TMV resistance protein N-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 110 |
| Acc36I | ACCTGC | 1 cut(s) | 1208 |
| AccB1I | GGYRCC | 1 cut(s) | 344 |
| AciI | CCGC | 8 cut(s) | 42, 57, 145, 210, 282, 306, 769, 1567 |
| AclI | AACGTT | 1 cut(s) | 1030 |
| AclWI | GGATC | 2 cut(s) | 881, 1940 |
| AcoI | YGGCCR | 1 cut(s) | 1938 |
| AcsI | RAATTY | 3 cut(s) | 479, 1207, 1674 |
| AcuI | CTGAAG | 4 cut(s) | 1149, 1635, 1814, 1987 |
| AcyI | GRCGYC | 3 cut(s) | 321, 339, 345 |
| AfaI | GTAC | 3 cut(s) | 1158, 1162, 1758 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 121, 1252, 1257, 1549 |
| AflII | CTTAAG | 1 cut(s) | 1180 |
| AgsI | TTSAA | 9 cut(s) | 464, 479, 499, 601, 623, 875, 1117, 1407, 1665 |
| AhlI | ACTAGT | 1 cut(s) | 1753 |
| AjnI | CCWGG | 3 cut(s) | 231, 438, 1287 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1773, 1805 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1710, 1742 |
| Alw21I | GWGCWC | 3 cut(s) | 138, 409, 1494 |
| Alw26I | GTCTC | 6 cut(s) | 31, 37, 95, 551, 897, 1195 |
| Alw44I | GTGCAC | 1 cut(s) | 405 |
| AlwI | GGATC | 2 cut(s) | 881, 1940 |
| Ama87I | CYCGRG | 1 cut(s) | 1985 |
| AoxI | GGCC | 7 cut(s) | 18, 36, 64, 190, 234, 1776, 1938 |
| ApaI | GGGCCC | 1 cut(s) | 1780 |
| ApaLI | GTGCAC | 1 cut(s) | 405 |
| ApeKI | GCWGC | 4 cut(s) | 284, 1166, 1295, 1832 |
| ApoI | RAATTY | 3 cut(s) | 479, 1207, 1674 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 483, 814, 1031 |
| AspLEI | GCGC | 1 cut(s) | 347 |
| AspS9I | GGNCC | 5 cut(s) | 65, 235, 1776, 1777, 1842 |
| AsuC2I | CCSGG | 1 cut(s) | 891 |
| AsuHPI | GGTGA | 1 cut(s) | 76 |
| AvaI | CYCGRG | 1 cut(s) | 1985 |
| AvaII | GGWCC | 1 cut(s) | 1842 |
| BaeGI | GKGCMC | 2 cut(s) | 409, 1780 |
| BalI | TGGCCA | 1 cut(s) | 1940 |
| BanI | GGYRCC | 1 cut(s) | 344 |
| BanII | GRGCYC | 3 cut(s) | 138, 1494, 1780 |
| Bbv12I | GWGCWC | 3 cut(s) | 138, 409, 1494 |
| BbvCI | CCTCAGC | 1 cut(s) | 10 |
| BbvI | GCAGC | 4 cut(s) | 271, 1178, 1307, 1819 |
| BccI | CCATC | 5 cut(s) | 221, 1574, 1613, 1873, 2003 |
| BceAI | ACGGC | 3 cut(s) | 188, 314, 1872 |
| BciT130I | CCWGG | 3 cut(s) | 233, 440, 1289 |
| BciVI | GTATCC | 1 cut(s) | 1674 |
| BcnI | CCSGG | 1 cut(s) | 891 |
| BcoDI | GTCTC | 6 cut(s) | 31, 37, 95, 551, 897, 1195 |
| BcuI | ACTAGT | 1 cut(s) | 1753 |
| BfaI | CTAG | 6 cut(s) | 662, 927, 1092, 1556, 1754, 1955 |
| BfmI | CTRYAG | 4 cut(s) | 953, 1084, 1164, 1355 |
| BfoI | RGCGCY | 1 cut(s) | 348 |
| BfrI | CTTAAG | 1 cut(s) | 1180 |
| BfuAI | ACCTGC | 1 cut(s) | 1208 |
| BfuI | GTATCC | 1 cut(s) | 1674 |
| BisI | GCNGC | 6 cut(s) | 210, 282, 285, 1167, 1296, 1833 |
| BlpI | GCTNAGC | 1 cut(s) | 1700 |
| BlsI | GCNGC | 6 cut(s) | 211, 283, 286, 1168, 1297, 1834 |
| Bme1390I | CCNGG | 4 cut(s) | 233, 440, 891, 1289 |
| Bme18I | GGWCC | 1 cut(s) | 1842 |
| BmeT110I | CYCGRG | 1 cut(s) | 1985 |
| BmgT120I | GGNCC | 5 cut(s) | 65, 235, 1776, 1777, 1842 |
| BmiI | GGNNCC | 6 cut(s) | 67, 346, 444, 1442, 1777, 1778 |
| BmrFI | CCNGG | 4 cut(s) | 233, 440, 891, 1289 |
| BmsI | GCATC | 6 cut(s) | 156, 304, 385, 1175, 1624, 1756 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 318, 350 |
| Bpu10I | CCTNAGC | 2 cut(s) | 10, 1530 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1700 |
| BpuEI | CTTGAG | 4 cut(s) | 104, 122, 989, 1908 |
| BpuMI | CCSGG | 1 cut(s) | 891 |
| BsaAI | YACGTR | 2 cut(s) | 1160, 1826 |
| BsaBI | GATNNNNATC | 2 cut(s) | 261, 762 |
| BsaHI | GRCGYC | 3 cut(s) | 321, 339, 345 |
| BsaI | GGTCTC | 1 cut(s) | 37 |
| BsaJI | CCNNGG | 5 cut(s) | 15, 231, 289, 1036, 1251 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 230, 260 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 121, 1252, 1257, 1549 |
| Bse118I | RCCGGY | 3 cut(s) | 62, 317, 341 |
| Bse1I | ACTGG | 4 cut(s) | 1053, 1059, 1819, 1941 |
| Bse3DI | GCAATG | 1 cut(s) | 1711 |
| Bse8I | GATNNNNATC | 2 cut(s) | 261, 762 |
| BseBI | CCWGG | 3 cut(s) | 233, 440, 1289 |
| BseDI | CCNNGG | 5 cut(s) | 15, 231, 289, 1036, 1251 |
| BseGI | GGATG | 9 cut(s) | 213, 376, 716, 763, 1021, 1273, 1563, 1589, 1865 |
| BseJI | GATNNNNATC | 2 cut(s) | 261, 762 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 121, 1252, 1257, 1549 |
| BseMI | GCAATG | 1 cut(s) | 1711 |
| BseMII | CTCAG | 5 cut(s) | 24, 142, 1292, 1521, 1608 |
| BseNI | ACTGG | 4 cut(s) | 1053, 1059, 1819, 1941 |
| BseSI | GKGCMC | 2 cut(s) | 409, 1780 |
| BseXI | GCAGC | 4 cut(s) | 271, 1178, 1307, 1819 |
| BsgI | GTGCAG | 1 cut(s) | 1236 |
| BshFI | GGCC | 7 cut(s) | 20, 38, 66, 192, 236, 1778, 1940 |
| BshNI | GGYRCC | 1 cut(s) | 344 |
| BsiHKAI | GWGCWC | 3 cut(s) | 138, 409, 1494 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1985 |
| BsiSI | CCGG | 4 cut(s) | 63, 318, 342, 891 |
| BsiWI | CGTACG | 1 cut(s) | 1156 |
| BslFI | GGGAC | 2 cut(s) | 182, 1229 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 121, 1252, 1257, 1549 |
| BsmAI | GTCTC | 6 cut(s) | 31, 37, 95, 551, 897, 1195 |
| BsmBI | CGTCTC | 4 cut(s) | 31, 95, 897, 1195 |
| BsmFI | GGGAC | 2 cut(s) | 182, 1229 |
| BsnI | GGCC | 7 cut(s) | 20, 38, 66, 192, 236, 1778, 1940 |
| Bso31I | GGTCTC | 1 cut(s) | 37 |
| BsoBI | CYCGRG | 1 cut(s) | 1985 |
| Bsp120I | GGGCCC | 1 cut(s) | 1776 |
| Bsp1286I | GDGCHC | 4 cut(s) | 138, 409, 1494, 1780 |
| Bsp143I | GATC | 7 cut(s) | 76, 250, 886, 949, 1060, 1394, 1945 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1700 |
| BspACI | CCGC | 8 cut(s) | 42, 57, 145, 210, 282, 306, 769, 1567 |
| BspANI | GGCC | 7 cut(s) | 20, 38, 66, 192, 236, 1778, 1940 |
| BspCNI | CTCAG | 5 cut(s) | 23, 141, 1293, 1522, 1607 |
| BspHI | TCATGA | 2 cut(s) | 880, 1141 |
| BspLI | GGNNCC | 6 cut(s) | 67, 346, 444, 1442, 1777, 1778 |
| BspMAI | CTGCAG | 1 cut(s) | 1168 |
| BspMI | ACCTGC | 1 cut(s) | 1208 |
| BspPI | GGATC | 2 cut(s) | 881, 1940 |
| BspQI | GCTCTTC | 1 cut(s) | 1925 |
| BspT107I | GGYRCC | 1 cut(s) | 344 |
| BspTI | CTTAAG | 1 cut(s) | 1180 |
| BspTNI | GGTCTC | 1 cut(s) | 37 |
| BsrDI | GCAATG | 1 cut(s) | 1711 |
| BsrFI | RCCGGY | 3 cut(s) | 62, 317, 341 |
| BsrI | ACTGG | 4 cut(s) | 1053, 1059, 1819, 1941 |
| BssAI | RCCGGY | 3 cut(s) | 62, 317, 341 |
| BssECI | CCNNGG | 5 cut(s) | 15, 231, 289, 1036, 1251 |
| BssMI | GATC | 7 cut(s) | 76, 250, 886, 949, 1060, 1394, 1945 |
| BssNI | GRCGYC | 3 cut(s) | 321, 339, 345 |
| BssT1I | CCWWGG | 2 cut(s) | 1036, 1251 |
| Bst2UI | CCWGG | 3 cut(s) | 233, 440, 1289 |
| Bst4CI | ACNGT | 1 cut(s) | 1359 |
| Bst6I | CTCTTC | 3 cut(s) | 52, 365, 1925 |
| BstACI | GRCGYC | 3 cut(s) | 321, 339, 345 |
| BstAFI | CTTAAG | 1 cut(s) | 1180 |
| BstBAI | YACGTR | 2 cut(s) | 1160, 1826 |
| BstC8I | GCNNGC | 8 cut(s) | 304, 319, 343, 349, 1110, 1171, 1551, 1912 |
| BstDEI | CTNAG | 6 cut(s) | 10, 128, 1301, 1530, 1594, 1700 |
| BstF5I | GGATG | 9 cut(s) | 213, 376, 716, 763, 1021, 1273, 1563, 1589, 1865 |
| BstH2I | RGCGCY | 1 cut(s) | 348 |
| BstHHI | GCGC | 1 cut(s) | 347 |
| BstKTI | GATC | 7 cut(s) | 79, 253, 889, 952, 1063, 1397, 1948 |
| BstMAI | GTCTC | 6 cut(s) | 31, 37, 95, 551, 897, 1195 |
| BstMBI | GATC | 7 cut(s) | 76, 250, 886, 949, 1060, 1394, 1945 |
| BstNI | CCWGG | 3 cut(s) | 233, 440, 1289 |
| BstNSI | RCATGY | 1 cut(s) | 795 |
| BstSCI | CCNGG | 4 cut(s) | 231, 438, 889, 1287 |
| BstSFI | CTRYAG | 4 cut(s) | 953, 1084, 1164, 1355 |
| BstSLI | GKGCMC | 2 cut(s) | 409, 1780 |
| BstSNI | TACGTA | 2 cut(s) | 1160, 1826 |
| BstV1I | GCAGC | 4 cut(s) | 271, 1178, 1307, 1819 |
| BsuI | GTATCC | 1 cut(s) | 1674 |
| BsuRI | GGCC | 7 cut(s) | 20, 38, 66, 192, 236, 1778, 1940 |
| BtsCI | GGATG | 9 cut(s) | 213, 376, 716, 763, 1021, 1273, 1563, 1589, 1865 |
| BtsIMutI | CAGTG | 4 cut(s) | 1052, 1364, 1948, 2011 |
| BveI | ACCTGC | 1 cut(s) | 1208 |
| Cac8I | GCNNGC | 8 cut(s) | 304, 319, 343, 349, 1110, 1171, 1551, 1912 |
| CciI | TCATGA | 2 cut(s) | 880, 1141 |
| CfoI | GCGC | 1 cut(s) | 347 |
| Cfr10I | RCCGGY | 3 cut(s) | 62, 317, 341 |
| Cfr13I | GGNCC | 5 cut(s) | 65, 235, 1776, 1777, 1842 |
| CseI | GACGC | 4 cut(s) | 310, 347, 407, 1177 |
| Csp6I | GTAC | 3 cut(s) | 1157, 1161, 1757 |
| CviAII | CATG | 7 cut(s) | 587, 792, 881, 1142, 1486, 1936, 2019 |
| CviQI | GTAC | 3 cut(s) | 1157, 1161, 1757 |
| DdeI | CTNAG | 6 cut(s) | 10, 128, 1301, 1530, 1594, 1700 |
| DinI | GGCGCC | 1 cut(s) | 346 |
| DpnI | GATC | 7 cut(s) | 78, 252, 888, 951, 1062, 1396, 1947 |
| DpnII | GATC | 7 cut(s) | 76, 250, 886, 949, 1060, 1394, 1945 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 110 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 110 |
| EaeI | YGGCCR | 1 cut(s) | 1938 |
| Eam1104I | CTCTTC | 3 cut(s) | 52, 365, 1925 |
| EarI | CTCTTC | 3 cut(s) | 52, 365, 1925 |
| EciI | GGCGGA | 1 cut(s) | 31 |
| Ecl136II | GAGCTC | 2 cut(s) | 136, 1492 |
| Eco105I | TACGTA | 2 cut(s) | 1160, 1826 |
| Eco130I | CCWWGG | 2 cut(s) | 1036, 1251 |
| Eco24I | GRGCYC | 3 cut(s) | 138, 1494, 1780 |
| Eco31I | GGTCTC | 1 cut(s) | 37 |
| Eco47I | GGWCC | 1 cut(s) | 1842 |
| Eco53kI | GAGCTC | 2 cut(s) | 136, 1492 |
| Eco57I | CTGAAG | 4 cut(s) | 1149, 1635, 1814, 1987 |
| Eco88I | CYCGRG | 1 cut(s) | 1985 |
| EcoICRI | GAGCTC | 2 cut(s) | 136, 1492 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1776 |
| EcoRII | CCWGG | 3 cut(s) | 231, 438, 1287 |
| EcoT14I | CCWWGG | 2 cut(s) | 1036, 1251 |
| EcoT22I | ATGCAT | 2 cut(s) | 1749, 1882 |
| EcoT38I | GRGCYC | 3 cut(s) | 138, 1494, 1780 |
| EgeI | GGCGCC | 1 cut(s) | 346 |
| EheI | GGCGCC | 1 cut(s) | 346 |
| ErhI | CCWWGG | 2 cut(s) | 1036, 1251 |
| Esp3I | CGTCTC | 4 cut(s) | 31, 95, 897, 1195 |
| FaeI | CATG | 7 cut(s) | 590, 795, 884, 1145, 1489, 1939, 2022 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 161, 193, 799, 831 |
| FaqI | GGGAC | 2 cut(s) | 182, 1229 |
| FatI | CATG | 7 cut(s) | 586, 791, 880, 1141, 1485, 1935, 2018 |
| FauI | CCCGC | 1 cut(s) | 776 |
| FauNDI | CATATG | 1 cut(s) | 1466 |
| Fnu4HI | GCNGC | 6 cut(s) | 210, 282, 285, 1167, 1296, 1833 |
| FokI | GGATG | 9 cut(s) | 200, 363, 723, 750, 1008, 1280, 1550, 1596, 1852 |
| FriOI | GRGCYC | 3 cut(s) | 138, 1494, 1780 |
| Fsp4HI | GCNGC | 6 cut(s) | 210, 282, 285, 1167, 1296, 1833 |
| FspBI | CTAG | 6 cut(s) | 662, 927, 1092, 1556, 1754, 1955 |
| GlaI | GCGC | 1 cut(s) | 346 |
| GluI | GCNGC | 6 cut(s) | 210, 282, 285, 1167, 1296, 1833 |
| HaeII | RGCGCY | 1 cut(s) | 348 |
| HaeIII | GGCC | 7 cut(s) | 20, 38, 66, 192, 236, 1778, 1940 |
| HapII | CCGG | 4 cut(s) | 63, 318, 342, 891 |
| HgaI | GACGC | 4 cut(s) | 310, 347, 407, 1177 |
| HhaI | GCGC | 1 cut(s) | 347 |
| Hin1I | GRCGYC | 3 cut(s) | 321, 339, 345 |
| Hin1II | CATG | 7 cut(s) | 590, 795, 884, 1145, 1489, 1939, 2022 |
| Hin6I | GCGC | 1 cut(s) | 345 |
| HinP1I | GCGC | 1 cut(s) | 345 |
| HindIII | AAGCTT | 3 cut(s) | 170, 295, 1964 |
| HinfI | GANTC | 7 cut(s) | 104, 257, 656, 1012, 1095, 1138, 1403 |
| HpaII | CCGG | 4 cut(s) | 63, 318, 342, 891 |
| HphI | GGTGA | 1 cut(s) | 76 |
| Hpy166II | GTNNAC | 4 cut(s) | 397, 407, 1472, 1729 |
| Hpy8I | GTNNAC | 4 cut(s) | 397, 407, 1472, 1729 |
| Hpy99I | CGWCG | 2 cut(s) | 209, 341 |
| HpyCH4III | ACNGT | 1 cut(s) | 1359 |
| HpyCH4IV | ACGT | 6 cut(s) | 409, 1030, 1155, 1159, 1825, 1959 |
| HpyF3I | CTNAG | 6 cut(s) | 10, 128, 1301, 1530, 1594, 1700 |
| HpySE526I | ACGT | 6 cut(s) | 409, 1030, 1155, 1159, 1825, 1959 |
| Hsp92I | GRCGYC | 3 cut(s) | 321, 339, 345 |
| Hsp92II | CATG | 7 cut(s) | 590, 795, 884, 1145, 1489, 1939, 2022 |
| HspAI | GCGC | 1 cut(s) | 345 |
| KasI | GGCGCC | 1 cut(s) | 344 |
| KroI | GCCGGC | 2 cut(s) | 317, 341 |
| KroNI | GCCGGC | 2 cut(s) | 319, 343 |
| Kzo9I | GATC | 7 cut(s) | 76, 250, 886, 949, 1060, 1394, 1945 |
| LguI | GCTCTTC | 1 cut(s) | 1925 |
| LmnI | GCTCC | 4 cut(s) | 133, 448, 916, 1489 |
| Lsp1109I | GCAGC | 4 cut(s) | 271, 1178, 1307, 1819 |
| LweI | GCATC | 6 cut(s) | 156, 304, 385, 1175, 1624, 1756 |
| MaeI | CTAG | 6 cut(s) | 662, 927, 1092, 1556, 1754, 1955 |
| MaeII | ACGT | 6 cut(s) | 409, 1030, 1155, 1159, 1825, 1959 |
| MaeIII | GTNAC | 3 cut(s) | 517, 1523, 1821 |
| MalI | GATC | 7 cut(s) | 78, 252, 888, 951, 1062, 1396, 1947 |
| MboI | GATC | 7 cut(s) | 76, 250, 886, 949, 1060, 1394, 1945 |
| MboII | GAAGA | 8 cut(s) | 39, 71, 352, 476, 613, 810, 1628, 1942 |
| MhlI | GDGCHC | 4 cut(s) | 138, 409, 1494, 1780 |
| MlsI | TGGCCA | 1 cut(s) | 1940 |
| MluCI | AATT | 9 cut(s) | 70, 479, 669, 746, 933, 1207, 1222, 1674, 1991 |
| MluNI | TGGCCA | 1 cut(s) | 1940 |
| Mly113I | GGCGCC | 1 cut(s) | 345 |
| MlyI | GAGTC | 2 cut(s) | 98, 1132 |
| MmeI | TCCRAC | 5 cut(s) | 880, 1056, 1245, 1291, 1621 |
| Mox20I | TGGCCA | 1 cut(s) | 1940 |
| Mph1103I | ATGCAT | 2 cut(s) | 1749, 1882 |
| MreI | CGCCGGCG | 1 cut(s) | 341 |
| MroNI | GCCGGC | 2 cut(s) | 317, 341 |
| MroXI | GAANNNNTTC | 3 cut(s) | 483, 814, 1031 |
| MscI | TGGCCA | 1 cut(s) | 1940 |
| MslI | CAYNNNNRTG | 3 cut(s) | 381, 591, 671 |
| Msp20I | TGGCCA | 1 cut(s) | 1940 |
| MspA1I | CMGCKG | 1 cut(s) | 284 |
| MspCI | CTTAAG | 1 cut(s) | 1180 |
| MspI | CCGG | 4 cut(s) | 63, 318, 342, 891 |
| MspR9I | CCNGG | 4 cut(s) | 233, 440, 891, 1289 |
| MvaI | CCWGG | 3 cut(s) | 233, 440, 1289 |
| NaeI | GCCGGC | 2 cut(s) | 319, 343 |
| NarI | GGCGCC | 1 cut(s) | 345 |
| NciI | CCSGG | 1 cut(s) | 891 |
| NdeI | CATATG | 1 cut(s) | 1466 |
| NdeII | GATC | 7 cut(s) | 76, 250, 886, 949, 1060, 1394, 1945 |
| NgoMIV | GCCGGC | 2 cut(s) | 317, 341 |
| NlaIII | CATG | 7 cut(s) | 590, 795, 884, 1145, 1489, 1939, 2022 |
| NlaIV | GGNNCC | 6 cut(s) | 67, 346, 444, 1442, 1777, 1778 |
| NmeAIII | GCCGAG | 2 cut(s) | 14, 168 |
| NmuCI | GTSAC | 1 cut(s) | 1523 |
| NsiI | ATGCAT | 2 cut(s) | 1749, 1882 |
| NspI | RCATGY | 1 cut(s) | 795 |
| PagI | TCATGA | 2 cut(s) | 880, 1141 |
| PciSI | GCTCTTC | 1 cut(s) | 1925 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 201, 318 |
| PdiI | GCCGGC | 2 cut(s) | 319, 343 |
| PdmI | GAANNNNTTC | 3 cut(s) | 483, 814, 1031 |
| PfeI | GAWTC | 5 cut(s) | 257, 656, 1012, 1095, 1403 |
| Pfl23II | CGTACG | 1 cut(s) | 1156 |
| PkrI | GCNGC | 6 cut(s) | 211, 283, 286, 1168, 1297, 1834 |
| PleI | GAGTC | 2 cut(s) | 98, 1132 |
| PluTI | GGCGCC | 1 cut(s) | 348 |
| PpsI | GAGTC | 2 cut(s) | 98, 1132 |
| Ppu21I | YACGTR | 2 cut(s) | 1160, 1826 |
| Psp124BI | GAGCTC | 2 cut(s) | 138, 1494 |
| Psp1406I | AACGTT | 1 cut(s) | 1030 |
| Psp6I | CCWGG | 3 cut(s) | 231, 438, 1287 |
| PspGI | CCWGG | 3 cut(s) | 231, 438, 1287 |
| PspLI | CGTACG | 1 cut(s) | 1156 |
| PspN4I | GGNNCC | 6 cut(s) | 67, 346, 444, 1442, 1777, 1778 |
| PspOMI | GGGCCC | 1 cut(s) | 1776 |
| PspPI | GGNCC | 5 cut(s) | 65, 235, 1776, 1777, 1842 |
| PstI | CTGCAG | 1 cut(s) | 1168 |
| RsaI | GTAC | 3 cut(s) | 1158, 1162, 1758 |
| RsaNI | GTAC | 3 cut(s) | 1157, 1161, 1757 |
| RseI | CAYNNNNRTG | 3 cut(s) | 381, 591, 671 |
| SacI | GAGCTC | 2 cut(s) | 138, 1494 |
| SapI | GCTCTTC | 1 cut(s) | 1925 |
| SatI | GCNGC | 6 cut(s) | 210, 282, 285, 1167, 1296, 1833 |
| Sau3AI | GATC | 7 cut(s) | 76, 250, 886, 949, 1060, 1394, 1945 |
| Sau96I | GGNCC | 5 cut(s) | 65, 235, 1776, 1777, 1842 |
| SchI | GAGTC | 2 cut(s) | 98, 1132 |
| ScrFI | CCNGG | 4 cut(s) | 233, 440, 891, 1289 |
| SduI | GDGCHC | 4 cut(s) | 138, 409, 1494, 1780 |
| SfaNI | GCATC | 6 cut(s) | 156, 304, 385, 1175, 1624, 1756 |
| SfcI | CTRYAG | 4 cut(s) | 953, 1084, 1164, 1355 |
| SfoI | GGCGCC | 1 cut(s) | 346 |
| SgrAI | CRCCGGYG | 1 cut(s) | 341 |
| SinI | GGWCC | 1 cut(s) | 1842 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 381, 591, 671 |
| SmlI | CTYRAG | 5 cut(s) | 119, 137, 968, 1180, 1923 |
| SmoI | CTYRAG | 5 cut(s) | 119, 137, 968, 1180, 1923 |
| SnaBI | TACGTA | 2 cut(s) | 1160, 1826 |
| SpeI | ACTAGT | 1 cut(s) | 1753 |
| Sse9I | AATT | 9 cut(s) | 70, 479, 669, 746, 933, 1207, 1222, 1674, 1991 |
| SsiI | CCGC | 8 cut(s) | 42, 57, 145, 210, 282, 306, 769, 1567 |
| SspDI | GGCGCC | 1 cut(s) | 344 |
| SspI | AATATT | 1 cut(s) | 1629 |
| SspMI | CTAG | 6 cut(s) | 662, 927, 1092, 1556, 1754, 1955 |
| SstI | GAGCTC | 2 cut(s) | 138, 1494 |
| StyD4I | CCNGG | 4 cut(s) | 231, 438, 889, 1287 |
| StyI | CCWWGG | 2 cut(s) | 1036, 1251 |
| TaaI | ACNGT | 1 cut(s) | 1359 |
| TaiI | ACGT | 6 cut(s) | 412, 1033, 1158, 1162, 1828, 1962 |
| TaqI | TCGA | 6 cut(s) | 312, 336, 434, 788, 948, 1391 |
| TaqII | GACCGA | 1 cut(s) | 19 |
| TasI | AATT | 9 cut(s) | 70, 479, 669, 746, 933, 1207, 1222, 1674, 1991 |
| TauI | GCSGC | 2 cut(s) | 212, 284 |
| TfiI | GAWTC | 5 cut(s) | 257, 656, 1012, 1095, 1403 |
| TscAI | CASTG | 4 cut(s) | 1059, 1364, 1948, 2011 |
| TseFI | GTSAC | 1 cut(s) | 1523 |
| TseI | GCWGC | 4 cut(s) | 284, 1166, 1295, 1832 |
| Tsp45I | GTSAC | 1 cut(s) | 1523 |
| TspGWI | ACGGA | 1 cut(s) | 13 |
| TspRI | CASTG | 4 cut(s) | 1059, 1364, 1948, 2011 |
| Vha464I | CTTAAG | 1 cut(s) | 1180 |
| VneI | GTGCAC | 1 cut(s) | 405 |
| VpaK11BI | GGWCC | 1 cut(s) | 1842 |
| XapI | RAATTY | 3 cut(s) | 479, 1207, 1674 |
| XbaI | TCTAGA | 1 cut(s) | 1091 |
| XceI | RCATGY | 1 cut(s) | 795 |
| XmnI | GAANNNNTTC | 3 cut(s) | 483, 814, 1031 |
| XspI | CTAG | 6 cut(s) | 662, 927, 1092, 1556, 1754, 1955 |
| Zsp2I | ATGCAT | 2 cut(s) | 1749, 1882 |