TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR_2 | PF13676 | 1 - 67 | 6.5e-07 | TIR domain |
| TIR | PF01582 | 2 - 139 | 2.1e-39 | TIR domain |
| NB-ARC | PF00931 | 150 - 317 | 1.8e-19 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 385 - 455 | 1.4e-12 | Disease resistance protein Roq1-like, winged-helix domain |
| C-JID | PF20160 | 853 - 989 | 4.8e-12 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 3129 |
| Acc36I | ACCTGC | 1 cut(s) | 1072 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2920 |
| AccI | GTMKAC | 1 cut(s) | 1828 |
| AccII | CGCG | 1 cut(s) | 2182 |
| AccIII | TCCGGA | 2 cut(s) | 40, 2575 |
| AciI | CCGC | 4 cut(s) | 701, 2692, 2792, 3099 |
| AclI | AACGTT | 1 cut(s) | 2988 |
| AclWI | GGATC | 3 cut(s) | 188, 642, 1367 |
| AcuI | CTGAAG | 7 cut(s) | 93, 402, 905, 928, 1768, 2060, 2483 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 2069, 2398, 2920, 3071, 3110 |
| AflII | CTTAAG | 1 cut(s) | 2519 |
| AflIII | ACRYGT | 1 cut(s) | 1468 |
| AgeI | ACCGGT | 1 cut(s) | 2704 |
| AhlI | ACTAGT | 1 cut(s) | 2371 |
| AjiI | CACGTC | 1 cut(s) | 1420 |
| AjnI | CCWGG | 6 cut(s) | 894, 1375, 1422, 1501, 2531, 2560 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 790, 822 |
| Alw21I | GWGCWC | 2 cut(s) | 18, 363 |
| Alw26I | GTCTC | 6 cut(s) | 202, 250, 671, 1580, 2367, 3231 |
| AlwI | GGATC | 3 cut(s) | 188, 642, 1367 |
| Ama87I | CYCGRG | 1 cut(s) | 1577 |
| Aor13HI | TCCGGA | 2 cut(s) | 40, 2575 |
| AoxI | GGCC | 3 cut(s) | 1339, 2911, 3073 |
| ApeKI | GCWGC | 4 cut(s) | 296, 1247, 2134, 3041 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2345, 2377 |
| AsiGI | ACCGGT | 1 cut(s) | 2704 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 918, 1350 |
| AspLEI | GCGC | 2 cut(s) | 2184, 2662 |
| AspS9I | GGNCC | 6 cut(s) | 775, 892, 1339, 2114, 2911, 3101 |
| AsuC2I | CCSGG | 1 cut(s) | 1778 |
| AsuHPI | GGTGA | 6 cut(s) | 232, 845, 889, 1553, 2293, 2807 |
| AsuII | TTCGAA | 1 cut(s) | 2711 |
| AvaI | CYCGRG | 1 cut(s) | 1577 |
| AvaII | GGWCC | 4 cut(s) | 775, 892, 2114, 3101 |
| AxyI | CCTNAGG | 1 cut(s) | 1907 |
| BanII | GRGCYC | 3 cut(s) | 18, 363, 3192 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1812, 1844 |
| BauI | CACGAG | 1 cut(s) | 2364 |
| BbsI | GAAGAC | 5 cut(s) | 1004, 1413, 2001, 2066, 3272 |
| Bbv12I | GWGCWC | 2 cut(s) | 18, 363 |
| BbvCI | CCTCAGC | 1 cut(s) | 3138 |
| BbvI | GCAGC | 4 cut(s) | 283, 1234, 2121, 3053 |
| BccI | CCATC | 4 cut(s) | 1136, 1565, 2744, 2796 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 447, 481, 724, 758 |
| BciT130I | CCWGG | 6 cut(s) | 896, 1377, 1424, 1503, 2533, 2562 |
| BclI | TGATCA | 1 cut(s) | 2587 |
| BcnI | CCSGG | 1 cut(s) | 1778 |
| BcoDI | GTCTC | 6 cut(s) | 202, 250, 671, 1580, 2367, 3231 |
| BcuI | ACTAGT | 1 cut(s) | 2371 |
| BfmI | CTRYAG | 2 cut(s) | 343, 1293 |
| BfrI | CTTAAG | 1 cut(s) | 2519 |
| BfuAI | ACCTGC | 1 cut(s) | 1072 |
| BglII | AGATCT | 3 cut(s) | 884, 1280, 1798 |
| BisI | GCNGC | 4 cut(s) | 297, 1248, 2135, 3042 |
| BlsI | GCNGC | 4 cut(s) | 298, 1249, 2136, 3043 |
| BmcAI | AGTACT | 1 cut(s) | 552 |
| Bme1390I | CCNGG | 7 cut(s) | 896, 1377, 1424, 1503, 1778, 2533, 2562 |
| Bme18I | GGWCC | 4 cut(s) | 775, 892, 2114, 3101 |
| BmeT110I | CYCGRG | 1 cut(s) | 1577 |
| BmgBI | CACGTC | 1 cut(s) | 1420 |
| BmgT120I | GGNCC | 6 cut(s) | 775, 892, 1339, 2114, 2911, 3101 |
| BmiI | GGNNCC | 2 cut(s) | 706, 3189 |
| BmrFI | CCNGG | 7 cut(s) | 896, 1377, 1424, 1503, 1778, 2533, 2562 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2001 |
| BpiI | GAAGAC | 5 cut(s) | 1004, 1413, 2001, 2066, 3272 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 283, 315 |
| Bpu10I | CCTNAGC | 2 cut(s) | 960, 3138 |
| Bpu14I | TTCGAA | 1 cut(s) | 2711 |
| BpuEI | CTTGAG | 4 cut(s) | 164, 1292, 2000, 3075 |
| BpuMI | CCSGG | 1 cut(s) | 1778 |
| BsaAI | YACGTR | 2 cut(s) | 1469, 1601 |
| BsaBI | GATNNNNATC | 1 cut(s) | 765 |
| BsaI | GGTCTC | 1 cut(s) | 1580 |
| BsaJI | CCNNGG | 3 cut(s) | 1776, 2532, 2914 |
| BsaWI | WCCGGW | 4 cut(s) | 40, 2278, 2575, 2704 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1064, 1094 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 2069, 2398, 2920, 3071, 3110 |
| Bse118I | RCCGGY | 1 cut(s) | 2704 |
| Bse1I | ACTGG | 5 cut(s) | 223, 778, 1233, 2457, 2695 |
| Bse21I | CCTNAGG | 1 cut(s) | 1907 |
| Bse3DI | GCAATG | 2 cut(s) | 1179, 1490 |
| Bse8I | GATNNNNATC | 1 cut(s) | 765 |
| BseAI | TCCGGA | 2 cut(s) | 40, 2575 |
| BseBI | CCWGG | 6 cut(s) | 896, 1377, 1424, 1503, 2533, 2562 |
| BseDI | CCNNGG | 3 cut(s) | 1776, 2532, 2914 |
| BseJI | GATNNNNATC | 1 cut(s) | 765 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 2069, 2398, 2920, 3071, 3110 |
| BseMI | GCAATG | 2 cut(s) | 1179, 1490 |
| BseMII | CTCAG | 9 cut(s) | 251, 879, 951, 1342, 1762, 2039, 2302, 2525, 3152 |
| BseNI | ACTGG | 5 cut(s) | 223, 778, 1233, 2457, 2695 |
| BseRI | GAGGAG | 2 cut(s) | 3072, 3185 |
| BseXI | GCAGC | 4 cut(s) | 283, 1234, 2121, 3053 |
| BseYI | CCCAGC | 1 cut(s) | 667 |
| BsgI | GTGCAG | 1 cut(s) | 2883 |
| Bsh1236I | CGCG | 1 cut(s) | 2182 |
| BshFI | GGCC | 3 cut(s) | 1341, 2913, 3075 |
| BshTI | ACCGGT | 1 cut(s) | 2704 |
| BsiHKAI | GWGCWC | 2 cut(s) | 18, 363 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1577 |
| BsiSI | CCGG | 5 cut(s) | 41, 1778, 2279, 2576, 2705 |
| BslFI | GGGAC | 2 cut(s) | 602, 2549 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 2069, 2398, 2920, 3071, 3110 |
| BsmAI | GTCTC | 6 cut(s) | 202, 250, 671, 1580, 2367, 3231 |
| BsmBI | CGTCTC | 2 cut(s) | 202, 2367 |
| BsmFI | GGGAC | 2 cut(s) | 602, 2549 |
| BsmI | GAATGC | 4 cut(s) | 1111, 1305, 2393, 2474 |
| BsnI | GGCC | 3 cut(s) | 1341, 2913, 3075 |
| Bso31I | GGTCTC | 1 cut(s) | 1580 |
| BsoBI | CYCGRG | 1 cut(s) | 1577 |
| Bsp119I | TTCGAA | 1 cut(s) | 2711 |
| Bsp1286I | GDGCHC | 3 cut(s) | 18, 363, 3192 |
| Bsp13I | TCCGGA | 2 cut(s) | 40, 2575 |
| Bsp1407I | TGTACA | 2 cut(s) | 2108, 2462 |
| BspACI | CCGC | 4 cut(s) | 701, 2692, 2792, 3099 |
| BspANI | GGCC | 3 cut(s) | 1341, 2913, 3075 |
| BspCNI | CTCAG | 9 cut(s) | 252, 880, 952, 1341, 1761, 2040, 2301, 2524, 3151 |
| BspEI | TCCGGA | 2 cut(s) | 40, 2575 |
| BspFNI | CGCG | 1 cut(s) | 2182 |
| BspHI | TCATGA | 1 cut(s) | 3278 |
| BspLI | GGNNCC | 2 cut(s) | 706, 3189 |
| BspMI | ACCTGC | 1 cut(s) | 1072 |
| BspPI | GGATC | 3 cut(s) | 188, 642, 1367 |
| BspQI | GCTCTTC | 3 cut(s) | 924, 2016, 3249 |
| BspT104I | TTCGAA | 1 cut(s) | 2711 |
| BspTI | CTTAAG | 1 cut(s) | 2519 |
| BspTNI | GGTCTC | 1 cut(s) | 1580 |
| BsrDI | GCAATG | 2 cut(s) | 1179, 1490 |
| BsrFI | RCCGGY | 1 cut(s) | 2704 |
| BsrGI | TGTACA | 2 cut(s) | 2108, 2462 |
| BsrI | ACTGG | 5 cut(s) | 223, 778, 1233, 2457, 2695 |
| BssAI | RCCGGY | 1 cut(s) | 2704 |
| BssECI | CCNNGG | 3 cut(s) | 1776, 2532, 2914 |
| BssNAI | GTATAC | 1 cut(s) | 1829 |
| BssSI | CACGAG | 1 cut(s) | 2364 |
| BssT1I | CCWWGG | 1 cut(s) | 2914 |
| Bst1107I | GTATAC | 1 cut(s) | 1829 |
| Bst2BI | CACGAG | 1 cut(s) | 2364 |
| Bst2UI | CCWGG | 6 cut(s) | 896, 1377, 1424, 1503, 2533, 2562 |
| Bst4CI | ACNGT | 6 cut(s) | 11, 788, 974, 1216, 2544, 2596 |
| Bst6I | CTCTTC | 6 cut(s) | 246, 924, 1157, 1271, 2016, 3249 |
| BstAFI | CTTAAG | 1 cut(s) | 2519 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1324 |
| BstAUI | TGTACA | 2 cut(s) | 2108, 2462 |
| BstBAI | YACGTR | 2 cut(s) | 1469, 1601 |
| BstBI | TTCGAA | 1 cut(s) | 2711 |
| BstC8I | GCNNGC | 3 cut(s) | 939, 1303, 1382 |
| BstEII | GGTNACC | 2 cut(s) | 953, 2258 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3108 |
| BstFNI | CGCG | 1 cut(s) | 2182 |
| BstHHI | GCGC | 2 cut(s) | 2184, 2662 |
| BstMAI | GTCTC | 6 cut(s) | 202, 250, 671, 1580, 2367, 3231 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 110, 1324 |
| BstNI | CCWGG | 6 cut(s) | 896, 1377, 1424, 1503, 2533, 2562 |
| BstNSI | RCATGY | 1 cut(s) | 1239 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2001 |
| BstPI | GGTNACC | 2 cut(s) | 953, 2258 |
| BstSCI | CCNGG | 7 cut(s) | 894, 1375, 1422, 1501, 1776, 2531, 2560 |
| BstSFI | CTRYAG | 2 cut(s) | 343, 1293 |
| BstSNI | TACGTA | 1 cut(s) | 1601 |
| BstUI | CGCG | 1 cut(s) | 2182 |
| BstV1I | GCAGC | 4 cut(s) | 283, 1234, 2121, 3053 |
| BstV2I | GAAGAC | 5 cut(s) | 1004, 1413, 2001, 2066, 3272 |
| BstX2I | RGATCY | 3 cut(s) | 884, 1280, 1798 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2795 |
| BstYI | RGATCY | 3 cut(s) | 884, 1280, 1798 |
| BstZ17I | GTATAC | 1 cut(s) | 1829 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1907 |
| BsuRI | GGCC | 3 cut(s) | 1341, 2913, 3075 |
| BtrI | CACGTC | 1 cut(s) | 1420 |
| BtsI | GCAGTG | 2 cut(s) | 51, 1930 |
| BtsIMutI | CAGTG | 5 cut(s) | 51, 1538, 1792, 1930, 1943 |
| BveI | ACCTGC | 1 cut(s) | 1072 |
| Cac8I | GCNNGC | 3 cut(s) | 939, 1303, 1382 |
| CciI | TCATGA | 1 cut(s) | 3278 |
| CfoI | GCGC | 2 cut(s) | 2184, 2662 |
| Cfr10I | RCCGGY | 1 cut(s) | 2704 |
| Cfr13I | GGNCC | 6 cut(s) | 775, 892, 1339, 2114, 2911, 3101 |
| CseI | GACGC | 1 cut(s) | 1241 |
| CspAI | ACCGGT | 1 cut(s) | 2704 |
| DraI | TTTAAA | 2 cut(s) | 1761, 2238 |
| Eam1104I | CTCTTC | 6 cut(s) | 246, 924, 1157, 1271, 2016, 3249 |
| EarI | CTCTTC | 6 cut(s) | 246, 924, 1157, 1271, 2016, 3249 |
| EciI | GGCGGA | 1 cut(s) | 3114 |
| Ecl136II | GAGCTC | 2 cut(s) | 16, 361 |
| Eco105I | TACGTA | 1 cut(s) | 1601 |
| Eco130I | CCWWGG | 1 cut(s) | 2914 |
| Eco147I | AGGCCT | 1 cut(s) | 3075 |
| Eco24I | GRGCYC | 3 cut(s) | 18, 363, 3192 |
| Eco31I | GGTCTC | 1 cut(s) | 1580 |
| Eco32I | GATATC | 1 cut(s) | 2124 |
| Eco47I | GGWCC | 4 cut(s) | 775, 892, 2114, 3101 |
| Eco53kI | GAGCTC | 2 cut(s) | 16, 361 |
| Eco57I | CTGAAG | 7 cut(s) | 93, 402, 905, 928, 1768, 2060, 2483 |
| Eco81I | CCTNAGG | 1 cut(s) | 1907 |
| Eco88I | CYCGRG | 1 cut(s) | 1577 |
| Eco91I | GGTNACC | 2 cut(s) | 953, 2258 |
| EcoICRI | GAGCTC | 2 cut(s) | 16, 361 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3108 |
| EcoO65I | GGTNACC | 2 cut(s) | 953, 2258 |
| EcoRI | GAATTC | 1 cut(s) | 331 |
| EcoRII | CCWGG | 6 cut(s) | 894, 1375, 1422, 1501, 2531, 2560 |
| EcoRV | GATATC | 1 cut(s) | 2124 |
| EcoT14I | CCWWGG | 1 cut(s) | 2914 |
| EcoT22I | ATGCAT | 4 cut(s) | 106, 1224, 1320, 2069 |
| EcoT38I | GRGCYC | 3 cut(s) | 18, 363, 3192 |
| ErhI | CCWWGG | 1 cut(s) | 2914 |
| Esp3I | CGTCTC | 2 cut(s) | 202, 2367 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1154, 1186 |
| FaqI | GGGAC | 2 cut(s) | 602, 2549 |
| FauI | CCCGC | 1 cut(s) | 694 |
| FbaI | TGATCA | 1 cut(s) | 2587 |
| FblI | GTMKAC | 1 cut(s) | 1828 |
| Fnu4HI | GCNGC | 4 cut(s) | 297, 1248, 2135, 3042 |
| FriOI | GRGCYC | 3 cut(s) | 18, 363, 3192 |
| Fsp4HI | GCNGC | 4 cut(s) | 297, 1248, 2135, 3042 |
| GlaI | GCGC | 2 cut(s) | 2183, 2661 |
| GluI | GCNGC | 4 cut(s) | 297, 1248, 2135, 3042 |
| GsaI | CCCAGC | 1 cut(s) | 671 |
| HaeIII | GGCC | 3 cut(s) | 1341, 2913, 3075 |
| HapII | CCGG | 5 cut(s) | 41, 1778, 2279, 2576, 2705 |
| HgaI | GACGC | 1 cut(s) | 1241 |
| HhaI | GCGC | 2 cut(s) | 2184, 2662 |
| Hin6I | GCGC | 2 cut(s) | 2182, 2660 |
| HinP1I | GCGC | 2 cut(s) | 2182, 2660 |
| HincII | GTYRAC | 3 cut(s) | 537, 2294, 2977 |
| HindII | GTYRAC | 3 cut(s) | 537, 2294, 2977 |
| HindIII | AAGCTT | 2 cut(s) | 1976, 2354 |
| HpaI | GTTAAC | 1 cut(s) | 2977 |
| HpaII | CCGG | 5 cut(s) | 41, 1778, 2279, 2576, 2705 |
| HphI | GGTGA | 6 cut(s) | 232, 845, 889, 1553, 2293, 2807 |
| Hpy166II | GTNNAC | 8 cut(s) | 496, 537, 1829, 2153, 2294, 2369, 2463, 2977 |
| Hpy8I | GTNNAC | 8 cut(s) | 496, 537, 1829, 2153, 2294, 2369, 2463, 2977 |
| Hpy99I | CGWCG | 3 cut(s) | 86, 269, 2862 |
| HpyCH4III | ACNGT | 6 cut(s) | 11, 788, 974, 1216, 2544, 2596 |
| HpyCH4IV | ACGT | 7 cut(s) | 684, 730, 1419, 1468, 1600, 2944, 2988 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 110, 1324 |
| HpySE526I | ACGT | 7 cut(s) | 684, 730, 1419, 1468, 1600, 2944, 2988 |
| HspAI | GCGC | 2 cut(s) | 2182, 2660 |
| Kpn2I | TCCGGA | 2 cut(s) | 40, 2575 |
| Ksp22I | TGATCA | 1 cut(s) | 2587 |
| KspAI | GTTAAC | 1 cut(s) | 2977 |
| LguI | GCTCTTC | 3 cut(s) | 924, 2016, 3249 |
| LmnI | GCTCC | 6 cut(s) | 21, 358, 704, 2201, 2608, 3187 |
| Lsp1109I | GCAGC | 4 cut(s) | 283, 1234, 2121, 3053 |
| MaeII | ACGT | 7 cut(s) | 684, 730, 1419, 1468, 1600, 2944, 2988 |
| MaeIII | GTNAC | 9 cut(s) | 639, 953, 1238, 1596, 1751, 1986, 2258, 2269, 2596 |
| MfeI | CAATTG | 1 cut(s) | 57 |
| MflI | RGATCY | 3 cut(s) | 884, 1280, 1798 |
| MhlI | GDGCHC | 3 cut(s) | 18, 363, 3192 |
| MlyI | GAGTC | 1 cut(s) | 2885 |
| MmeI | TCCRAC | 3 cut(s) | 762, 1837, 3231 |
| Mph1103I | ATGCAT | 4 cut(s) | 106, 1224, 1320, 2069 |
| MroI | TCCGGA | 2 cut(s) | 40, 2575 |
| MroXI | GAANNNNTTC | 2 cut(s) | 918, 1350 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2483, 3208 |
| MspA1I | CMGCKG | 1 cut(s) | 1834 |
| MspCI | CTTAAG | 1 cut(s) | 2519 |
| MspI | CCGG | 5 cut(s) | 41, 1778, 2279, 2576, 2705 |
| MspR9I | CCNGG | 7 cut(s) | 896, 1377, 1424, 1503, 1778, 2533, 2562 |
| MunI | CAATTG | 1 cut(s) | 57 |
| Mva1269I | GAATGC | 4 cut(s) | 1111, 1305, 2393, 2474 |
| MvaI | CCWGG | 6 cut(s) | 896, 1377, 1424, 1503, 2533, 2562 |
| MvnI | CGCG | 1 cut(s) | 2182 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 110, 1324 |
| NciI | CCSGG | 1 cut(s) | 1778 |
| NlaIV | GGNNCC | 2 cut(s) | 706, 3189 |
| NmeAIII | GCCGAG | 1 cut(s) | 1382 |
| NmuCI | GTSAC | 3 cut(s) | 1238, 1751, 2596 |
| NsiI | ATGCAT | 4 cut(s) | 106, 1224, 1320, 2069 |
| NspI | RCATGY | 1 cut(s) | 1239 |
| NspV | TTCGAA | 1 cut(s) | 2711 |
| PaeR7I | CTCGAG | 1 cut(s) | 1577 |
| PagI | TCATGA | 1 cut(s) | 3278 |
| PceI | AGGCCT | 1 cut(s) | 3075 |
| PciSI | GCTCTTC | 3 cut(s) | 924, 2016, 3249 |
| PctI | GAATGC | 4 cut(s) | 1111, 1305, 2393, 2474 |
| PdmI | GAANNNNTTC | 2 cut(s) | 918, 1350 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2920 |
| PfoI | TCCNGGA | 2 cut(s) | 1422, 2560 |
| PinAI | ACCGGT | 1 cut(s) | 2704 |
| PkrI | GCNGC | 4 cut(s) | 298, 1249, 2136, 3043 |
| PleI | GAGTC | 1 cut(s) | 2884 |
| PpsI | GAGTC | 1 cut(s) | 2884 |
| Ppu21I | YACGTR | 2 cut(s) | 1469, 1601 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2001 |
| PsiI | TTATAA | 1 cut(s) | 3129 |
| Psp124BI | GAGCTC | 2 cut(s) | 18, 363 |
| Psp1406I | AACGTT | 1 cut(s) | 2988 |
| Psp6I | CCWGG | 6 cut(s) | 894, 1375, 1422, 1501, 2531, 2560 |
| PspEI | GGTNACC | 2 cut(s) | 953, 2258 |
| PspFI | CCCAGC | 1 cut(s) | 667 |
| PspGI | CCWGG | 6 cut(s) | 894, 1375, 1422, 1501, 2531, 2560 |
| PspN4I | GGNNCC | 2 cut(s) | 706, 3189 |
| PspPI | GGNCC | 6 cut(s) | 775, 892, 1339, 2114, 2911, 3101 |
| PsuI | RGATCY | 3 cut(s) | 884, 1280, 1798 |
| PvuII | CAGCTG | 1 cut(s) | 1834 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2483, 3208 |
| SacI | GAGCTC | 2 cut(s) | 18, 363 |
| SapI | GCTCTTC | 3 cut(s) | 924, 2016, 3249 |
| SatI | GCNGC | 4 cut(s) | 297, 1248, 2135, 3042 |
| Sau96I | GGNCC | 6 cut(s) | 775, 892, 1339, 2114, 2911, 3101 |
| ScaI | AGTACT | 1 cut(s) | 552 |
| SchI | GAGTC | 1 cut(s) | 2885 |
| ScrFI | CCNGG | 7 cut(s) | 896, 1377, 1424, 1503, 1778, 2533, 2562 |
| SduI | GDGCHC | 3 cut(s) | 18, 363, 3192 |
| SfcI | CTRYAG | 2 cut(s) | 343, 1293 |
| Sfr274I | CTCGAG | 1 cut(s) | 1577 |
| SfuI | TTCGAA | 1 cut(s) | 2711 |
| SinI | GGWCC | 4 cut(s) | 775, 892, 2114, 3101 |
| SlaI | CTCGAG | 1 cut(s) | 1577 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2483, 3208 |
| SmlI | CTYRAG | 6 cut(s) | 143, 1271, 1577, 1979, 2519, 3090 |
| SmoI | CTYRAG | 6 cut(s) | 143, 1271, 1577, 1979, 2519, 3090 |
| SnaBI | TACGTA | 1 cut(s) | 1601 |
| SpeI | ACTAGT | 1 cut(s) | 2371 |
| SseBI | AGGCCT | 1 cut(s) | 3075 |
| SsiI | CCGC | 4 cut(s) | 701, 2692, 2792, 3099 |
| SspI | AATATT | 4 cut(s) | 73, 180, 1808, 2091 |
| SstI | GAGCTC | 2 cut(s) | 18, 363 |
| StuI | AGGCCT | 1 cut(s) | 3075 |
| StyD4I | CCNGG | 7 cut(s) | 894, 1375, 1422, 1501, 1776, 2531, 2560 |
| StyI | CCWWGG | 1 cut(s) | 2914 |
| TaaI | ACNGT | 6 cut(s) | 11, 788, 974, 1216, 2544, 2596 |
| TaiI | ACGT | 7 cut(s) | 687, 733, 1422, 1471, 1603, 2947, 2991 |
| TaqI | TCGA | 9 cut(s) | 192, 562, 1435, 1578, 1973, 2038, 2711, 2784, 2879 |
| TaqII | GACCGA | 1 cut(s) | 1991 |
| TatI | WGTACW | 6 cut(s) | 550, 1267, 2108, 2368, 2462, 2680 |
| TscAI | CASTG | 5 cut(s) | 58, 1545, 1792, 1930, 1950 |
| TseFI | GTSAC | 3 cut(s) | 1238, 1751, 2596 |
| TseI | GCWGC | 4 cut(s) | 296, 1247, 2134, 3041 |
| Tsp45I | GTSAC | 3 cut(s) | 1238, 1751, 2596 |
| TspGWI | ACGGA | 3 cut(s) | 625, 1843, 2349 |
| TspRI | CASTG | 5 cut(s) | 58, 1545, 1792, 1930, 1950 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2920 |
| Vha464I | CTTAAG | 1 cut(s) | 2519 |
| VpaK11BI | GGWCC | 4 cut(s) | 775, 892, 2114, 3101 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3108 |
| XbaI | TCTAGA | 1 cut(s) | 1147 |
| XceI | RCATGY | 1 cut(s) | 1239 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2817 |
| XhoI | CTCGAG | 1 cut(s) | 1577 |
| XmiI | GTMKAC | 1 cut(s) | 1828 |
| XmnI | GAANNNNTTC | 2 cut(s) | 918, 1350 |
| ZrmI | AGTACT | 1 cut(s) | 552 |
| Zsp2I | ATGCAT | 4 cut(s) | 106, 1224, 1320, 2069 |