Rw6G002870

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000007
Physical Location & Seq
Forward (+)
4662487 .. 4686710
24224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G002870.1

Sequence Viewer

Length: 5946 bp
ATGAGCACAGAGAGCTCTTCACCTCCTCGGTGGAAATATGATGTCTTTTTGAGTTTTAGAGGCGAGGATACTCGAAAGGGTTTTACAGACCATCTATACACTGCGTTGGATGATAAAGGAATCACAACTTTCAGGGATGATCCTGAACTTCAGAAAGGGGAAGATATTTCTCCAGCACTATTTGCTGCAATTGAAGAATCAAGATTTGGCCTCATTGTTCTCTCACAAAATTATGCATCGTCGACATGGTGCTTGGATGAACTTGTGAGAATTATTGAATGTATGAAAGCAAGAGAAACTGTGCTGCCAATTTTCTATGATGTTGATCCCTCTGTTGTACGAAAGCAAACAGGGAGTTTTGGTGAAGCCTTTGCTAATCATGGAGAAAGGTTTATCGGTGACAAGGAGAAAGTGTGGAGGTGGAGATCTGCATTAACTGAAGTGGCAAGTTTCTCAGGGTGGAATTCAAAGGAATGGTATGAAGCAAAGCTCATTAGAGATATTGTTGAAGTTATATGGAAAAGACTGCAACGTACATCATTCAGTTATGAAGAAAATCTAGTTGGAATTTACTCAAGATTGCAGCTAGTCCACTTCTTTTTAGATGAAGGGGTGGATGACGTCCGCTTCATTGGGATATGGGGAATGGGCGGGATCGGTAAGACAACTATGGTAAGAGCGGTGCATCGGAGAATCTCTCATGAATTTCAATCTAATTTCCTTCTTACTGATGTTAGAAACTCTGTTGAAAAAGGTGGTTTACTTAAACTGCAAAAGCAACTACTCTCTAGGATTGGGAAAAGAAAGGCTGACATATTAGACCTTCAAGAAGGAGCCACCATATTACAGAAGTTATTATGTCACAAAAAAGTTCTTCTCATTCTTGATGATGTGAACCATTCAAATCAGTTAAAATATTTGGCAGGAAACCGAGAGTGGTTTGGTTCAGGGAGTAGAGTTCTTATCACAACTAGAGATGAGCATTTGTTGATTGAACATGAAGTGAAGAGAAGATTGAAGGTCGAAGAATTAAATGATGATGATTCTCTTAAGCTTTTTAGCTGGAATGCATTCAAAAGAGGTTACCCTGAAGAAGATTTTCTTGGTTTGTCAAAATCTGTTGTAAGTTATGCCAAAGGTCTTCCTCTAGCTCTTGAAGTACTGGGTTCTTCTTTGTATCGAAGAGATCTAAGTGAATGGAACAGTGCACTGAAAAAACTGGGAAGAATTTGTAACTTGAAAATTTTTGACATACTTAAAATAAGTTACAATGATCTAGATTCCGAAGAGAAGAAAATTTTCCTAGACATTGCATGTTTCTTTAATGGACAGGACAAAGATCAAGTAACAGAAGTACTAAACAGTTGCGATTTTTCTGCAATTATTGGAATAAATGTTCTTATCGAAAGATCTCTCCTGAATGTATCGCACGGAAGACTAAGGATGCATGATTTGCTCCAAGAAATGGGTCATGAAATTGTCCGCCAAGAGTCTCGTAATGAGCTGGGCAGGTGCAGTAGATTGTGGCTTCTTGAAGACGTCAAACATGTCTTGACCAAAAATACTGGAACTGAAGCAATAGAAGGCATATTTATGGACTCGACCGAGTTAGGAGTGGACGTGGACGTGACTCCAAAATCATTTTTAATGATGAACAAATTGAGATACCTGAAGATCAAGAATGGGAACCTGCCTAAGGGACTTGAATATCTTCCCAATAGTTTACGGATTCTTGATTGGACGAGGTGTCCGTCAGATTCTCTGCCATCACATTTCAACCCTCAGAAGCTGCTCGAACTTAGCTTGTGTCATAGTTGTATTAAACATGTTCGGATAGGAACGGAGCCTTTATGCAATTTGAAAACCATCAATCTGAGTCACTCTCTGAATCTTGTCAGCACCCCAAACTTTAAAGGTATGCCATATCTCAAGTTTCTGTATCTTGAAGGTTGTATAAGATTGTATGAGGTTGACCCAACAATTGAAGTGCTTGAAAGACTTACTGTGCTGAACTTGAAAGATTGCAAAAGTCTCGTGCATTTTGCAAGCAGTGTACGTGGCTTAAAAAATCTCAAAGTTCTGAATCTTTCTGGTTGCTCAAAGCTTAAAAAACTACCAAATGACATGGGTCATTTAGAGAGTCTAGAGAAGCTTCACGTGAATGGCACCGGCATAAGAGAACTACCCTCCTCTATTGGAATGCTTGAAAGACTTCCTCTACTGAAAATAGAAGATTGCAAAGATCTCGTGTGTCTTCCAATTAGTCTTGGTGGCTTAAAATCTCTCAAGGTCTTTATTATTTCTGGTTGCTCAAAGGTTGAAAAATTGCCAGAGGAGTTGGGCGATAGAAAGTGCTTGGTAGAGGTTGATGTGAGTGGAACTTCTATAAAAGAGCTACCTTGCTCTATTGGATTGCTTGAAGGACTTGTTTTTGTGTCCTTGAGAGATTGCAAACATCTTGTGTGTCTTCCAAGCAGTGTAGGTGGCTTAAAATCTCTCAAATATCTCAAGCTTTCTGGTTTGTCAAAGCTTGACAAATTGCCGGATGGGTTGGGTCATGTTGCTTGTTTGGAGAATCTTGATGTGAGGGGAAGTGGCATAAGAGAACTGCCCTTCTCTATTGGCATGCTTCAAGGACTTGTTTCTATGTCGTTGAGAGATTGCAAACATCTTGAGTGTCTTCCAAGCAGTGTAGGTGGCTTAAAATCTCTCAAAGATCTCAATCTTTCTGGTTGCTCAAAGCTTGACAAATTGCCGGATGAGTTGGGTCATGTTGCCTGTTTGGAGAATCTTGATGTGAGTGGAAGTGGCACAAGAGAACTGCCATCCTCTATTGGTCTTTTGAAAAACCTCAAAGAATTCTCTCTTGCTGGATGTAAAGCAGAGTCACCTGAATCATGGAATATGATGTTCAATCCCTTTCAGTTATTGCGAAAAAGAAGTCACATTCCGGCAGGATTGAGGTTGTTAGGTCACAAAAAAGTTCTTCTTGTTCTTGATGATGTGAACCATCCAAGCCATTTAAAATATTTGGCAGGAAACCAAGACTGGTTTGGTTCAGGGAGTAGAGTGCTTATCACAACTAGAAATGAGCATTTGTTGATTCAACATGGAGTGAAGACAAGATTGAAGGTCGAAGAATTAAACCATGATGATTCTCTTAAGCTTTTTAGCTGGAAAGCATTCCAAAGAGGTTACCCTGAAGAAGATTTTCATGGTTTGTCAGAGTCTGTTATAAATTATGCCAAAGGTCTTCCTTTAGCTCTTGAAGTACTGGGTTCTTTTTTGTATGGAAGAGATCCAAGTGTATGGAACAGTGCACTGACAAAACTGGGAAGAGTTTGTAACTTGGAAATTTTTGACACACTTAAAATAAGTTACAATGATCTAGATTCCGAAGAGAAGAAAATTTTCCTAGACATTGCATGTTTCTTTAATGGACAGGACGAAGATCGAGTAACAAAAGTAATAAACAGTTGTGATTTTTCTGCAATTATTGGAATACAAGTTCTTATCGAAAGATCTCTCTTGACTGTTTCGCATGGAAGACTAAGGATGCACGATTTGCTCCAAGAAATGGGATGGGATATTGTCCGCGGGGAATCTCCTAACGAGCCGGGCAGGTGGAGTAGGTTGTGGCTTCTTAAAGACGTTGAACATGTCTTGACCAAAAATACTGGAACTGAAGCAATAGAAGGCATATTTGTGGACTCAACCAAGTTAGGAGTAGACGTGGACGTGACTCCGAAATCATTTTCGATGGACGTGACTCCAAAATCATTTTCAATGATGAATAATTTGAGATACCTGAAGATCAAGAATGGGAACCTGCCTAAGGGACTTGAGCATCTTCCCAATAGTTTACGAATTCTTAATTGGACGAGTTATCCGTTAAAATCTTTGCCATCACATTTCAACCCTCTGAAGCTGCTCGAACTAAGCTTGTCTCATAGTTCTATTGAACACTTTCGGATAGGAACAGAGCCTTTATACAATTTGAAAACCATTAAGCTGAGTCACTCTCTGAATCTTGTCAACACCCCAAACTTTGAAGGTATGCCATATCTCGAGAATCTGTTTCTTGAAGGTTGTATAAGTTTGTGTGAGATTGACCTGACAATTGAAGTGCTTGAAAGACTTACTGTGATGAACTTGAAAGATTGCAAGAGTCTTGTGCATTTTGTAAGCAGTGTACGTGGCTTAAAATCTCTCAAAGTTCTGAATCTTTCTGGTTGCTCAAAGCTTAAAAAACTACCAAATGACATGGGTCATTTAGAGAGTTTGGAGGAGCTTCACATGAATGGCACCGGCATAAGAGAACTACCTTCTATTGGAATGCTTGAAAGACTTTCTGTGCTGAATATGGAAGATTGCAAAGATCTGGTGTGTCTTCCAAGCAGTGTAGGTGGCTTAAAATCTGCCAAAGTTGTTAATATTTCTGGTTGCTCAAAGCTTGAAAAATTGCCAGAGGAGTTGGGTGATATACAGTGCTTGGTAGAGGTTGATGTGAGTCGAACTTCTATAAAAGAACTACCTTGCTCTATTGGAATGCTTGAAGGACTTGTTTCTATGTCCTTGAGAGATTGCAAACATCTTGTGTGTCTTCCAGACCGTGTAGGTGGCTTAAAATCTCTCAAATATCTCAATCTTTCTGGTTGCTCAAAGCTTGACAAATTGCCGGATGAGTTGGGTCATGTTGCCTGTTTGGAGAAGCTTGATGTGAGTGGAAGTGGCATAAGAGAACTGCCCTCCTCTATTGGTCTTTTGAAAAACCTCAAAAAATTCTCTCTTGCTGGATGTAAAGCCGAGTCGCCTGAATCATGGAATATGATGCTCAATCCCTTTCAGTTATTCCGAAAGAGAAGTCACATTCCGGAAGGATTGTCGTTGCCTTGTTTGTCGGGTTTGCATTCATTAACTGATTTTGATCTAAGTGACTGTAATCTTTCTGAATTGCCTAGTGATTTTGGAAGCTTGTCTTCATTAAGACATTTAAATCTCAGCAGAAATCAATTCAGTAGACTACCCGAGAGCATCGGCCAACTCTCTAGACTTAAATGTCTTTACTTGAATTGGTGCTGCAAGCTTCAGACATTACCAGAGCTTCCATCTCATGTATATGTAAACGCTAGCGACTGCATTTCATTAGATACATTGGCCAATCAAATAAGACAATACCATTCGGTGCTAAAAGGAAGGTTTGTTAACTGTTTCAAAATGGTGGAGAATGAGAGCAGTAAGAGTATAGCACTTCCATTGCTAACCCGCTACCTTGAGAGTAAAGCATTTTCTGACCATGAAAAATTTCAATTTGTTGGTCCTGGAAATGAAATTCCAGAGTGGTACAATCACCAAAGTGTGGGGTCTTTAATAACTATAGAGCTGCATCCAGGTTGGTTTAGTAACAAGTGGATGGGGTTGGCCTGCTGTTTCGTTTTTAGACTCCTCAAACCACTCCCGCCTTCAGTTGCGTGGCACATTCATTGCGAATTTAGGGCCAATGGGGAACAACCCCAATATTGCTTTGATCCAGTGTTTGGGGAAGAATGGGGTCAACCTGTATTGGATCACATTTCGTTCTTCTATAAACCCCGTCATCAATTCTACTTAAAAAATAAGTGGTCAGATATCTACGGTCCGCTTGTATTCTCATTTCAACCTCGCTACTGGGATGGTAACAAAATAATGAGTGAGGAAATTGTGCAAGTGAAGAAGTGTGCGGTCCGTATGGTATATGAGGAAGATGTGGAGGAGCTTGGGGAAACACTACTGAAGCAGCACAATGTTCGCATTAATACCAAACGAGGCCTTCAACACTATGATGACGATGATGTTGCAGCCTCTAGTAGTGCAAATTTGGCTCATCCAAAGAGAATTAAACATCACCACTTTGACGGCGCAGGACCCAGTGGAATCTCTTATATTGATGACCAGAAACATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 NB-ARC TIR

Protein Analysis

1981

Amino Acids

223.47

Weight (kDa)

7.06

Isoelectric Point (pI)

39.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 12 - 189 2.7e-52 TIR domain
TIR_2 PF13676 15 - 111 1.6e-14 TIR domain
NB-ARC PF00931 201 - 359 1.3e-21 NB-ARC domain
WHD_ROQ1 PF23282 429 - 498 5e-20 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 659 - 764 2.3e-14 Leucine-rich repeat region
LRR_13 PF23286 688 - 773 8.8e-08 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_13 PF23286 759 - 846 2.5e-07 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 772 - 837 1.9e-07 Leucine-rich repeat region
LRR_14 PF23598 822 - 910 1.1e-12 Leucine-rich repeat region
LRR_14 PF23598 904 - 957 2.7e-06 Leucine-rich repeat region
NB-ARC PF00931 988 - 1064 4.2e-08 NB-ARC domain
WHD_ROQ1 PF23282 1133 - 1202 7.9e-19 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 1377 - 1476 7.2e-11 Leucine-rich repeat region
LRR_13 PF23286 1401 - 1486 1e-06 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 1452 - 1549 1.1e-09 Leucine-rich repeat region
LRR_13 PF23286 1471 - 1556 1.7e-07 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 1527 - 1598 1.4e-10 Leucine-rich repeat region
LRR_14 PF23598 1626 - 1696 3.3e-10 Leucine-rich repeat region
LRR_8 PF13855 1638 - 1692 1.5e-06 Leucine rich repeat
C-JID PF20160 1774 - 1917 3.2e-15 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000007)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G17680 AT5G17680
fragaria_vesca FvH4_1g04740 FvH4_1g04740 FvH4_1g04740 FvH4_1g07010 FvH4_1g07020 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11570 FvH4_1g11580 FvH4_1g17862 FvH4_1g22370 FvH4_1g22372 FvH4_1g22377 FvH4_1g22512 FvH4_2g00540 FvH4_2g00541 FvH4_2g00550 FvH4_2g00950 FvH4_2g14320 FvH4_2g14320 FvH4_2g14321 FvH4_3g33030 FvH4_3g33030 FvH4_3g33030 FvH4_3g35620 FvH4_3g35630 FvH4_3g36130 FvH4_3g36131 FvH4_3g36140 FvH4_5g02251 FvH4_6g04060 FvH4_6g04250 FvH4_6g04250 FvH4_6g04250 FvH4_6g04350 FvH4_6g04730 FvH4_6g04730 FvH4_6g05490 FvH4_6g05610 FvH4_6g05610 FvH4_7g12160 FvH4_7g12160 FvH4_7g12160 FvH4_7g21060 FvH4_7g21060 FvH4_7g21060 FvH4_7g21070 FvH4_7g21140 FvH4_7g21140 FvH4_7g21140 FvH4_7g21140 FvH4_7g21140 FvH4_7g21140 FvH4_7g21150 FvH4_7g21170 FvH4_7g21170 FvH4_7g21171 FvH4_7g21172 FvH4_7g21180 FvH4_7g21201 FvH4_7g21201 FvH4_7g21230 FvH4_7g21230 FvH4_7g21230 FvH4_7g28631 FvH4_7g32440 FvH4_7g32460 FvH4_7g32464 FvH4_7g32470 FvH4_7g32480 FvH4_7g32710 FvH4_7g32720 FvH4_7g32740 FvH4_7g32740 FvH4_7g32740 FvH4_7g32760 FvH4_7g33140
malus_domestica MD00G1125900.v1.1 MD00G1126000.v1.1 MD00G1126100.v1.1 MD04G1054900.v1.1 MD05G1007000.v1.1 MD05G1018900.v1.1 MD05G1019700.v1.1 MD05G1020000.v1.1 MD05G1020100.v1.1 MD05G1022400.v1.1 MD05G1022500.v1.1 MD05G1022600.v1.1 MD05G1022800.v1.1 MD05G1028700.v1.1 MD05G1100200.v1.1 MD08G1021900.v1.1 MD10G1006500.v1.1 MD10G1006900.v1.1 MD10G1007200.v1.1 MD10G1007600.v1.1 MD10G1015300.v1.1 MD10G1018400.v1.1 MD10G1018500.v1.1 MD10G1018900.v1.1 MD10G1019200.v1.1 MD10G1019700.v1.1 MD10G1020000.v1.1 MD10G1020100.v1.1 MD10G1020900.v1.1 MD10G1021000.v1.1 MD10G1034300.v1.1 MD10G1034400.v1.1 MD10G1034700.v1.1 MD10G1034800.v1.1 MD10G1035000.v1.1 MD10G1035400.v1.1 MD10G1232400.v1.1 MD15G1377300.v1.1 MD15G1377400.v1.1
prunus_persica Prupe.1G165300_v2.0.a1 Prupe.1G165300_v2.0.a1 Prupe.1G523900_v2.0.a1 Prupe.1G524000_v2.0.a1 Prupe.1G526300_v2.0.a1 Prupe.2G059000_v2.0.a1 Prupe.2G059000_v2.0.a1 Prupe.2G059000_v2.0.a1 Prupe.2G059000_v2.0.a1 Prupe.3G169500_v2.0.a1 Prupe.6G109800_v2.0.a1 Prupe.7G026100_v2.0.a1 Prupe.7G037000_v2.0.a1 Prupe.7G037000_v2.0.a1 Prupe.7G037600_v2.0.a1 Prupe.8G005100_v2.0.a1 Prupe.8G005300_v2.0.a1 Prupe.8G021700_v2.0.a1 Prupe.8G022800_v2.0.a1 Prupe.8G023100_v2.0.a1 Prupe.8G023200_v2.0.a1 Prupe.8G023200_v2.0.a1 Prupe.8G023300_v2.0.a1 Prupe.8G023500_v2.0.a1 Prupe.8G023600_v2.0.a1 Prupe.8G023700_v2.0.a1 Prupe.8G023700_v2.0.a1 Prupe.8G023700_v2.0.a1 Prupe.8G023800_v2.0.a1 Prupe.8G023800_v2.0.a1 Prupe.8G023800_v2.0.a1 Prupe.8G023900_v2.0.a1 Prupe.8G026500_v2.0.a1 Prupe.8G026500_v2.0.a1 Prupe.8G026700_v2.0.a1 Prupe.8G026700_v2.0.a1 Prupe.8G026800_v2.0.a1 Prupe.8G026800_v2.0.a1 Prupe.8G026800_v2.0.a1 Prupe.8G026800_v2.0.a1 Prupe.8G027000_v2.0.a1 Prupe.8G027100_v2.0.a1 Prupe.8G027300_v2.0.a1 Prupe.8G027300_v2.0.a1 Prupe.8G027300_v2.0.a1 Prupe.8G032000_v2.0.a1 Prupe.8G034700_v2.0.a1 Prupe.8G046500_v2.0.a1 Prupe.8G046700_v2.0.a1 Prupe.8G056700_v2.0.a1 Prupe.8G056700_v2.0.a1 Prupe.8G056700_v2.0.a1
pyrus_communis pycom05g01130 pycom05g01150 pycom05g01160 pycom05g01330 pycom05g01340 pycom05g01350 pycom05g01360 pycom05g01390 pycom05g01400 pycom05g01420 pycom05g01430 pycom10g00470 pycom10g00970 pycom10g00980 pycom10g00990 pycom10g01000 pycom10g01340 pycom10g01350 pycom10g01360 pycom10g01390 pycom10g01400 pycom10g01410 pycom10g01420 pycom10g01430 pycom10g02280 pycom10g02300 pycom10g02310 pycom10g02330 pycom10g02340 pycom10g02370 pycom10g02390 pycom10g02400 pycom12g00770 pycom15g33690 pycom15g33720 pycom15g33740 pycom15g33750 pycom15g33800
rosa_chinensis RchiOBHm_Chr1g0340831 RchiOBHm_Chr1g0365481 RchiOBHm_Chr1g0365531 RchiOBHm_Chr1g0365541 RchiOBHm_Chr1g0365551 RchiOBHm_Chr1g0365561 RchiOBHm_Chr1g0365641 RchiOBHm_Chr1g0382021 RchiOBHm_Chr1g0382041 RchiOBHm_Chr1g0382221 RchiOBHm_Chr1g0382261 RchiOBHm_Chr1g0382271 RchiOBHm_Chr1g0382281 RchiOBHm_Chr1g0382321 RchiOBHm_Chr3g0465111 RchiOBHm_Chr3g0481881 RchiOBHm_Chr3g0481891 RchiOBHm_Chr3g0481981 RchiOBHm_Chr3g0482041 RchiOBHm_Chr5g0055581 RchiOBHm_Chr5g0060381 RchiOBHm_Chr5g0061111 RchiOBHm_Chr5g0063811 RchiOBHm_Chr5g0064561 RchiOBHm_Chr5g0064571 RchiOBHm_Chr5g0064661 RchiOBHm_Chr5g0064701 RchiOBHm_Chr5g0064731 RchiOBHm_Chr5g0064871 RchiOBHm_Chr6g0245321 RchiOBHm_Chr6g0245331 RchiOBHm_Chr6g0245341 RchiOBHm_Chr6g0245481 RchiOBHm_Chr6g0245501 RchiOBHm_Chr6g0245551 RchiOBHm_Chr6g0246391 RchiOBHm_Chr6g0246501 RchiOBHm_Chr6g0246541 RchiOBHm_Chr6g0246601 RchiOBHm_Chr6g0246671 RchiOBHm_Chr6g0246721 RchiOBHm_Chr6g0246751 RchiOBHm_Chr6g0246861 RchiOBHm_Chr6g0246881 RchiOBHm_Chr6g0246891 RchiOBHm_Chr6g0249221 RchiOBHm_Chr6g0249691 RchiOBHm_Chr6g0249721 RchiOBHm_Chr6g0249731 RchiOBHm_Chr6g0249751 RchiOBHm_Chr6g0249841 RchiOBHm_Chr6g0249881 RchiOBHm_Chr6g0249921 RchiOBHm_Chr6g0249931 RchiOBHm_Chr6g0249951 RchiOBHm_Chr6g0250011 RchiOBHm_Chr6g0250021 RchiOBHm_Chr6g0250081 RchiOBHm_Chr6g0250091 RchiOBHm_Chr6g0250131 RchiOBHm_Chr6g0250161 RchiOBHm_Chr6g0250201 RchiOBHm_Chr6g0250241 RchiOBHm_Chr6g0250291 RchiOBHm_Chr6g0250301 RchiOBHm_Chr6g0250371 RchiOBHm_Chr6g0250771 RchiOBHm_Chr6g0250981 RchiOBHm_Chr6g0251301 RchiOBHm_Chr6g0251321 RchiOBHm_Chr6g0251341 RchiOBHm_Chr6g0251441 RchiOBHm_Chr6g0251471 RchiOBHm_Chr6g0272741 RchiOBHm_Chr6g0276581 RchiOBHm_Chr6g0276591 RchiOBHm_Chr6g0276631 RchiOBHm_Chr6g0284581 RchiOBHm_Chr6g0284641 RchiOBHm_Chr6g0285091 RchiOBHm_Chr7g0217981
rosa_laevigata RLG00000002427 RLG00000003507 RLG00000008496 RLG00000012678 RLG00000012735 RLG00000012736 RLG00000013083 RLG00000013084 RLG00000013384 RLG00000013386 RLG00000013660 RLG00000015037 RLG00000015242 RLG00000015253 RLG00000015255 RLG00000015256 RLG00000015259 RLG00000015307 RLG00000015465 RLG00000015466 RLG00000015504 RLG00000015506 RLG00000015507 RLG00000015510 RLG00000015513 RLG00000015544 RLG00000015545 RLG00000015549 RLG00000015550 RLG00000015552 RLG00000016855 RLG00000016858 RLG00000016859 RLG00000018281 RLG00000018283 RLG00000022622 RLG00000023379 RLG00000023937 RLG00000024655 RLG00000026187 RLG00000026189 RLG00000026190 RLG00000026191 RLG00000026192 RLG00000027420 RLG00000027421 RLG00000027661 RLG00000028903 RLG00000028904 RLG00000030248 RLG00000035359 RLG00000035360 RLG00000035361 RLG00000035429 RLG00000035456 RLG00000035679 RLG00000035680 RLG00000035681 RLG00000035735 RLG00000035738 RLG00000035844 RLG00000036364
rosa_multiflora Rmu_co8335069.1_g000001 Rmu_co8396115.1_g000001 Rmu_co8448557.1_g000001 Rmu_co8510855.1_g000001 Rmu_sc0000110.1_g000004 Rmu_sc0000110.1_g000007 Rmu_sc0000110.1_g000018 Rmu_sc0000110.1_g000019 Rmu_sc0000110.1_g000022 Rmu_sc0000110.1_g000023 Rmu_sc0000110.1_g000033 Rmu_sc0000110.1_g000037 Rmu_sc0000110.1_g000039 Rmu_sc0000276.1_g000031 Rmu_sc0000276.1_g000034 Rmu_sc0000411.1_g000006 Rmu_sc0000411.1_g000007 Rmu_sc0000452.1_g000027 Rmu_sc0000471.1_g000009 Rmu_sc0000507.1_g000020 Rmu_sc0000694.1_g000018 Rmu_sc0000701.1_g000002 Rmu_sc0000701.1_g000009 Rmu_sc0000701.1_g000010 Rmu_sc0000704.1_g000001 Rmu_sc0000704.1_g000042 Rmu_sc0000704.1_g000043 Rmu_sc0000969.1_g000002 Rmu_sc0001001.1_g000003 Rmu_sc0001066.1_g000004 Rmu_sc0001066.1_g000019 Rmu_sc0001209.1_g000023 Rmu_sc0001209.1_g000040 Rmu_sc0001209.1_g000043 Rmu_sc0001237.1_g000018 Rmu_sc0001246.1_g000016 Rmu_sc0001293.1_g000008 Rmu_sc0001293.1_g000011 Rmu_sc0001293.1_g000022 Rmu_sc0001293.1_g000023 Rmu_sc0001373.1_g000014 Rmu_sc0001382.1_g000001 Rmu_sc0001738.1_g000024 Rmu_sc0002025.1_g000009 Rmu_sc0002025.1_g000012 Rmu_sc0002025.1_g000013 Rmu_sc0002093.1_g000004 Rmu_sc0002202.1_g000008 Rmu_sc0002202.1_g000010 Rmu_sc0002202.1_g000011 Rmu_sc0002202.1_g000018 Rmu_sc0002406.1_g000014 Rmu_sc0002478.1_g000003 Rmu_sc0002535.1_g000042 Rmu_sc0002587.1_g000021 Rmu_sc0002587.1_g000023 Rmu_sc0002587.1_g000028 Rmu_sc0002587.1_g000039 Rmu_sc0002587.1_g000044 Rmu_sc0002587.1_g000048 Rmu_sc0002587.1_g000049 Rmu_sc0002793.1_g000005 Rmu_sc0003060.1_g000003 Rmu_sc0003060.1_g000004 Rmu_sc0003060.1_g000005 Rmu_sc0003131.1_g000001 Rmu_sc0003131.1_g000032 Rmu_sc0003255.1_g000009 Rmu_sc0003255.1_g000017 Rmu_sc0003270.1_g000028 Rmu_sc0003293.1_g000004 Rmu_sc0003293.1_g000008 Rmu_sc0003293.1_g000010 Rmu_sc0003352.1_g000009 Rmu_sc0003352.1_g000012 Rmu_sc0003386.1_g000012 Rmu_sc0003387.1_g000003 Rmu_sc0003387.1_g000007 Rmu_sc0003665.1_g000002 Rmu_sc0003811.1_g000001 Rmu_sc0004049.1_g000001 Rmu_sc0004191.1_g000039 Rmu_sc0004691.1_g000008 Rmu_sc0005257.1_g000014 Rmu_sc0005257.1_g000020 Rmu_sc0005685.1_g000005 Rmu_sc0006032.1_g000010 Rmu_sc0006638.1_g000016 Rmu_sc0006878.1_g000005 Rmu_sc0007049.1_g000005 Rmu_sc0007049.1_g000011 Rmu_sc0007049.1_g000012 Rmu_sc0007049.1_g000013 Rmu_sc0007049.1_g000014 Rmu_sc0007383.1_g000001 Rmu_sc0007383.1_g000005 Rmu_sc0007383.1_g000012 Rmu_sc0007558.1_g000003 Rmu_sc0007558.1_g000005 Rmu_sc0007722.1_g000001 Rmu_sc0008209.1_g000002 Rmu_sc0008209.1_g000008 Rmu_sc0008242.1_g000013 Rmu_sc0008965.1_g000001 Rmu_sc0009002.1_g000002 Rmu_sc0009002.1_g000006 Rmu_sc0009002.1_g000007 Rmu_sc0009002.1_g000010 Rmu_sc0009002.1_g000011 Rmu_sc0009227.1_g000011 Rmu_sc0009369.1_g000008 Rmu_sc0009380.1_g000013 Rmu_sc0009451.1_g000011 Rmu_sc0009952.1_g000008 Rmu_sc0009991.1_g000004 Rmu_sc0010993.1_g000005 Rmu_sc0010993.1_g000006 Rmu_sc0012343.1_g000012 Rmu_sc0014236.1_g000002 Rmu_sc0014912.1_g000002 Rmu_sc0014912.1_g000003 Rmu_sc0019669.1_g000001 Rmu_sc0020903.1_g000007 Rmu_sc0021230.1_g000001 Rmu_sc0022147.1_g000001 Rmu_sc0028629.1_g000002 Rmu_sc0031029.1_g000001 Rmu_sc0038922.1_g000001 Rmu_sc0039683.1_g000001 Rmu_sc0039712.1_g000001 Rmu_sc0043027.1_g000001 Rmu_ssc0000009.1_g000002 Rmu_ssc0000009.1_g000004 Rmu_ssc0000309.1_g000010
rosa_roxburghii Rroxscaffold_1G00014850 Rroxscaffold_1G00016420 Rroxscaffold_1G00016430 Rroxscaffold_1G00016970 Rroxscaffold_1G00016980 Rroxscaffold_1G00017020 Rroxscaffold_2G00103000 Rroxscaffold_2G00103010 Rroxscaffold_2G00121260 Rroxscaffold_2G00127090 Rroxscaffold_2G00127120 Rroxscaffold_2G00143350 Rroxscaffold_2G00143360 Rroxscaffold_3G00218090 Rroxscaffold_3G00232940 Rroxscaffold_3G00241540 Rroxscaffold_3G00241550 Rroxscaffold_4G00278190 Rroxscaffold_4G00278220 Rroxscaffold_4G00278240 Rroxscaffold_4G00278260 Rroxscaffold_4G00291120 Rroxscaffold_4G00291140 Rroxscaffold_4G00291150 Rroxscaffold_4G00291160 Rroxscaffold_4G00291180 Rroxscaffold_4G00291220 Rroxscaffold_4G00294350 Rroxscaffold_4G00304090 Rroxscaffold_4G00309820 Rroxscaffold_4G00314470 Rroxscaffold_6G00392280 Rroxscaffold_6G00399770 Rroxscaffold_6G00399780 Rroxscaffold_6G00399800 Rroxscaffold_6G00400110 Rroxscaffold_6G00400130 Rroxscaffold_6G00415240 Rroxscaffold_7G00183750 Rroxscaffold_7G00184040 Rroxscaffold_7G00184570 Rroxscaffold_7G00184580 Rroxscaffold_7G00192150 Rroxscaffold_7G00192460 Rroxscaffold_7G00196030 Rroxscaffold_7G00211080 Rroxscaffold_7G00214480 Rroxscaffold_7G00214490 Rroxscaffold_7G00214570 Rroxscaffold_7G00214580 Rroxscaffold_7G00214590 Rroxscaffold_7G00214610 Rroxscaffold_7G00214620 Rroxscaffold_7G00214790 Rroxscaffold_7G00216630 Rroxscaffold_7G00216640 Rroxscaffold_7G00216670 Rroxscaffold_7G00216680 Rroxscaffold_7G00216690 Rroxscaffold_7G00216730 Rroxscaffold_7G00216770 Rroxscaffold_7G00216780 Rroxscaffold_7G00216820 Rroxscaffold_7G00216830 Rroxscaffold_7G00217280 Rroxscaffold_7G00217310 Rroxscaffold_7G00217320 Rroxscaffold_7G00217330
rosa_rugosa Rorug01G0040400 Rorug01G0173300 Rorug01G0173400 Rorug01G0296100 Rorug01G0296200 Rorug01G0296300 Rorug01G0296400 Rorug01G0322300 Rorug01G0432900 Rorug01G0433100 Rorug01G0433200 Rorug01G0433500 Rorug02G0054900 Rorug02G0077900 Rorug02G0078000 Rorug02G0078100 Rorug02G0207300 Rorug02G0242200 Rorug02G0242300 Rorug03G0075500 Rorug03G0075500 Rorug03G0194300 Rorug05G0329100 Rorug05G0329300 Rorug05G0360000 Rorug05G0360000 Rorug05G0360300 Rorug05G0360400.1 Rorug05G0360500 Rorug05G0364200 Rorug05G0366200 Rorug05G0366300 Rorug05G0366400 Rorug05G0366600 Rorug05G0376400 Rorug05G0376500 Rorug05G0421100 Rorug05G0494600 Rorug05G0494800 Rorug05G0494900 Rorug05G0495100 Rorug05G0495200 Rorug05G0495900 Rorug05G0498200 Rorug05G0498200 Rorug05G0498300.1 Rorug05G0499100 Rorug05G0501700 Rorug05G0501800 Rorug05G0501900 Rorug05G0513800 Rorug05G0514100 Rorug05G0514200 Rorug05G0514200 Rorug05G0514500 Rorug05G0519200 Rorug05G0519300.1 Rorug05G0519400 Rorug05G0519400 Rorug05G0520600 Rorug05G0520700 Rorug05G0520800 Rorug05G0521300 Rorug05G0521400 Rorug05G0521500 Rorug05G0550800 Rorug06G0070400 Rorug06G0070500 Rorug06G0070600 Rorug06G0099500 Rorug06G0099600 Rorug06G0102100 Rorug06G0102200 Rorug06G0102300 Rorug06G0102300 Rorug06G0102400 Rorug06G0162500 Rorug06G0164500 Rorug06G0164600 Rorug06G0164800 Rorug06G0170600 Rorug07G0172900 Rorug07G0172900 Rorug07G0172900 Rorug07G0173000
rosa_samantha Rh1BG156400 Rh1BG156500 Rh1BG156600 Rh1BG292400 Rh1BG413500 Rh1BG413800 Rh1BG414100 Rh1BG414200 Rh1BG414400 Rh1CG059400 Rh1CG309000 Rh1CG428300 Rh1CG428400 Rh2BG129800 Rh2BG273700 Rh2CG131000 Rh2DG131300 Rh3AG245200 Rh3AG245600 Rh3BG139100 Rh3BG280400 Rh3BG280500 Rh3CG141200 Rh3CG149500 Rh3CG275400 Rh3CG275800 Rh3CG276500 Rh3CG276800 Rh3DG140400 Rh3DG272100 Rh3DG272300 Rh3DG272400 Rh3DG272700 Rh3DG272800 Rh3DG272900 Rh5AG099100 Rh5AG424200 Rh5AG435200 Rh5BG411900 Rh5BG439500 Rh5CG108000 Rh5CG436900 Rh5CG457800 Rh5CG462200 Rh5CG462300 Rh6AG033600 Rh6AG186700 Rh6BG190100 Rh6BG215300 Rh6BG217600 Rh6BG217800 Rh6CG188800 Rh6CG284800 Rh6DG003400 Rh6DG008400 Rh6DG008700 Rh6DG008800 Rh6DG009100 Rh6DG009400 Rh6DG025100 Rh6DG180300 Rh6DG209700 Rh6DG210100 Rh6DG272100 Rh6DG272300 Rh6DG273000 Rh7BG305400
rosa_wichuraiana Rw0G010970 Rw0G011460 Rw0G017090 Rw0G023140 Rw1G007890 Rw1G010200 Rw1G015630 Rw1G015640 Rw1G029350 Rw1G029370 Rw1G029380 Rw1G029390 Rw1G029400 Rw1G041290 Rw1G041560 Rw2G009760 Rw2G009770 Rw2G020640 Rw2G021670 Rw2G021690 Rw2G024060 Rw3G011380 Rw3G021890 Rw3G021910 Rw3G021940 Rw3G021950 Rw3G021960 Rw5G037070 Rw5G037080 Rw5G037090 Rw5G039330 Rw5G039890 Rw5G039900 Rw5G039920 Rw5G040740 Rw6G000500 Rw6G000510 Rw6G000520 Rw6G000550 Rw6G000570 Rw6G000580 Rw6G000610 Rw6G000820 Rw6G001070 Rw6G001090 Rw6G001100 Rw6G001170 Rw6G001180 Rw6G001260 Rw6G001270 Rw6G001280 Rw6G001300 Rw6G002450 Rw6G002470 Rw6G002500 Rw6G002830 Rw6G002870 Rw6G003000 Rw6G003080 Rw6G016110 Rw6G018400 Rw6G018590 Rw6G018610 Rw6G023840 Rw6G023880 Rw6G024250 Rw6G024260 Rw7G026620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3236
AarI CACCTGC 2 cut(s) 1500, 3612
AasI GACNNNNNNGTC 1 cut(s) 5058
AatII GACGTC 2 cut(s) 624, 1542
Acc36I ACCTGC 4 cut(s) 1500, 1698, 3612, 3837
AccB1I GGYRCC 2 cut(s) 2165, 4304
AccB7I CCANNNNNTGG 4 cut(s) 1465, 3577, 5359, 5537
AccBSI CCGCTC 1 cut(s) 680
AccI GTMKAC 3 cut(s) 242, 3729, 5020
AccII CGCG 1 cut(s) 3597
AccIII TCCGGA 1 cut(s) 4873
AclWI GGATC 6 cut(s) 134, 320, 662, 3293, 5522, 5574
AcoI YGGCCR 2 cut(s) 5038, 5157
AcvI CACGTG 1 cut(s) 2158
AcyI GRCGYC 2 cut(s) 621, 1539
AfaI GTAC 8 cut(s) 339, 535, 1161, 1356, 2055, 3273, 4194, 5345
AfiI CCNNNNNNNGG 7 cut(s) 1465, 1696, 3577, 3835, 4331, 5359, 5537
AflII CTTAAG 2 cut(s) 1049, 3161
AflIII ACRYGT 3 cut(s) 1546, 1825, 3658
AhdI GACNNNNNGTC 1 cut(s) 1746
AjiI CACGTC 5 cut(s) 1621, 1627, 3733, 3739, 3766
AjnI CCWGG 2 cut(s) 5320, 5389
AleI CACNNNNGTG 1 cut(s) 5355
AloI GAACNNNNNNTCC 4 cut(s) 1380, 1412, 3492, 3524
Alw21I GWGCWC 4 cut(s) 8, 17, 1210, 3322
Alw26I GTCTC 3 cut(s) 1497, 2036, 3951
Alw44I GTGCAC 2 cut(s) 1206, 3318
AlwI GGATC 6 cut(s) 134, 320, 662, 3293, 5522, 5574
AlwNI CAGNNNCTG 2 cut(s) 1789, 3230
Ama87I CYCGRG 2 cut(s) 4067, 5027
Aor13HI TCCGGA 1 cut(s) 4873
AoxI GGCC 6 cut(s) 208, 5038, 5157, 5421, 5496, 5806
ApaLI GTGCAC 2 cut(s) 1206, 3318
ApeKI GCWGC 9 cut(s) 185, 304, 583, 1789, 3928, 5079, 5383, 5776, 5837
ArsI GACNNNNNNTTYG 4 cut(s) 2926, 2958, 4849, 4881
AseI ATTAAT 1 cut(s) 5793
AspLEI GCGC 1 cut(s) 5900
AspS9I GGNCC 5 cut(s) 5318, 5496, 5636, 5722, 5903
AsuC2I CCSGG 1 cut(s) 3618
AsuHPI GGTGA 7 cut(s) 12, 374, 410, 2880, 4490, 5342, 5876
AsuNHI GCTAGC 1 cut(s) 5129
AvaI CYCGRG 2 cut(s) 4067, 5027
AvaII GGWCC 4 cut(s) 5318, 5636, 5722, 5903
AxyI CCTNAGG 2 cut(s) 1695, 3834
BaeGI GKGCMC 2 cut(s) 1210, 3322
BalI TGGCCA 1 cut(s) 5159
BanI GGYRCC 2 cut(s) 2165, 4304
BanII GRGCYC 1 cut(s) 17
BauI CACGAG 2 cut(s) 2033, 2246
BbrPI CACGTG 1 cut(s) 2158
Bbv12I GWGCWC 4 cut(s) 8, 17, 1210, 3322
BbvI GCAGC 9 cut(s) 172, 291, 595, 1776, 3915, 5066, 5370, 5788, 5849
BceAI ACGGC 1 cut(s) 5911
BciT130I CCWGG 2 cut(s) 5322, 5391
BciVI GTATCC 1 cut(s) 61
BcnI CCSGG 1 cut(s) 3618
BcoDI GTCTC 3 cut(s) 1497, 2036, 3951
BfmI CTRYAG 1 cut(s) 5376
BfrI CTTAAG 2 cut(s) 1049, 3161
BfuAI ACCTGC 4 cut(s) 1500, 1698, 3612, 3837
BfuI GTATCC 1 cut(s) 61
BglII AGATCT 7 cut(s) 425, 1186, 1409, 2242, 2716, 3521, 4378
BisI GCNGC 9 cut(s) 186, 305, 584, 1790, 3929, 5080, 5384, 5777, 5838
BlsI GCNGC 9 cut(s) 187, 306, 585, 1791, 3930, 5081, 5385, 5778, 5839
BmcAI AGTACT 3 cut(s) 1161, 1356, 3273
Bme1390I CCNGG 3 cut(s) 3618, 5322, 5391
Bme18I GGWCC 4 cut(s) 5318, 5636, 5722, 5903
BmeRI GACNNNNNGTC 1 cut(s) 1746
BmeT110I CYCGRG 2 cut(s) 4067, 5027
BmgBI CACGTC 5 cut(s) 1621, 1627, 3733, 3739, 3766
BmgT120I GGNCC 5 cut(s) 5318, 5496, 5636, 5722, 5903
BmiI GGNNCC 7 cut(s) 835, 1688, 1845, 2167, 3827, 4306, 5905
BmrFI CCNGG 3 cut(s) 3618, 5322, 5391
BmrI ACTGGG 6 cut(s) 1172, 1229, 3284, 3341, 5677, 5901
BmsI GCATC 8 cut(s) 245, 694, 1434, 3546, 3856, 4821, 5043, 5395
BmtI GCTAGC 1 cut(s) 5133
BmuI ACTGGG 6 cut(s) 1172, 1229, 3284, 3341, 5677, 5901
BoxI GACNNNNGTC 2 cut(s) 2127, 4266
BplI GAGNNNNNCTC 6 cut(s) 682, 714, 1867, 1899, 4006, 4038
BpmI CTGGAG 1 cut(s) 156
BpuEI CTTGAG 9 cut(s) 559, 1913, 2270, 2461, 2492, 2693, 3863, 4597, 5294
BpuMI CCSGG 1 cut(s) 3618
BsaAI YACGTR 3 cut(s) 2057, 2158, 4196
BsaBI GATNNNNATC 3 cut(s) 324, 2721, 4926
BsaHI GRCGYC 2 cut(s) 621, 1539
BsaJI CCNNGG 2 cut(s) 26, 3595
BsaWI WCCGGW 1 cut(s) 4873
BsaXI ACNNNNNCTCC 8 cut(s) 346, 376, 398, 428, 1605, 1635, 3717, 3747
Bsc4I CCNNNNNNNGG 7 cut(s) 1465, 1696, 3577, 3835, 4331, 5359, 5537
Bse118I RCCGGY 2 cut(s) 2168, 4307
Bse21I CCTNAGG 2 cut(s) 1695, 3834
Bse3DI GCAATG 4 cut(s) 1308, 3420, 5255, 5482
Bse8I GATNNNNATC 3 cut(s) 324, 2721, 4926
BseAI TCCGGA 1 cut(s) 4873
BseBI CCWGG 2 cut(s) 5322, 5391
BseDI CCNNGG 2 cut(s) 26, 3595
BseJI GATNNNNATC 3 cut(s) 324, 2721, 4926
BseLI CCNNNNNNNGG 7 cut(s) 1465, 1696, 3577, 3835, 4331, 5359, 5537
BseMI GCAATG 4 cut(s) 1308, 3420, 5255, 5482
BseMII CTCAG 5 cut(s) 468, 1796, 1865, 4004, 5014
BseRI GAGGAG 8 cut(s) 15, 2179, 2348, 4301, 4484, 4741, 5435, 5765
BseSI GKGCMC 2 cut(s) 1210, 3322
BseXI GCAGC 9 cut(s) 172, 291, 595, 1776, 3915, 5066, 5370, 5788, 5849
BseYI CCCAGC 1 cut(s) 1504
BsgI GTGCAG 1 cut(s) 1534
Bsh1236I CGCG 1 cut(s) 3597
Bsh1285I CGRYCG 1 cut(s) 1605
BshFI GGCC 6 cut(s) 210, 5040, 5159, 5423, 5498, 5808
BshNI GGYRCC 2 cut(s) 2165, 4304
BsiEI CGRYCG 1 cut(s) 1605
BsiHKAI GWGCWC 4 cut(s) 8, 17, 1210, 3322
BsiHKCI CYCGRG 2 cut(s) 4067, 5027
BsiSI CCGG 8 cut(s) 2169, 2543, 2756, 2951, 3617, 4308, 4679, 4874
BslFI GGGAC 2 cut(s) 1713, 3852
BslI CCNNNNNNNGG 7 cut(s) 1465, 1696, 3577, 3835, 4331, 5359, 5537
BsmAI GTCTC 3 cut(s) 1497, 2036, 3951
BsmFI GGGAC 2 cut(s) 1713, 3852
BsmI GAATGC 7 cut(s) 1070, 1072, 2205, 3182, 4341, 4554, 4909
BsnI GGCC 6 cut(s) 210, 5040, 5159, 5423, 5498, 5808
BsoBI CYCGRG 2 cut(s) 4067, 5027
Bsp1286I GDGCHC 4 cut(s) 8, 17, 1210, 3322
Bsp13I TCCGGA 1 cut(s) 4873
BspANI GGCC 6 cut(s) 210, 5040, 5159, 5423, 5498, 5808
BspCNI CTCAG 5 cut(s) 467, 1795, 1866, 4005, 5013
BspEI TCCGGA 1 cut(s) 4873
BspFNI CGCG 1 cut(s) 3597
BspHI TCATGA 2 cut(s) 700, 1471
BspLI GGNNCC 7 cut(s) 835, 1688, 1845, 2167, 3827, 4306, 5905
BspMI ACCTGC 4 cut(s) 1500, 1698, 3612, 3837
BspOI GCTAGC 1 cut(s) 5133
BspPI GGATC 6 cut(s) 134, 320, 662, 3293, 5522, 5574
BspQI GCTCTTC 1 cut(s) 22
BspT107I GGYRCC 2 cut(s) 2165, 4304
BspTI CTTAAG 2 cut(s) 1049, 3161
BsrBI CCGCTC 1 cut(s) 680
BsrDI GCAATG 4 cut(s) 1308, 3420, 5255, 5482
BsrFI RCCGGY 2 cut(s) 2168, 4307
BssAI RCCGGY 2 cut(s) 2168, 4307
BssECI CCNNGG 2 cut(s) 26, 3595
BssNI GRCGYC 2 cut(s) 621, 1539
BssSI CACGAG 2 cut(s) 2033, 2246
Bst2BI CACGAG 2 cut(s) 2033, 2246
Bst2UI CCWGG 2 cut(s) 5322, 5391
Bst6I CTCTTC 7 cut(s) 22, 1001, 1177, 1281, 3289, 3331, 3393
BstACI GRCGYC 2 cut(s) 621, 1539
BstAFI CTTAAG 2 cut(s) 1049, 3161
BstAPI GCANNNNNTGC 3 cut(s) 182, 1453, 3565
BstBAI YACGTR 3 cut(s) 2057, 2158, 4196
BstC8I GCNNGC 5 cut(s) 2047, 2627, 5084, 5131, 5425
BstDSI CCRYGG 1 cut(s) 3595
BstEII GGTNACC 2 cut(s) 1082, 3194
BstENI CCTNNNNNAGG 2 cut(s) 1694, 3833
BstFNI CGCG 1 cut(s) 3597
BstHHI GCGC 1 cut(s) 5900
BstMAI GTCTC 3 cut(s) 1497, 2036, 3951
BstMCI CGRYCG 1 cut(s) 1605
BstMWI GCNNNNNNNGC 5 cut(s) 12, 182, 1453, 3565, 5858
BstNI CCWGG 2 cut(s) 5322, 5391
BstNSI RCATGY 6 cut(s) 1317, 1550, 1829, 2629, 3429, 3662
BstPAI GACNNNNGTC 2 cut(s) 2127, 4266
BstPI GGTNACC 2 cut(s) 1082, 3194
BstSCI CCNGG 3 cut(s) 3616, 5320, 5389
BstSFI CTRYAG 1 cut(s) 5376
BstSLI GKGCMC 2 cut(s) 1210, 3322
BstUI CGCG 1 cut(s) 3597
BstV1I GCAGC 9 cut(s) 172, 291, 595, 1776, 3915, 5066, 5370, 5788, 5849
BstX2I RGATCY 8 cut(s) 425, 1186, 1409, 2242, 2716, 3298, 3521, 4378
BstXI CCANNNNNNTGG 2 cut(s) 3309, 5939
BstYI RGATCY 8 cut(s) 425, 1186, 1409, 2242, 2716, 3298, 3521, 4378
Bsu36I CCTNAGG 2 cut(s) 1695, 3834
BsuI GTATCC 1 cut(s) 61
BsuRI GGCC 6 cut(s) 210, 5040, 5159, 5423, 5498, 5808
BtgI CCRYGG 1 cut(s) 3595
BtrI CACGTC 5 cut(s) 1621, 1627, 3733, 3739, 3766
BtsI GCAGTG 6 cut(s) 99, 2056, 2482, 2695, 4195, 4405
BveI ACCTGC 4 cut(s) 1500, 1698, 3612, 3837
Cac8I GCNNGC 5 cut(s) 2047, 2627, 5084, 5131, 5425
CaiI CAGNNNCTG 2 cut(s) 1789, 3230
CciI TCATGA 2 cut(s) 700, 1471
CfoI GCGC 1 cut(s) 5900
Cfr10I RCCGGY 2 cut(s) 2168, 4307
Cfr13I GGNCC 5 cut(s) 5318, 5496, 5636, 5722, 5903
Cfr42I CCGCGG 1 cut(s) 3598
CpoI CGGWCCG 2 cut(s) 5636, 5722
Csp6I GTAC 8 cut(s) 338, 534, 1160, 1355, 2054, 3272, 4193, 5344
CspI CGGWCCG 2 cut(s) 5636, 5722
CviQI GTAC 8 cut(s) 338, 534, 1160, 1355, 2054, 3272, 4193, 5344
DraI TTTAAA 3 cut(s) 1912, 3024, 4995
DrdI GACNNNNNNGTC 1 cut(s) 5058
DriI GACNNNNNGTC 1 cut(s) 1746
DseDI GACNNNNNNGTC 1 cut(s) 5058
EaeI YGGCCR 2 cut(s) 5038, 5157
Eam1104I CTCTTC 7 cut(s) 22, 1001, 1177, 1281, 3289, 3331, 3393
Eam1105I GACNNNNNGTC 1 cut(s) 1746
EarI CTCTTC 7 cut(s) 22, 1001, 1177, 1281, 3289, 3331, 3393
EciI GGCGGA 1 cut(s) 1472
Ecl136II GAGCTC 1 cut(s) 15
Eco147I AGGCCT 1 cut(s) 5808
Eco24I GRGCYC 1 cut(s) 17
Eco32I GATATC 1 cut(s) 5629
Eco47I GGWCC 4 cut(s) 5318, 5636, 5722, 5903
Eco53kI GAGCTC 1 cut(s) 15
Eco72I CACGTG 1 cut(s) 2158
Eco81I CCTNAGG 2 cut(s) 1695, 3834
Eco88I CYCGRG 2 cut(s) 4067, 5027
Eco91I GGTNACC 2 cut(s) 1082, 3194
EcoICRI GAGCTC 1 cut(s) 15
EcoNI CCTNNNNNAGG 2 cut(s) 1694, 3833
EcoO109I RGGNCCY 1 cut(s) 5903
EcoO65I GGTNACC 2 cut(s) 1082, 3194
EcoRI GAATTC 3 cut(s) 463, 2858, 3867
EcoRII CCWGG 2 cut(s) 5320, 5389
EcoRV GATATC 1 cut(s) 5629
EcoT22I ATGCAT 3 cut(s) 238, 1072, 1449
EcoT38I GRGCYC 1 cut(s) 17
FalI AAGNNNNNCTT 6 cut(s) 1086, 1118, 2973, 3005, 4963, 4995
FaqI GGGAC 2 cut(s) 1713, 3852
FauI CCCGC 4 cut(s) 644, 3590, 5273, 5466
FblI GTMKAC 3 cut(s) 242, 3729, 5020
Fnu4HI GCNGC 9 cut(s) 186, 305, 584, 1790, 3929, 5080, 5384, 5777, 5838
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 9 cut(s) 186, 305, 584, 1790, 3929, 5080, 5384, 5777, 5838
GlaI GCGC 1 cut(s) 5899
GluI GCNGC 9 cut(s) 186, 305, 584, 1790, 3929, 5080, 5384, 5777, 5838
GsaI CCCAGC 1 cut(s) 1508
GsuI CTGGAG 1 cut(s) 156
HaeIII GGCC 6 cut(s) 210, 5040, 5159, 5423, 5498, 5808
HapII CCGG 8 cut(s) 2169, 2543, 2756, 2951, 3617, 4308, 4679, 4874
HhaI GCGC 1 cut(s) 5900
Hin1I GRCGYC 2 cut(s) 621, 1539
Hin6I GCGC 1 cut(s) 5898
HinP1I GCGC 1 cut(s) 5898
HincII GTYRAC 5 cut(s) 243, 1972, 4036, 5206, 5555
HindII GTYRAC 5 cut(s) 243, 1972, 4036, 5206, 5555
HpaI GTTAAC 1 cut(s) 5206
HpaII CCGG 8 cut(s) 2169, 2543, 2756, 2951, 3617, 4308, 4679, 4874
HphI GGTGA 7 cut(s) 12, 374, 410, 2880, 4490, 5342, 5876
Hpy99I CGWCG 1 cut(s) 244
HpyF10VI GCNNNNNNNGC 5 cut(s) 12, 182, 1453, 3565, 5858
Hsp92I GRCGYC 2 cut(s) 621, 1539
HspAI GCGC 1 cut(s) 5898
Kpn2I TCCGGA 1 cut(s) 4873
KspAI GTTAAC 1 cut(s) 5206
KspI CCGCGG 1 cut(s) 3598
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 6 cut(s) 833, 1461, 1843, 3573, 4288, 5752
Lsp1109I GCAGC 9 cut(s) 172, 291, 595, 1776, 3915, 5066, 5370, 5788, 5849
LweI GCATC 8 cut(s) 245, 694, 1434, 3546, 3856, 4821, 5043, 5395
MbiI CCGCTC 1 cut(s) 680
MfeI CAATTG 3 cut(s) 189, 1980, 4119
MflI RGATCY 8 cut(s) 425, 1186, 1409, 2242, 2716, 3298, 3521, 4378
MhlI GDGCHC 4 cut(s) 8, 17, 1210, 3322
MlsI TGGCCA 1 cut(s) 5159
MluNI TGGCCA 1 cut(s) 5159
MmeI TCCRAC 2 cut(s) 87, 544
Mox20I TGGCCA 1 cut(s) 5159
Mph1103I ATGCAT 3 cut(s) 238, 1072, 1449
MroI TCCGGA 1 cut(s) 4873
MscI TGGCCA 1 cut(s) 5159
MslI CAYNNNNRTG 7 cut(s) 1592, 2160, 3704, 4299, 5118, 5355, 5820
Msp20I TGGCCA 1 cut(s) 5159
MspA1I CMGCKG 1 cut(s) 3597
MspCI CTTAAG 2 cut(s) 1049, 3161
MspI CCGG 8 cut(s) 2169, 2543, 2756, 2951, 3617, 4308, 4679, 4874
MspR9I CCNGG 3 cut(s) 3618, 5322, 5391
MunI CAATTG 3 cut(s) 189, 1980, 4119
Mva1269I GAATGC 7 cut(s) 1070, 1072, 2205, 3182, 4341, 4554, 4909
MvaI CCWGG 2 cut(s) 5322, 5391
MvnI CGCG 1 cut(s) 3597
MwoI GCNNNNNNNGC 5 cut(s) 12, 182, 1453, 3565, 5858
NciI CCSGG 1 cut(s) 3618
NheI GCTAGC 1 cut(s) 5129
NlaIV GGNNCC 7 cut(s) 835, 1688, 1845, 2167, 3827, 4306, 5905
NmeAIII GCCGAG 1 cut(s) 4831
NsiI ATGCAT 3 cut(s) 238, 1072, 1449
NspI RCATGY 6 cut(s) 1317, 1550, 1829, 2629, 3429, 3662
OliI CACNNNNGTG 1 cut(s) 5355
PaeI GCATGC 1 cut(s) 2629
PaeR7I CTCGAG 1 cut(s) 4067
PagI TCATGA 2 cut(s) 700, 1471
PaqCI CACCTGC 2 cut(s) 1500, 3612
PceI AGGCCT 1 cut(s) 5808
PciI ACATGT 3 cut(s) 1546, 1825, 3658
PciSI GCTCTTC 1 cut(s) 22
PcsI WCGNNNNNNNCGW 2 cut(s) 1748, 3887
PctI GAATGC 7 cut(s) 1070, 1072, 2205, 3182, 4341, 4554, 4909
PflMI CCANNNNNTGG 4 cut(s) 1465, 3577, 5359, 5537
PfoI TCCNGGA 1 cut(s) 5320
PkrI GCNGC 9 cut(s) 187, 306, 585, 1791, 3930, 5081, 5385, 5778, 5839
PmaCI CACGTG 1 cut(s) 2158
PmlI CACGTG 1 cut(s) 2158
Ppu21I YACGTR 3 cut(s) 2057, 2158, 4196
PpuMI RGGWCCY 1 cut(s) 5903
PscI ACATGT 3 cut(s) 1546, 1825, 3658
PshAI GACNNNNGTC 2 cut(s) 2127, 4266
PshBI ATTAAT 1 cut(s) 5793
PsiI TTATAA 1 cut(s) 3236
Psp124BI GAGCTC 1 cut(s) 17
Psp5II RGGWCCY 1 cut(s) 5903
Psp6I CCWGG 2 cut(s) 5320, 5389
PspCI CACGTG 1 cut(s) 2158
PspEI GGTNACC 2 cut(s) 1082, 3194
PspFI CCCAGC 1 cut(s) 1504
PspGI CCWGG 2 cut(s) 5320, 5389
PspN4I GGNNCC 7 cut(s) 835, 1688, 1845, 2167, 3827, 4306, 5905
PspPI GGNCC 5 cut(s) 5318, 5496, 5636, 5722, 5903
PspPPI RGGWCCY 1 cut(s) 5903
PstNI CAGNNNCTG 2 cut(s) 1789, 3230
PsuI RGATCY 8 cut(s) 425, 1186, 1409, 2242, 2716, 3298, 3521, 4378
RsaI GTAC 8 cut(s) 339, 535, 1161, 1356, 2055, 3273, 4194, 5345
RsaNI GTAC 8 cut(s) 338, 534, 1160, 1355, 2054, 3272, 4193, 5344
RseI CAYNNNNRTG 7 cut(s) 1592, 2160, 3704, 4299, 5118, 5355, 5820
Rsr2I CGGWCCG 2 cut(s) 5636, 5722
RsrII CGGWCCG 2 cut(s) 5636, 5722
SacI GAGCTC 1 cut(s) 17
SacII CCGCGG 1 cut(s) 3598
SalI GTCGAC 1 cut(s) 241
SapI GCTCTTC 1 cut(s) 22
SatI GCNGC 9 cut(s) 186, 305, 584, 1790, 3929, 5080, 5384, 5777, 5838
Sau96I GGNCC 5 cut(s) 5318, 5496, 5636, 5722, 5903
ScaI AGTACT 3 cut(s) 1161, 1356, 3273
ScrFI CCNGG 3 cut(s) 3618, 5322, 5391
SduI GDGCHC 4 cut(s) 8, 17, 1210, 3322
SfaNI GCATC 8 cut(s) 245, 694, 1434, 3546, 3856, 4821, 5043, 5395
SfcI CTRYAG 1 cut(s) 5376
Sfr274I CTCGAG 1 cut(s) 4067
Sfr303I CCGCGG 1 cut(s) 3598
SgrBI CCGCGG 1 cut(s) 3598
SinI GGWCC 4 cut(s) 5318, 5636, 5722, 5903
SlaI CTCGAG 1 cut(s) 4067
SmiI ATTTAAAT 1 cut(s) 4995
SmiMI CAYNNNNRTG 7 cut(s) 1592, 2160, 3704, 4299, 5118, 5355, 5820
SphI GCATGC 1 cut(s) 2629
SseBI AGGCCT 1 cut(s) 5808
SspI AATATT 4 cut(s) 917, 3029, 4435, 5519
SstI GAGCTC 1 cut(s) 17
StuI AGGCCT 1 cut(s) 5808
StyD4I CCNGG 3 cut(s) 3616, 5320, 5389
SwaI ATTTAAAT 1 cut(s) 4995
TaqII GACCGA 1 cut(s) 1619
TatI WGTACW 3 cut(s) 1159, 1354, 3271
TseI GCWGC 9 cut(s) 185, 304, 583, 1789, 3928, 5079, 5383, 5776, 5837
TspGWI ACGGA 6 cut(s) 1446, 1740, 1741, 1856, 3879, 5714
Van91I CCANNNNNTGG 4 cut(s) 1465, 3577, 5359, 5537
Vha464I CTTAAG 2 cut(s) 1049, 3161
VneI GTGCAC 2 cut(s) 1206, 3318
VpaK11BI GGWCC 4 cut(s) 5318, 5636, 5722, 5903
VspI ATTAAT 1 cut(s) 5793
XagI CCTNNNNNAGG 2 cut(s) 1694, 3833
XbaI TCTAGA 4 cut(s) 1276, 2143, 3388, 5048
XceI RCATGY 6 cut(s) 1317, 1550, 1829, 2629, 3429, 3662
XcmI CCANNNNNNNNNTGG 1 cut(s) 3050
XhoI CTCGAG 1 cut(s) 4067
XmiI GTMKAC 3 cut(s) 242, 3729, 5020
ZraI GACGTC 2 cut(s) 622, 1540
ZrmI AGTACT 3 cut(s) 1161, 1356, 3273
Zsp2I ATGCAT 3 cut(s) 238, 1072, 1449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.