TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| NB-ARC | PF00931 | 11 - 164 | 7.5e-23 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 232 - 302 | 2.8e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 548 - 617 | 8.3e-08 | Leucine-rich repeat region |
| C-JID | PF20160 | 764 - 896 | 1.7e-08 | C-JID domain |
| C-JID | PF20160 | 927 - 1054 | 1.5e-06 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1139 |
| Acc36I | ACCTGC | 1 cut(s) | 505 |
| AccB1I | GGYRCC | 1 cut(s) | 2353 |
| AccI | GTMKAC | 1 cut(s) | 2585 |
| AccII | CGCG | 2 cut(s) | 118, 3185 |
| AccIII | TCCGGA | 2 cut(s) | 2578, 2602 |
| AciI | CCGC | 5 cut(s) | 980, 1898, 2242, 2499, 3056 |
| AcoI | YGGCCR | 1 cut(s) | 3177 |
| AcuI | CTGAAG | 4 cut(s) | 1094, 1725, 2234, 2442 |
| AcyI | GRCGYC | 1 cut(s) | 2354 |
| AfaI | GTAC | 9 cut(s) | 225, 1366, 2284, 2668, 2675, 2773, 2959, 3134, 3152 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 503, 739 |
| AflII | CTTAAG | 1 cut(s) | 563 |
| AflIII | ACRYGT | 1 cut(s) | 1883 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 893 |
| AjnI | CCWGG | 6 cut(s) | 919, 2293, 2308, 2482, 2782, 3167 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 696, 728, 1551, 1583 |
| AleI | CACNNNNGTG | 2 cut(s) | 2547, 3036 |
| Alw26I | GTCTC | 4 cut(s) | 412, 1176, 2331, 2341 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 623 |
| Ama87I | CYCGRG | 1 cut(s) | 2431 |
| Aor13HI | TCCGGA | 2 cut(s) | 2578, 2602 |
| AoxI | GGCC | 4 cut(s) | 547, 1111, 2979, 3177 |
| ApeKI | GCWGC | 6 cut(s) | 1376, 1503, 1692, 1983, 1986, 3105 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2606, 2638 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 186, 1658 |
| AspLEI | GCGC | 2 cut(s) | 2064, 2356 |
| AspS9I | GGNCC | 5 cut(s) | 547, 1112, 1141, 3085, 3139 |
| AsuHPI | GGTGA | 5 cut(s) | 1616, 2456, 2534, 3023, 3136 |
| AsuII | TTCGAA | 2 cut(s) | 2567, 2808 |
| AvaI | CYCGRG | 1 cut(s) | 2431 |
| AvaII | GGWCC | 3 cut(s) | 1141, 3085, 3139 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2995, 3028 |
| BalI | TGGCCA | 1 cut(s) | 3179 |
| BamHI | GGATCC | 2 cut(s) | 1994, 2599 |
| BanI | GGYRCC | 1 cut(s) | 2353 |
| BbsI | GAAGAC | 7 cut(s) | 86, 892, 1115, 1414, 1445, 2013, 2835 |
| BbvI | GCAGC | 6 cut(s) | 1363, 1490, 1679, 1970, 1998, 3117 |
| BccI | CCATC | 8 cut(s) | 233, 677, 1171, 1396, 1876, 2129, 2180, 2872 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 352, 386, 437, 471, 914, 948 |
| BciT130I | CCWGG | 6 cut(s) | 921, 2295, 2310, 2484, 2784, 3169 |
| BciVI | GTATCC | 1 cut(s) | 1170 |
| BclI | TGATCA | 2 cut(s) | 646, 1234 |
| BcoDI | GTCTC | 4 cut(s) | 412, 1176, 2331, 2341 |
| BfaI | CTAG | 5 cut(s) | 287, 398, 770, 1700, 2814 |
| BfmI | CTRYAG | 3 cut(s) | 498, 1984, 2237 |
| BfoI | RGCGCY | 1 cut(s) | 2357 |
| BfrI | CTTAAG | 1 cut(s) | 563 |
| BfuAI | ACCTGC | 1 cut(s) | 505 |
| BfuI | GTATCC | 1 cut(s) | 1170 |
| BglII | AGATCT | 2 cut(s) | 198, 3227 |
| BisI | GCNGC | 6 cut(s) | 1377, 1504, 1693, 1984, 1987, 3106 |
| BlpI | GCTNAGC | 1 cut(s) | 624 |
| BlsI | GCNGC | 6 cut(s) | 1378, 1505, 1694, 1985, 1988, 3107 |
| BmcAI | AGTACT | 2 cut(s) | 2284, 2773 |
| Bme1390I | CCNGG | 6 cut(s) | 921, 2295, 2310, 2484, 2784, 3169 |
| Bme18I | GGWCC | 3 cut(s) | 1141, 3085, 3139 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 893 |
| BmeT110I | CYCGRG | 1 cut(s) | 2431 |
| BmgT120I | GGNCC | 5 cut(s) | 547, 1112, 1141, 3085, 3139 |
| BmrFI | CCNGG | 6 cut(s) | 921, 2295, 2310, 2484, 2784, 3169 |
| BmsI | GCATC | 4 cut(s) | 1228, 2073, 2091, 3100 |
| BpiI | GAAGAC | 7 cut(s) | 86, 892, 1115, 1414, 1445, 2013, 2835 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2071, 2103 |
| BpmI | CTGGAG | 1 cut(s) | 354 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 624 |
| Bpu14I | TTCGAA | 2 cut(s) | 2567, 2808 |
| BpuEI | CTTGAG | 4 cut(s) | 719, 1067, 1361, 1799 |
| BsaAI | YACGTR | 1 cut(s) | 2874 |
| BsaBI | GATNNNNATC | 1 cut(s) | 303 |
| BsaHI | GRCGYC | 1 cut(s) | 2354 |
| BsaJI | CCNNGG | 5 cut(s) | 543, 920, 1914, 2309, 3167 |
| BsaWI | WCCGGW | 4 cut(s) | 1636, 2578, 2602, 3207 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 3189, 3219 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 503, 739 |
| Bse118I | RCCGGY | 1 cut(s) | 1192 |
| Bse1I | ACTGG | 3 cut(s) | 324, 350, 2502 |
| Bse8I | GATNNNNATC | 1 cut(s) | 303 |
| BseAI | TCCGGA | 2 cut(s) | 2578, 2602 |
| BseBI | CCWGG | 6 cut(s) | 921, 2295, 2310, 2484, 2784, 3169 |
| BseDI | CCNNGG | 5 cut(s) | 543, 920, 1914, 2309, 3167 |
| BseGI | GGATG | 3 cut(s) | 748, 1384, 2883 |
| BseJI | GATNNNNATC | 1 cut(s) | 303 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 503, 739 |
| BseMII | CTCAG | 9 cut(s) | 615, 682, 1287, 1338, 1417, 1622, 2355, 2649, 2847 |
| BseNI | ACTGG | 3 cut(s) | 324, 350, 2502 |
| BseXI | GCAGC | 6 cut(s) | 1363, 1490, 1679, 1970, 1998, 3117 |
| BsgI | GTGCAG | 3 cut(s) | 636, 1966, 2759 |
| Bsh1236I | CGCG | 2 cut(s) | 118, 3185 |
| BshFI | GGCC | 4 cut(s) | 549, 1113, 2981, 3179 |
| BshNI | GGYRCC | 1 cut(s) | 2353 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2431 |
| BsiSI | CCGG | 5 cut(s) | 1193, 1637, 2579, 2603, 3208 |
| BslFI | GGGAC | 1 cut(s) | 1297 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 503, 739 |
| BsmAI | GTCTC | 4 cut(s) | 412, 1176, 2331, 2341 |
| BsmFI | GGGAC | 1 cut(s) | 1297 |
| BsmI | GAATGC | 1 cut(s) | 2727 |
| BsnI | GGCC | 4 cut(s) | 549, 1113, 2981, 3179 |
| BsoBI | CYCGRG | 1 cut(s) | 2431 |
| Bsp119I | TTCGAA | 2 cut(s) | 2567, 2808 |
| Bsp13I | TCCGGA | 2 cut(s) | 2578, 2602 |
| Bsp1407I | TGTACA | 2 cut(s) | 1364, 2673 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 624 |
| BspACI | CCGC | 5 cut(s) | 980, 1898, 2242, 2499, 3056 |
| BspANI | GGCC | 4 cut(s) | 549, 1113, 2981, 3179 |
| BspCNI | CTCAG | 9 cut(s) | 616, 681, 1288, 1337, 1416, 1623, 2354, 2648, 2846 |
| BspEI | TCCGGA | 2 cut(s) | 2578, 2602 |
| BspFNI | CGCG | 2 cut(s) | 118, 3185 |
| BspHI | TCATGA | 2 cut(s) | 801, 3233 |
| BspMAI | CTGCAG | 2 cut(s) | 502, 1988 |
| BspMI | ACCTGC | 1 cut(s) | 505 |
| BspT104I | TTCGAA | 2 cut(s) | 2567, 2808 |
| BspT107I | GGYRCC | 1 cut(s) | 2353 |
| BspTI | CTTAAG | 1 cut(s) | 563 |
| BsrFI | RCCGGY | 1 cut(s) | 1192 |
| BsrGI | TGTACA | 2 cut(s) | 1364, 2673 |
| BsrI | ACTGG | 3 cut(s) | 324, 350, 2502 |
| BssAI | RCCGGY | 1 cut(s) | 1192 |
| BssECI | CCNNGG | 5 cut(s) | 543, 920, 1914, 2309, 3167 |
| BssNAI | GTATAC | 1 cut(s) | 2586 |
| BssNI | GRCGYC | 1 cut(s) | 2354 |
| BssT1I | CCWWGG | 2 cut(s) | 543, 1914 |
| Bst1107I | GTATAC | 1 cut(s) | 2586 |
| Bst2UI | CCWGG | 6 cut(s) | 921, 2295, 2310, 2484, 2784, 3169 |
| Bst4CI | ACNGT | 9 cut(s) | 519, 851, 1907, 2029, 2116, 2167, 2287, 2776, 3008 |
| Bst6I | CTCTTC | 2 cut(s) | 1023, 1179 |
| BstACI | GRCGYC | 1 cut(s) | 2354 |
| BstAFI | CTTAAG | 1 cut(s) | 563 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 3163 |
| BstAUI | TGTACA | 2 cut(s) | 1364, 2673 |
| BstBAI | YACGTR | 1 cut(s) | 2874 |
| BstBI | TTCGAA | 2 cut(s) | 2567, 2808 |
| BstC8I | GCNNGC | 4 cut(s) | 1016, 1583, 1792, 2330 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 501 |
| BstF5I | GGATG | 3 cut(s) | 748, 1384, 2883 |
| BstFNI | CGCG | 2 cut(s) | 118, 3185 |
| BstH2I | RGCGCY | 1 cut(s) | 2357 |
| BstHHI | GCGC | 2 cut(s) | 2064, 2356 |
| BstMAI | GTCTC | 4 cut(s) | 412, 1176, 2331, 2341 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 1216, 1709, 1810, 2351, 3163 |
| BstNI | CCWGG | 6 cut(s) | 921, 2295, 2310, 2484, 2784, 3169 |
| BstNSI | RCATGY | 3 cut(s) | 729, 1585, 1887 |
| BstSCI | CCNGG | 6 cut(s) | 919, 2293, 2308, 2482, 2782, 3167 |
| BstSFI | CTRYAG | 3 cut(s) | 498, 1984, 2237 |
| BstUI | CGCG | 2 cut(s) | 118, 3185 |
| BstV1I | GCAGC | 6 cut(s) | 1363, 1490, 1679, 1970, 1998, 3117 |
| BstV2I | GAAGAC | 7 cut(s) | 86, 892, 1115, 1414, 1445, 2013, 2835 |
| BstX2I | RGATCY | 7 cut(s) | 198, 575, 1756, 1930, 1994, 2599, 3227 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 2720, 3175 |
| BstYI | RGATCY | 7 cut(s) | 198, 575, 1756, 1930, 1994, 2599, 3227 |
| BstZ17I | GTATAC | 1 cut(s) | 2586 |
| BsuI | GTATCC | 1 cut(s) | 1170 |
| BsuRI | GGCC | 4 cut(s) | 549, 1113, 2981, 3179 |
| BtgZI | GCGATG | 1 cut(s) | 3123 |
| BtsCI | GGATG | 3 cut(s) | 748, 1384, 2883 |
| BtsIMutI | CAGTG | 2 cut(s) | 1628, 2841 |
| BveI | ACCTGC | 1 cut(s) | 505 |
| Cac8I | GCNNGC | 4 cut(s) | 1016, 1583, 1792, 2330 |
| CaiI | CAGNNNCTG | 1 cut(s) | 623 |
| CciI | TCATGA | 2 cut(s) | 801, 3233 |
| CfoI | GCGC | 2 cut(s) | 2064, 2356 |
| Cfr10I | RCCGGY | 1 cut(s) | 1192 |
| Cfr13I | GGNCC | 5 cut(s) | 547, 1112, 1141, 3085, 3139 |
| CseI | GACGC | 1 cut(s) | 107 |
| Csp6I | GTAC | 9 cut(s) | 224, 1365, 2283, 2667, 2674, 2772, 2958, 3133, 3151 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1923, 1958 |
| CviQI | GTAC | 9 cut(s) | 224, 1365, 2283, 2667, 2674, 2772, 2958, 3133, 3151 |
| DinI | GGCGCC | 1 cut(s) | 2355 |
| DraI | TTTAAA | 3 cut(s) | 1824, 2050, 2514 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1139 |
| DriI | GACNNNNNGTC | 1 cut(s) | 893 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1139 |
| EaeI | YGGCCR | 1 cut(s) | 3177 |
| Eam1104I | CTCTTC | 2 cut(s) | 1023, 1179 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 893 |
| EarI | CTCTTC | 2 cut(s) | 1023, 1179 |
| Eco130I | CCWWGG | 2 cut(s) | 543, 1914 |
| Eco47I | GGWCC | 3 cut(s) | 1141, 3085, 3139 |
| Eco57I | CTGAAG | 4 cut(s) | 1094, 1725, 2234, 2442 |
| Eco88I | CYCGRG | 1 cut(s) | 2431 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 501 |
| EcoO109I | RGGNCCY | 3 cut(s) | 547, 1112, 1141 |
| EcoRI | GAATTC | 1 cut(s) | 2606 |
| EcoRII | CCWGG | 6 cut(s) | 919, 2293, 2308, 2482, 2782, 3167 |
| EcoT14I | CCWWGG | 2 cut(s) | 543, 1914 |
| EcoT22I | ATGCAT | 2 cut(s) | 864, 3115 |
| EgeI | GGCGCC | 1 cut(s) | 2355 |
| EheI | GGCGCC | 1 cut(s) | 2355 |
| ErhI | CCWWGG | 2 cut(s) | 543, 1914 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 171, 203 |
| FaqI | GGGAC | 1 cut(s) | 1297 |
| FauI | CCCGC | 2 cut(s) | 973, 2506 |
| FauNDI | CATATG | 1 cut(s) | 1059 |
| FbaI | TGATCA | 2 cut(s) | 646, 1234 |
| FblI | GTMKAC | 1 cut(s) | 2585 |
| Fnu4HI | GCNGC | 6 cut(s) | 1377, 1504, 1693, 1984, 1987, 3106 |
| FokI | GGATG | 3 cut(s) | 755, 1371, 2890 |
| Fsp4HI | GCNGC | 6 cut(s) | 1377, 1504, 1693, 1984, 1987, 3106 |
| FspBI | CTAG | 5 cut(s) | 287, 398, 770, 1700, 2814 |
| GlaI | GCGC | 2 cut(s) | 2063, 2355 |
| GluI | GCNGC | 6 cut(s) | 1377, 1504, 1693, 1984, 1987, 3106 |
| GsuI | CTGGAG | 1 cut(s) | 354 |
| HaeII | RGCGCY | 1 cut(s) | 2357 |
| HaeIII | GGCC | 4 cut(s) | 549, 1113, 2981, 3179 |
| HapII | CCGG | 5 cut(s) | 1193, 1637, 2579, 2603, 3208 |
| HgaI | GACGC | 1 cut(s) | 107 |
| HhaI | GCGC | 2 cut(s) | 2064, 2356 |
| Hin1I | GRCGYC | 1 cut(s) | 2354 |
| Hin6I | GCGC | 2 cut(s) | 2062, 2354 |
| HinP1I | GCGC | 2 cut(s) | 2062, 2354 |
| HincII | GTYRAC | 2 cut(s) | 834, 1272 |
| HindII | GTYRAC | 2 cut(s) | 834, 1272 |
| HpaI | GTTAAC | 1 cut(s) | 834 |
| HpaII | CCGG | 5 cut(s) | 1193, 1637, 2579, 2603, 3208 |
| HphI | GGTGA | 5 cut(s) | 1616, 2456, 2534, 3023, 3136 |
| Hpy166II | GTNNAC | 5 cut(s) | 103, 834, 1272, 2586, 3088 |
| Hpy8I | GTNNAC | 5 cut(s) | 103, 834, 1272, 2586, 3088 |
| HpyCH4III | ACNGT | 9 cut(s) | 519, 851, 1907, 2029, 2116, 2167, 2287, 2776, 3008 |
| HpyCH4IV | ACGT | 1 cut(s) | 2873 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 1216, 1709, 1810, 2351, 3163 |
| HpySE526I | ACGT | 1 cut(s) | 2873 |
| Hsp92I | GRCGYC | 1 cut(s) | 2354 |
| HspAI | GCGC | 2 cut(s) | 2062, 2354 |
| KasI | GGCGCC | 1 cut(s) | 2353 |
| Kpn2I | TCCGGA | 2 cut(s) | 2578, 2602 |
| Ksp22I | TGATCA | 2 cut(s) | 646, 1234 |
| KspAI | GTTAAC | 1 cut(s) | 834 |
| LmnI | GCTCC | 5 cut(s) | 643, 1709, 2079, 2627, 3210 |
| Lsp1109I | GCAGC | 6 cut(s) | 1363, 1490, 1679, 1970, 1998, 3117 |
| LweI | GCATC | 4 cut(s) | 1228, 2073, 2091, 3100 |
| MaeI | CTAG | 5 cut(s) | 287, 398, 770, 1700, 2814 |
| MaeII | ACGT | 1 cut(s) | 2873 |
| MaeIII | GTNAC | 4 cut(s) | 373, 506, 947, 1891 |
| MfeI | CAATTG | 1 cut(s) | 3220 |
| MflI | RGATCY | 7 cut(s) | 198, 575, 1756, 1930, 1994, 2599, 3227 |
| MlsI | TGGCCA | 1 cut(s) | 3179 |
| MluNI | TGGCCA | 1 cut(s) | 3179 |
| Mly113I | GGCGCC | 1 cut(s) | 2354 |
| MlyI | GAGTC | 6 cut(s) | 914, 1459, 1642, 2333, 2627, 2825 |
| MmeI | TCCRAC | 3 cut(s) | 452, 501, 2954 |
| Mox20I | TGGCCA | 1 cut(s) | 3179 |
| Mph1103I | ATGCAT | 2 cut(s) | 864, 3115 |
| MroI | TCCGGA | 2 cut(s) | 2578, 2602 |
| MroXI | GAANNNNTTC | 2 cut(s) | 186, 1658 |
| MscI | TGGCCA | 1 cut(s) | 3179 |
| MslI | CAYNNNNRTG | 4 cut(s) | 2547, 2732, 2798, 3036 |
| Msp20I | TGGCCA | 1 cut(s) | 3179 |
| MspA1I | CMGCKG | 1 cut(s) | 2242 |
| MspCI | CTTAAG | 1 cut(s) | 563 |
| MspI | CCGG | 5 cut(s) | 1193, 1637, 2579, 2603, 3208 |
| MspR9I | CCNGG | 6 cut(s) | 921, 2295, 2310, 2484, 2784, 3169 |
| MssI | GTTTAAAC | 1 cut(s) | 1824 |
| MunI | CAATTG | 1 cut(s) | 3220 |
| Mva1269I | GAATGC | 1 cut(s) | 2727 |
| MvaI | CCWGG | 6 cut(s) | 921, 2295, 2310, 2484, 2784, 3169 |
| MvnI | CGCG | 2 cut(s) | 118, 3185 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 1216, 1709, 1810, 2351, 3163 |
| NarI | GGCGCC | 1 cut(s) | 2354 |
| NdeI | CATATG | 1 cut(s) | 1059 |
| NmuCI | GTSAC | 2 cut(s) | 947, 1891 |
| NsiI | ATGCAT | 2 cut(s) | 864, 3115 |
| NspI | RCATGY | 3 cut(s) | 729, 1585, 1887 |
| NspV | TTCGAA | 2 cut(s) | 2567, 2808 |
| OliI | CACNNNNGTG | 2 cut(s) | 2547, 3036 |
| PaeI | GCATGC | 1 cut(s) | 1585 |
| PagI | TCATGA | 2 cut(s) | 801, 3233 |
| PciI | ACATGT | 1 cut(s) | 1883 |
| PctI | GAATGC | 1 cut(s) | 2727 |
| PdmI | GAANNNNTTC | 2 cut(s) | 186, 1658 |
| PfeI | GAWTC | 7 cut(s) | 1042, 1087, 1336, 1351, 1475, 1530, 2907 |
| PflFI | GACNNNGTC | 1 cut(s) | 1309 |
| PfoI | TCCNGGA | 2 cut(s) | 2293, 2782 |
| PkrI | GCNGC | 6 cut(s) | 1378, 1505, 1694, 1985, 1988, 3107 |
| PleI | GAGTC | 6 cut(s) | 913, 1458, 1641, 2333, 2627, 2825 |
| PluTI | GGCGCC | 1 cut(s) | 2357 |
| PmeI | GTTTAAAC | 1 cut(s) | 1824 |
| PpsI | GAGTC | 6 cut(s) | 913, 1458, 1641, 2333, 2627, 2825 |
| Ppu21I | YACGTR | 1 cut(s) | 2874 |
| PpuMI | RGGWCCY | 1 cut(s) | 1141 |
| PscI | ACATGT | 1 cut(s) | 1883 |
| Psp5II | RGGWCCY | 1 cut(s) | 1141 |
| Psp6I | CCWGG | 6 cut(s) | 919, 2293, 2308, 2482, 2782, 3167 |
| PspGI | CCWGG | 6 cut(s) | 919, 2293, 2308, 2482, 2782, 3167 |
| PspPI | GGNCC | 5 cut(s) | 547, 1112, 1141, 3085, 3139 |
| PspPPI | RGGWCCY | 1 cut(s) | 1141 |
| PstI | CTGCAG | 2 cut(s) | 502, 1988 |
| PstNI | CAGNNNCTG | 1 cut(s) | 623 |
| PsuI | RGATCY | 7 cut(s) | 198, 575, 1756, 1930, 1994, 2599, 3227 |
| PsyI | GACNNNGTC | 1 cut(s) | 1309 |
| RsaI | GTAC | 9 cut(s) | 225, 1366, 2284, 2668, 2675, 2773, 2959, 3134, 3152 |
| RsaNI | GTAC | 9 cut(s) | 224, 1365, 2283, 2667, 2674, 2772, 2958, 3133, 3151 |
| RseI | CAYNNNNRTG | 4 cut(s) | 2547, 2732, 2798, 3036 |
| SatI | GCNGC | 6 cut(s) | 1377, 1504, 1693, 1984, 1987, 3106 |
| Sau96I | GGNCC | 5 cut(s) | 547, 1112, 1141, 3085, 3139 |
| ScaI | AGTACT | 2 cut(s) | 2284, 2773 |
| SchI | GAGTC | 6 cut(s) | 914, 1459, 1642, 2333, 2627, 2825 |
| ScrFI | CCNGG | 6 cut(s) | 921, 2295, 2310, 2484, 2784, 3169 |
| SfaNI | GCATC | 4 cut(s) | 1228, 2073, 2091, 3100 |
| SfcI | CTRYAG | 3 cut(s) | 498, 1984, 2237 |
| SfoI | GGCGCC | 1 cut(s) | 2355 |
| SfuI | TTCGAA | 2 cut(s) | 2567, 2808 |
| SinI | GGWCC | 3 cut(s) | 1141, 3085, 3139 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 2547, 2732, 2798, 3036 |
| SmlI | CTYRAG | 5 cut(s) | 563, 734, 1082, 1340, 1814 |
| SmoI | CTYRAG | 5 cut(s) | 563, 734, 1082, 1340, 1814 |
| SphI | GCATGC | 1 cut(s) | 1585 |
| SsiI | CCGC | 5 cut(s) | 980, 1898, 2242, 2499, 3056 |
| SspDI | GGCGCC | 1 cut(s) | 2353 |
| SspMI | CTAG | 5 cut(s) | 287, 398, 770, 1700, 2814 |
| StyD4I | CCNGG | 6 cut(s) | 919, 2293, 2308, 2482, 2782, 3167 |
| StyI | CCWWGG | 2 cut(s) | 543, 1914 |
| TaaI | ACNGT | 9 cut(s) | 519, 851, 1907, 2029, 2116, 2167, 2287, 2776, 3008 |
| TaiI | ACGT | 1 cut(s) | 2876 |
| TaqI | TCGA | 8 cut(s) | 717, 1146, 2071, 2089, 2567, 2613, 2808, 2947 |
| TatI | WGTACW | 5 cut(s) | 1364, 2282, 2673, 2771, 2957 |
| TfiI | GAWTC | 7 cut(s) | 1042, 1087, 1336, 1351, 1475, 1530, 2907 |
| TscAI | CASTG | 2 cut(s) | 1635, 2841 |
| TseFI | GTSAC | 2 cut(s) | 947, 1891 |
| TseI | GCWGC | 6 cut(s) | 1376, 1503, 1692, 1983, 1986, 3105 |
| Tsp45I | GTSAC | 2 cut(s) | 947, 1891 |
| TspGWI | ACGGA | 6 cut(s) | 543, 887, 1732, 2612, 2654, 3131 |
| TspRI | CASTG | 2 cut(s) | 1635, 2841 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1309 |
| Vha464I | CTTAAG | 1 cut(s) | 563 |
| VpaK11BI | GGWCC | 3 cut(s) | 1141, 3085, 3139 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 501 |
| XceI | RCATGY | 3 cut(s) | 729, 1585, 1887 |
| XmiI | GTMKAC | 1 cut(s) | 2585 |
| XmnI | GAANNNNTTC | 2 cut(s) | 186, 1658 |
| XspI | CTAG | 5 cut(s) | 287, 398, 770, 1700, 2814 |
| ZrmI | AGTACT | 2 cut(s) | 2284, 2773 |
| Zsp2I | ATGCAT | 2 cut(s) | 864, 3115 |