |
| PsyI | GACNNNGTC | 1 cut(s) | 545 |
| PvuI | CGATCG | 1 cut(s) | 2232 |
| PvuII | CAGCTG | 1 cut(s) | 3083 |
| RsaI | GTAC | 9 cut(s) | 433, 933, 1385, 1458, 1680, 1960, 2731, 3016, 3314 |
| RsaNI | GTAC | 9 cut(s) | 432, 932, 1384, 1457, 1679, 1959, 2730, 3015, 3313 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1505 |
| SacI | GAGCTC | 1 cut(s) | 213 |
| SapI | GCTCTTC | 1 cut(s) | 1337 |
| SatI | GCNGC | 4 cut(s) | 700, 2083, 2557, 3084 |
| SchI | GAGTC | 5 cut(s) | 1562, 1571, 1934, 2443, 2807 |
| ScrFI | CCNGG | 4 cut(s) | 325, 1831, 2937, 2952 |
| SduI | GDGCHC | 4 cut(s) | 14, 213, 2705, 3304 |
| SexAI | ACCWGGT | 1 cut(s) | 1829 |
| SfaNI | GCATC | 8 cut(s) | 38, 1078, 1234, 1497, 1854, 2371, 2615, 3235 |
| SfcI | CTRYAG | 1 cut(s) | 2385 |
| SfuI | TTCGAA | 2 cut(s) | 1418, 3231 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1505 |
| SmlI | CTYRAG | 9 cut(s) | 206, 629, 844, 1100, 1783, 1859, 1988, 2129, 2270 |
| SmoI | CTYRAG | 9 cut(s) | 206, 629, 844, 1100, 1783, 1859, 1988, 2129, 2270 |
| SphI | GCATGC | 1 cut(s) | 1121 |
| SsiI | CCGC | 7 cut(s) | 103, 584, 699, 1336, 1841, 2413, 3005 |
| SspI | AATATT | 1 cut(s) | 3112 |
| SstI | GAGCTC | 1 cut(s) | 213 |
| StyD4I | CCNGG | 4 cut(s) | 323, 1829, 2935, 2950 |
| StyI | CCWWGG | 3 cut(s) | 148, 1714, 2838 |
| TaaI | ACNGT | 2 cut(s) | 3134, 3286 |
| TaiI | ACGT | 1 cut(s) | 1997 |
| TatI | WGTACW | 4 cut(s) | 1383, 1456, 2729, 3312 |
| TauI | GCSGC | 1 cut(s) | 702 |
| TscAI | CASTG | 3 cut(s) | 1691, 3291, 3351 |
| TseFI | GTSAC | 4 cut(s) | 1015, 1547, 2147, 3142 |
| TseI | GCWGC | 3 cut(s) | 2082, 2556, 3083 |
| Tsp45I | GTSAC | 4 cut(s) | 1015, 1547, 2147, 3142 |
| TspGWI | ACGGA | 4 cut(s) | 616, 1276, 1646, 1800 |
| TspRI | CASTG | 3 cut(s) | 1691, 3291, 3351 |
| Tth111I | GACNNNGTC | 1 cut(s) | 545 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2180 |
| Vha464I | CTTAAG | 2 cut(s) | 1100, 2270 |
| VspI | ATTAAT | 2 cut(s) | 1176, 2862 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2740 |
| XapI | RAATTY | 9 cut(s) | 489, 864, 1278, 1733, 1766, 2017, 2177, 2888, 2946 |
| XbaI | TCTAGA | 1 cut(s) | 2350 |
| XceI | RCATGY | 2 cut(s) | 1121, 1368 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 283 |
| XmiI | GTMKAC | 2 cut(s) | 96, 2608 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1770 |
| Zsp2I | ATGCAT | 2 cut(s) | 317, 1512 |