TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 18 - 194 | 7.6e-55 | TIR domain |
| TIR_2 | PF13676 | 21 - 124 | 7.7e-16 | TIR domain |
| NB-ARC | PF00931 | 212 - 367 | 8.8e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 436 - 504 | 1.1e-19 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 668 - 776 | 9.6e-14 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 695 - 781 | 3.1e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 773 - 824 | 2.7e-06 | Leucine-rich repeat region |
| C-JID | PF20160 | 847 - 1003 | 8.4e-17 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 866, 1145 |
| AarI | CACCTGC | 1 cut(s) | 1521 |
| AatII | GACGTC | 1 cut(s) | 645 |
| Acc36I | ACCTGC | 1 cut(s) | 1521 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1486, 2578 |
| AccI | GTMKAC | 3 cut(s) | 781, 1711, 2213 |
| AccII | CGCG | 3 cut(s) | 1509, 2910, 2949 |
| AccIII | TCCGGA | 1 cut(s) | 1851 |
| AciI | CCGC | 5 cut(s) | 646, 672, 1507, 2947, 3005 |
| AclWI | GGATC | 3 cut(s) | 152, 338, 2796 |
| AcsI | RAATTY | 6 cut(s) | 288, 481, 585, 731, 1263, 2550 |
| AcuI | CTGAAG | 5 cut(s) | 1055, 1131, 1392, 1614, 2201 |
| AcyI | GRCGYC | 1 cut(s) | 642 |
| AfaI | GTAC | 7 cut(s) | 357, 1182, 2058, 2076, 2564, 2746, 2868 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 867, 1486, 2578, 2683, 3143 |
| AflIII | ACRYGT | 1 cut(s) | 1567 |
| AjnI | CCWGG | 6 cut(s) | 1996, 2539, 2608, 2642, 2899, 3142 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 564, 596 |
| Alw21I | GWGCWC | 1 cut(s) | 2814 |
| Alw26I | GTCTC | 2 cut(s) | 1024, 2241 |
| Alw44I | GTGCAC | 1 cut(s) | 2810 |
| AlwI | GGATC | 3 cut(s) | 152, 338, 2796 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1810 |
| Ama87I | CYCGRG | 1 cut(s) | 1949 |
| Aor13HI | TCCGGA | 1 cut(s) | 1851 |
| AoxI | GGCC | 3 cut(s) | 828, 2894, 3043 |
| ApaLI | GTGCAC | 1 cut(s) | 2810 |
| ApeKI | GCWGC | 5 cut(s) | 203, 322, 601, 1810, 2602 |
| ApoI | RAATTY | 6 cut(s) | 288, 481, 585, 731, 1263, 2550 |
| AseI | ATTAAT | 3 cut(s) | 1698, 1890, 2718 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1091, 1119 |
| AspLEI | GCGC | 1 cut(s) | 2912 |
| AspS9I | GGNCC | 2 cut(s) | 2894, 3044 |
| AsuC2I | CCSGG | 1 cut(s) | 1527 |
| AsuHPI | GGTGA | 2 cut(s) | 2475, 2561 |
| AvaI | CYCGRG | 1 cut(s) | 1949 |
| BaeGI | GKGCMC | 2 cut(s) | 2421, 2814 |
| BauI | CACGAG | 1 cut(s) | 720 |
| BbsI | GAAGAC | 4 cut(s) | 1462, 1563, 2267, 2673 |
| Bbv12I | GWGCWC | 1 cut(s) | 2814 |
| BbvI | GCAGC | 5 cut(s) | 190, 309, 613, 1797, 2589 |
| BccI | CCATC | 2 cut(s) | 1417, 2626 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1379, 1413 |
| BciT130I | CCWGG | 6 cut(s) | 1998, 2541, 2610, 2644, 2901, 3144 |
| BciVI | GTATCC | 2 cut(s) | 1779, 2954 |
| BcnI | CCSGG | 1 cut(s) | 1527 |
| BcoDI | GTCTC | 2 cut(s) | 1024, 2241 |
| BfaI | CTAG | 6 cut(s) | 578, 993, 1325, 2054, 2217, 3081 |
| BfmI | CTRYAG | 1 cut(s) | 2595 |
| BfuAI | ACCTGC | 1 cut(s) | 1521 |
| BfuI | GTATCC | 2 cut(s) | 1779, 2954 |
| BglII | AGATCT | 3 cut(s) | 1207, 1430, 2311 |
| BisI | GCNGC | 5 cut(s) | 204, 323, 602, 1811, 2603 |
| BlsI | GCNGC | 5 cut(s) | 205, 324, 603, 1812, 2604 |
| BmcAI | AGTACT | 1 cut(s) | 1182 |
| Bme1390I | CCNGG | 7 cut(s) | 1527, 1998, 2541, 2610, 2644, 2901, 3144 |
| BmeT110I | CYCGRG | 1 cut(s) | 1949 |
| BmgT120I | GGNCC | 2 cut(s) | 2894, 3044 |
| BmiI | GGNNCC | 2 cut(s) | 856, 2895 |
| BmrFI | CCNGG | 7 cut(s) | 1527, 1998, 2541, 2610, 2644, 2901, 3144 |
| BmrI | ACTGGG | 2 cut(s) | 1193, 1250 |
| BmsI | GCATC | 4 cut(s) | 1455, 2614, 2992, 3061 |
| BmuI | ACTGGG | 2 cut(s) | 1193, 1250 |
| BpiI | GAAGAC | 4 cut(s) | 1462, 1563, 2267, 2673 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 703, 735, 1888, 1920 |
| BpmI | CTGGAG | 2 cut(s) | 174, 460 |
| BpuEI | CTTGAG | 1 cut(s) | 577 |
| BpuMI | CCSGG | 1 cut(s) | 1527 |
| BsaAI | YACGTR | 1 cut(s) | 2078 |
| BsaBI | GATNNNNATC | 2 cut(s) | 342, 2316 |
| BsaHI | GRCGYC | 1 cut(s) | 642 |
| BsaJI | CCNNGG | 2 cut(s) | 1996, 3142 |
| BsaWI | WCCGGW | 1 cut(s) | 1851 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 867, 1486, 2578, 2683, 3143 |
| Bse1I | ACTGG | 4 cut(s) | 636, 1188, 1245, 2194 |
| Bse3DI | GCAATG | 4 cut(s) | 88, 1329, 2532, 3025 |
| Bse8I | GATNNNNATC | 2 cut(s) | 342, 2316 |
| BseAI | TCCGGA | 1 cut(s) | 1851 |
| BseBI | CCWGG | 6 cut(s) | 1998, 2541, 2610, 2644, 2901, 3144 |
| BseDI | CCNNGG | 2 cut(s) | 1996, 3142 |
| BseGI | GGATG | 9 cut(s) | 160, 280, 640, 1470, 2474, 2605, 2637, 2941, 3100 |
| BseJI | GATNNNNATC | 2 cut(s) | 342, 2316 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 867, 1486, 2578, 2683, 3143 |
| BseMI | GCAATG | 4 cut(s) | 88, 1329, 2532, 3025 |
| BseMII | CTCAG | 5 cut(s) | 59, 59, 1817, 1854, 1886 |
| BseNI | ACTGG | 4 cut(s) | 636, 1188, 1245, 2194 |
| BseRI | GAGGAG | 2 cut(s) | 2413, 3023 |
| BseSI | GKGCMC | 2 cut(s) | 2421, 2814 |
| BseXI | GCAGC | 5 cut(s) | 190, 309, 613, 1797, 2589 |
| BsgI | GTGCAG | 1 cut(s) | 1555 |
| Bsh1236I | CGCG | 3 cut(s) | 1509, 2910, 2949 |
| BshFI | GGCC | 3 cut(s) | 830, 2896, 3045 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2814 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1949 |
| BsiSI | CCGG | 2 cut(s) | 1526, 1852 |
| BslFI | GGGAC | 3 cut(s) | 1503, 2865, 3119 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 867, 1486, 2578, 2683, 3143 |
| BsmAI | GTCTC | 2 cut(s) | 1024, 2241 |
| BsmBI | CGTCTC | 1 cut(s) | 1024 |
| BsmFI | GGGAC | 3 cut(s) | 1503, 2865, 3119 |
| BsmI | GAATGC | 3 cut(s) | 302, 1091, 2226 |
| BsnI | GGCC | 3 cut(s) | 830, 2896, 3045 |
| BsoBI | CYCGRG | 1 cut(s) | 1949 |
| Bsp1286I | GDGCHC | 2 cut(s) | 2421, 2814 |
| Bsp13I | TCCGGA | 1 cut(s) | 1851 |
| Bsp143I | GATC | 9 cut(s) | 157, 343, 1207, 1294, 1360, 1430, 2311, 2502, 2788 |
| BspACI | CCGC | 5 cut(s) | 646, 672, 1507, 2947, 3005 |
| BspANI | GGCC | 3 cut(s) | 830, 2896, 3045 |
| BspCNI | CTCAG | 5 cut(s) | 58, 60, 1816, 1855, 1887 |
| BspEI | TCCGGA | 1 cut(s) | 1851 |
| BspFNI | CGCG | 3 cut(s) | 1509, 2910, 2949 |
| BspLI | GGNNCC | 2 cut(s) | 856, 2895 |
| BspMI | ACCTGC | 1 cut(s) | 1521 |
| BspPI | GGATC | 3 cut(s) | 152, 338, 2796 |
| BsrDI | GCAATG | 4 cut(s) | 88, 1329, 2532, 3025 |
| BsrI | ACTGG | 4 cut(s) | 636, 1188, 1245, 2194 |
| BssECI | CCNNGG | 2 cut(s) | 1996, 3142 |
| BssMI | GATC | 9 cut(s) | 157, 343, 1207, 1294, 1360, 1430, 2311, 2502, 2788 |
| BssNI | GRCGYC | 1 cut(s) | 642 |
| BssSI | CACGAG | 1 cut(s) | 720 |
| Bst2BI | CACGAG | 1 cut(s) | 720 |
| Bst2UI | CCWGG | 6 cut(s) | 1998, 2541, 2610, 2644, 2901, 3144 |
| Bst4CI | ACNGT | 7 cut(s) | 319, 1444, 2026, 2235, 2481, 2596, 2816 |
| Bst6I | CTCTTC | 6 cut(s) | 1074, 1198, 1217, 1240, 1302, 2445 |
| BstACI | GRCGYC | 1 cut(s) | 642 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1474 |
| BstBAI | YACGTR | 1 cut(s) | 2078 |
| BstC8I | GCNNGC | 1 cut(s) | 2737 |
| BstDEI | CTNAG | 9 cut(s) | 45, 68, 1211, 1460, 1803, 1863, 1895, 2781, 2915 |
| BstEII | GGTNACC | 1 cut(s) | 1103 |
| BstF5I | GGATG | 9 cut(s) | 160, 280, 640, 1470, 2474, 2605, 2637, 2941, 3100 |
| BstFNI | CGCG | 3 cut(s) | 1509, 2910, 2949 |
| BstHHI | GCGC | 1 cut(s) | 2912 |
| BstKTI | GATC | 9 cut(s) | 160, 346, 1210, 1297, 1363, 1433, 2314, 2505, 2791 |
| BstMAI | GTCTC | 2 cut(s) | 1024, 2241 |
| BstMBI | GATC | 9 cut(s) | 157, 343, 1207, 1294, 1360, 1430, 2311, 2502, 2788 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 78, 1474, 2736, 3024, 3095 |
| BstNI | CCWGG | 6 cut(s) | 1998, 2541, 2610, 2644, 2901, 3144 |
| BstNSI | RCATGY | 2 cut(s) | 1338, 1571 |
| BstPI | GGTNACC | 1 cut(s) | 1103 |
| BstSCI | CCNGG | 7 cut(s) | 1525, 1996, 2539, 2608, 2642, 2899, 3142 |
| BstSFI | CTRYAG | 1 cut(s) | 2595 |
| BstSLI | GKGCMC | 2 cut(s) | 2421, 2814 |
| BstUI | CGCG | 3 cut(s) | 1509, 2910, 2949 |
| BstV1I | GCAGC | 5 cut(s) | 190, 309, 613, 1797, 2589 |
| BstV2I | GAAGAC | 4 cut(s) | 1462, 1563, 2267, 2673 |
| BstX2I | RGATCY | 3 cut(s) | 1207, 1430, 2311 |
| BstYI | RGATCY | 3 cut(s) | 1207, 1430, 2311 |
| BsuI | GTATCC | 2 cut(s) | 1779, 2954 |
| BsuRI | GGCC | 3 cut(s) | 830, 2896, 3045 |
| BtgZI | GCGATG | 1 cut(s) | 1404 |
| BtsCI | GGATG | 9 cut(s) | 160, 280, 640, 1470, 2474, 2605, 2637, 2941, 3100 |
| BtsI | GCAGTG | 2 cut(s) | 117, 2290 |
| BtsIMutI | CAGTG | 5 cut(s) | 53, 117, 324, 2187, 2290 |
| BveI | ACCTGC | 1 cut(s) | 1521 |
| Cac8I | GCNNGC | 1 cut(s) | 2737 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1810 |
| CfoI | GCGC | 1 cut(s) | 2912 |
| Cfr13I | GGNCC | 2 cut(s) | 2894, 3044 |
| Csp6I | GTAC | 7 cut(s) | 356, 1181, 2057, 2075, 2563, 2745, 2867 |
| CviQI | GTAC | 7 cut(s) | 356, 1181, 2057, 2075, 2563, 2745, 2867 |
| DdeI | CTNAG | 9 cut(s) | 45, 68, 1211, 1460, 1803, 1863, 1895, 2781, 2915 |
| DpnI | GATC | 9 cut(s) | 159, 345, 1209, 1296, 1362, 1432, 2313, 2504, 2790 |
| DpnII | GATC | 9 cut(s) | 157, 343, 1207, 1294, 1360, 1430, 2311, 2502, 2788 |
| DraI | TTTAAA | 3 cut(s) | 933, 1933, 2298 |
| Eam1104I | CTCTTC | 6 cut(s) | 1074, 1198, 1217, 1240, 1302, 2445 |
| EarI | CTCTTC | 6 cut(s) | 1074, 1198, 1217, 1240, 1302, 2445 |
| Eco32I | GATATC | 1 cut(s) | 2851 |
| Eco57I | CTGAAG | 5 cut(s) | 1055, 1131, 1392, 1614, 2201 |
| Eco88I | CYCGRG | 1 cut(s) | 1949 |
| Eco91I | GGTNACC | 1 cut(s) | 1103 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3044 |
| EcoO65I | GGTNACC | 1 cut(s) | 1103 |
| EcoRI | GAATTC | 3 cut(s) | 288, 481, 585 |
| EcoRII | CCWGG | 6 cut(s) | 1996, 2539, 2608, 2642, 2899, 3142 |
| EcoRV | GATATC | 1 cut(s) | 2851 |
| EcoT22I | ATGCAT | 2 cut(s) | 256, 302 |
| Esp3I | CGTCTC | 1 cut(s) | 1024 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1107, 1139 |
| FaqI | GGGAC | 3 cut(s) | 1503, 2865, 3119 |
| FauI | CCCGC | 1 cut(s) | 665 |
| FblI | GTMKAC | 3 cut(s) | 781, 1711, 2213 |
| Fnu4HI | GCNGC | 5 cut(s) | 204, 323, 602, 1811, 2603 |
| FokI | GGATG | 9 cut(s) | 167, 287, 647, 1477, 2481, 2592, 2644, 2948, 3087 |
| Fsp4HI | GCNGC | 5 cut(s) | 204, 323, 602, 1811, 2603 |
| FspBI | CTAG | 6 cut(s) | 578, 993, 1325, 2054, 2217, 3081 |
| GlaI | GCGC | 1 cut(s) | 2911 |
| GluI | GCNGC | 5 cut(s) | 204, 323, 602, 1811, 2603 |
| GsuI | CTGGAG | 2 cut(s) | 174, 460 |
| HaeIII | GGCC | 3 cut(s) | 830, 2896, 3045 |
| HapII | CCGG | 2 cut(s) | 1526, 1852 |
| HhaI | GCGC | 1 cut(s) | 2912 |
| Hin1I | GRCGYC | 1 cut(s) | 642 |
| Hin6I | GCGC | 1 cut(s) | 2910 |
| HinP1I | GCGC | 1 cut(s) | 2910 |
| HincII | GTYRAC | 4 cut(s) | 261, 1918, 1993, 2128 |
| HindII | GTYRAC | 4 cut(s) | 261, 1918, 1993, 2128 |
| HindIII | AAGCTT | 3 cut(s) | 2171, 2336, 2384 |
| HpaI | GTTAAC | 1 cut(s) | 2128 |
| HpaII | CCGG | 2 cut(s) | 1526, 1852 |
| HphI | GGTGA | 2 cut(s) | 2475, 2561 |
| HpyAV | CCTTC | 9 cut(s) | 397, 752, 854, 1033, 1598, 1961, 2176, 2893, 2926 |
| HpyCH4III | ACNGT | 7 cut(s) | 319, 1444, 2026, 2235, 2481, 2596, 2816 |
| HpyCH4IV | ACGT | 3 cut(s) | 642, 2077, 2210 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 78, 1474, 2736, 3024, 3095 |
| HpyF3I | CTNAG | 9 cut(s) | 45, 68, 1211, 1460, 1803, 1863, 1895, 2781, 2915 |
| HpySE526I | ACGT | 3 cut(s) | 642, 2077, 2210 |
| Hsp92I | GRCGYC | 1 cut(s) | 642 |
| HspAI | GCGC | 1 cut(s) | 2910 |
| Kpn2I | TCCGGA | 1 cut(s) | 1851 |
| KspAI | GTTAAC | 1 cut(s) | 2128 |
| Kzo9I | GATC | 9 cut(s) | 157, 343, 1207, 1294, 1360, 1430, 2311, 2502, 2788 |
| LmnI | GCTCC | 5 cut(s) | 179, 854, 1482, 2542, 3010 |
| Lsp1109I | GCAGC | 5 cut(s) | 190, 309, 613, 1797, 2589 |
| LweI | GCATC | 4 cut(s) | 1455, 2614, 2992, 3061 |
| MaeI | CTAG | 6 cut(s) | 578, 993, 1325, 2054, 2217, 3081 |
| MaeII | ACGT | 3 cut(s) | 642, 2077, 2210 |
| MaeIII | GTNAC | 8 cut(s) | 563, 881, 1103, 1253, 1286, 1366, 1898, 2481 |
| MalI | GATC | 9 cut(s) | 159, 345, 1209, 1296, 1362, 1432, 2313, 2504, 2790 |
| MboI | GATC | 9 cut(s) | 157, 343, 1207, 1294, 1360, 1430, 2311, 2502, 2788 |
| MfeI | CAATTG | 2 cut(s) | 207, 2927 |
| MflI | RGATCY | 3 cut(s) | 1207, 1430, 2311 |
| MhlI | GDGCHC | 2 cut(s) | 2421, 2814 |
| MlyI | GAGTC | 3 cut(s) | 1613, 1637, 1906 |
| MmeI | TCCRAC | 2 cut(s) | 562, 2766 |
| Mph1103I | ATGCAT | 2 cut(s) | 256, 302 |
| MroI | TCCGGA | 1 cut(s) | 1851 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1091, 1119 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1613, 2817, 3057 |
| MspI | CCGG | 2 cut(s) | 1526, 1852 |
| MspR9I | CCNGG | 7 cut(s) | 1527, 1998, 2541, 2610, 2644, 2901, 3144 |
| MunI | CAATTG | 2 cut(s) | 207, 2927 |
| Mva1269I | GAATGC | 3 cut(s) | 302, 1091, 2226 |
| MvaI | CCWGG | 6 cut(s) | 1998, 2541, 2610, 2644, 2901, 3144 |
| MvnI | CGCG | 3 cut(s) | 1509, 2910, 2949 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 78, 1474, 2736, 3024, 3095 |
| NciI | CCSGG | 1 cut(s) | 1527 |
| NdeII | GATC | 9 cut(s) | 157, 343, 1207, 1294, 1360, 1430, 2311, 2502, 2788 |
| NlaIV | GGNNCC | 2 cut(s) | 856, 2895 |
| NmuCI | GTSAC | 3 cut(s) | 881, 1898, 2481 |
| NsiI | ATGCAT | 2 cut(s) | 256, 302 |
| NspI | RCATGY | 2 cut(s) | 1338, 1571 |
| PaeR7I | CTCGAG | 1 cut(s) | 1949 |
| PaqCI | CACCTGC | 1 cut(s) | 1521 |
| PciI | ACATGT | 1 cut(s) | 1567 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 396, 1769 |
| PctI | GAATGC | 3 cut(s) | 302, 1091, 2226 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1091, 1119 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1486, 2578 |
| PfoI | TCCNGGA | 1 cut(s) | 2539 |
| PkrI | GCNGC | 5 cut(s) | 205, 324, 603, 1812, 2604 |
| PleI | GAGTC | 3 cut(s) | 1613, 1636, 1905 |
| PpsI | GAGTC | 3 cut(s) | 1613, 1636, 1905 |
| Ppu21I | YACGTR | 1 cut(s) | 2078 |
| PscI | ACATGT | 1 cut(s) | 1567 |
| PshBI | ATTAAT | 3 cut(s) | 1698, 1890, 2718 |
| PsiI | TTATAA | 2 cut(s) | 866, 1145 |
| Psp6I | CCWGG | 6 cut(s) | 1996, 2539, 2608, 2642, 2899, 3142 |
| PspEI | GGTNACC | 1 cut(s) | 1103 |
| PspGI | CCWGG | 6 cut(s) | 1996, 2539, 2608, 2642, 2899, 3142 |
| PspN4I | GGNNCC | 2 cut(s) | 856, 2895 |
| PspPI | GGNCC | 2 cut(s) | 2894, 3044 |
| PspXI | VCTCGAGB | 1 cut(s) | 1949 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1810 |
| PsuI | RGATCY | 3 cut(s) | 1207, 1430, 2311 |
| RsaI | GTAC | 7 cut(s) | 357, 1182, 2058, 2076, 2564, 2746, 2868 |
| RsaNI | GTAC | 7 cut(s) | 356, 1181, 2057, 2075, 2563, 2745, 2867 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1613, 2817, 3057 |
| SatI | GCNGC | 5 cut(s) | 204, 323, 602, 1811, 2603 |
| Sau3AI | GATC | 9 cut(s) | 157, 343, 1207, 1294, 1360, 1430, 2311, 2502, 2788 |
| Sau96I | GGNCC | 2 cut(s) | 2894, 3044 |
| ScaI | AGTACT | 1 cut(s) | 1182 |
| SchI | GAGTC | 3 cut(s) | 1613, 1637, 1906 |
| ScrFI | CCNGG | 7 cut(s) | 1527, 1998, 2541, 2610, 2644, 2901, 3144 |
| SduI | GDGCHC | 2 cut(s) | 2421, 2814 |
| SfaNI | GCATC | 4 cut(s) | 1455, 2614, 2992, 3061 |
| SfcI | CTRYAG | 1 cut(s) | 2595 |
| Sfr274I | CTCGAG | 1 cut(s) | 1949 |
| SlaI | CTCGAG | 1 cut(s) | 1949 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1613, 2817, 3057 |
| SmlI | CTYRAG | 2 cut(s) | 592, 1949 |
| SmoI | CTYRAG | 2 cut(s) | 592, 1949 |
| SsiI | CCGC | 5 cut(s) | 646, 672, 1507, 2947, 3005 |
| SspI | AATATT | 2 cut(s) | 938, 1320 |
| SspMI | CTAG | 6 cut(s) | 578, 993, 1325, 2054, 2217, 3081 |
| StyD4I | CCNGG | 7 cut(s) | 1525, 1996, 2539, 2608, 2642, 2899, 3142 |
| TaaI | ACNGT | 7 cut(s) | 319, 1444, 2026, 2235, 2481, 2596, 2816 |
| TaiI | ACGT | 3 cut(s) | 645, 2080, 2213 |
| TaqI | TCGA | 7 cut(s) | 342, 906, 1363, 1654, 1815, 1950, 2448 |
| TatI | WGTACW | 3 cut(s) | 1180, 2056, 2866 |
| TscAI | CASTG | 5 cut(s) | 53, 124, 324, 2194, 2290 |
| TseFI | GTSAC | 3 cut(s) | 881, 1898, 2481 |
| TseI | GCWGC | 5 cut(s) | 203, 322, 601, 1810, 2602 |
| Tsp45I | GTSAC | 3 cut(s) | 881, 1898, 2481 |
| TspGWI | ACGGA | 4 cut(s) | 754, 867, 1761, 1762 |
| TspRI | CASTG | 5 cut(s) | 53, 124, 324, 2194, 2290 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1486, 2578 |
| VneI | GTGCAC | 1 cut(s) | 2810 |
| VspI | ATTAAT | 3 cut(s) | 1698, 1890, 2718 |
| XapI | RAATTY | 6 cut(s) | 288, 481, 585, 731, 1263, 2550 |
| XbaI | TCTAGA | 1 cut(s) | 1324 |
| XceI | RCATGY | 2 cut(s) | 1338, 1571 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 959 |
| XhoI | CTCGAG | 1 cut(s) | 1949 |
| XmiI | GTMKAC | 3 cut(s) | 781, 1711, 2213 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1091, 1119 |
| XspI | CTAG | 6 cut(s) | 578, 993, 1325, 2054, 2217, 3081 |
| ZraI | GACGTC | 1 cut(s) | 643 |
| ZrmI | AGTACT | 1 cut(s) | 1182 |
| Zsp2I | ATGCAT | 2 cut(s) | 256, 302 |