TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| LRR_14 | PF23598 | 46 - 132 | 3.4e-12 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 51 - 252 | 1.2e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 156 - 227 | 5.1e-11 | Leucine-rich repeat region |
| C-JID | PF20160 | 303 - 345 | 6.6e-15 | C-JID domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 651 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 949 |
| AccBSI | CCGCTC | 1 cut(s) | 1045 |
| AccI | GTMKAC | 1 cut(s) | 613 |
| AciI | CCGC | 2 cut(s) | 1043, 1049 |
| AclWI | GGATC | 1 cut(s) | 424 |
| AcoI | YGGCCR | 2 cut(s) | 631, 750 |
| AcsI | RAATTY | 4 cut(s) | 380, 759, 893, 921 |
| AfaI | GTAC | 1 cut(s) | 935 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 949 |
| AflII | CTTAAG | 1 cut(s) | 863 |
| AgsI | TTSAA | 8 cut(s) | 22, 107, 146, 155, 178, 367, 520, 764 |
| AjnI | CCWGG | 3 cut(s) | 910, 979, 1013 |
| AluBI | AGCT | 5 cut(s) | 265, 313, 697, 825, 973 |
| AluI | AGCT | 5 cut(s) | 265, 313, 697, 825, 973 |
| AlwI | GGATC | 1 cut(s) | 424 |
| Ama87I | CYCGRG | 2 cut(s) | 89, 620 |
| AoxI | GGCC | 2 cut(s) | 631, 750 |
| ApeKI | GCWGC | 1 cut(s) | 4 |
| ApoI | RAATTY | 4 cut(s) | 380, 759, 893, 921 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 442, 474 |
| AseI | ATTAAT | 1 cut(s) | 30 |
| AsuHPI | GGTGA | 2 cut(s) | 402, 932 |
| AvaI | CYCGRG | 2 cut(s) | 89, 620 |
| BalI | TGGCCA | 1 cut(s) | 752 |
| BbsI | GAAGAC | 3 cut(s) | 564, 647, 948 |
| BbvI | GCAGC | 1 cut(s) | 16 |
| BccI | CCATC | 2 cut(s) | 709, 997 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 459, 493 |
| BciT130I | CCWGG | 3 cut(s) | 912, 981, 1015 |
| BfaI | CTAG | 1 cut(s) | 642 |
| BfrI | CTTAAG | 1 cut(s) | 863 |
| BglII | AGATCT | 1 cut(s) | 238 |
| BisI | GCNGC | 1 cut(s) | 5 |
| BlsI | GCNGC | 1 cut(s) | 6 |
| Bme1390I | CCNGG | 3 cut(s) | 912, 981, 1015 |
| BmeT110I | CYCGRG | 2 cut(s) | 89, 620 |
| BmrFI | CCNGG | 3 cut(s) | 912, 981, 1015 |
| BmrI | ACTGGG | 1 cut(s) | 546 |
| BmsI | GCATC | 4 cut(s) | 554, 636, 765, 848 |
| BmuI | ACTGGG | 1 cut(s) | 546 |
| BpiI | GAAGAC | 3 cut(s) | 564, 647, 948 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 28, 60 |
| BsaBI | GATNNNNATC | 1 cut(s) | 243 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 949 |
| Bse1I | ACTGG | 2 cut(s) | 552, 813 |
| Bse3DI | GCAATG | 1 cut(s) | 672 |
| Bse8I | GATNNNNATC | 1 cut(s) | 243 |
| BseBI | CCWGG | 3 cut(s) | 912, 981, 1015 |
| BseGI | GGATG | 5 cut(s) | 286, 569, 791, 976, 1008 |
| BseJI | GATNNNNATC | 1 cut(s) | 243 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 949 |
| BseMI | GCAATG | 1 cut(s) | 672 |
| BseMII | CTCAG | 2 cut(s) | 26, 607 |
| BseNI | ACTGG | 2 cut(s) | 552, 813 |
| BseRI | GAGGAG | 3 cut(s) | 340, 795, 1025 |
| BseXI | GCAGC | 1 cut(s) | 16 |
| BseYI | CCCAGC | 1 cut(s) | 392 |
| BshFI | GGCC | 2 cut(s) | 633, 752 |
| BsiHKCI | CYCGRG | 2 cut(s) | 89, 620 |
| BsiSI | CCGG | 1 cut(s) | 278 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 949 |
| BsmI | GAATGC | 1 cut(s) | 502 |
| BsnI | GGCC | 2 cut(s) | 633, 752 |
| BsoBI | CYCGRG | 2 cut(s) | 89, 620 |
| Bsp143I | GATC | 3 cut(s) | 238, 429, 581 |
| BspACI | CCGC | 2 cut(s) | 1043, 1049 |
| BspANI | GGCC | 2 cut(s) | 633, 752 |
| BspCNI | CTCAG | 2 cut(s) | 27, 606 |
| BspPI | GGATC | 1 cut(s) | 424 |
| BspTI | CTTAAG | 1 cut(s) | 863 |
| BsrBI | CCGCTC | 1 cut(s) | 1045 |
| BsrDI | GCAATG | 1 cut(s) | 672 |
| BsrI | ACTGG | 2 cut(s) | 552, 813 |
| BssMI | GATC | 3 cut(s) | 238, 429, 581 |
| Bst2UI | CCWGG | 3 cut(s) | 912, 981, 1015 |
| Bst4CI | ACNGT | 5 cut(s) | 166, 408, 653, 800, 967 |
| BstAFI | CTTAAG | 1 cut(s) | 863 |
| BstDEI | CTNAG | 3 cut(s) | 35, 524, 593 |
| BstEII | GGTNACC | 1 cut(s) | 408 |
| BstF5I | GGATG | 5 cut(s) | 286, 569, 791, 976, 1008 |
| BstKTI | GATC | 3 cut(s) | 241, 432, 584 |
| BstMBI | GATC | 3 cut(s) | 238, 429, 581 |
| BstNI | CCWGG | 3 cut(s) | 912, 981, 1015 |
| BstPI | GGTNACC | 1 cut(s) | 408 |
| BstSCI | CCNGG | 3 cut(s) | 910, 979, 1013 |
| BstV1I | GCAGC | 1 cut(s) | 16 |
| BstV2I | GAAGAC | 3 cut(s) | 564, 647, 948 |
| BstX2I | RGATCY | 1 cut(s) | 238 |
| BstYI | RGATCY | 1 cut(s) | 238 |
| BsuRI | GGCC | 2 cut(s) | 633, 752 |
| BtsCI | GGATG | 5 cut(s) | 286, 569, 791, 976, 1008 |
| BtsI | GCAGTG | 1 cut(s) | 217 |
| BtsIMutI | CAGTG | 2 cut(s) | 217, 559 |
| Csp6I | GTAC | 1 cut(s) | 934 |
| CviAII | CATG | 2 cut(s) | 293, 420 |
| CviQI | GTAC | 1 cut(s) | 934 |
| DdeI | CTNAG | 3 cut(s) | 35, 524, 593 |
| DpnI | GATC | 3 cut(s) | 240, 431, 583 |
| DpnII | GATC | 3 cut(s) | 238, 429, 581 |
| DraI | TTTAAA | 1 cut(s) | 73 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 651 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 651 |
| EaeI | YGGCCR | 2 cut(s) | 631, 750 |
| Eco88I | CYCGRG | 2 cut(s) | 89, 620 |
| Eco91I | GGTNACC | 1 cut(s) | 408 |
| EcoO65I | GGTNACC | 1 cut(s) | 408 |
| EcoRII | CCWGG | 3 cut(s) | 910, 979, 1013 |
| FaeI | CATG | 2 cut(s) | 296, 423 |
| FatI | CATG | 2 cut(s) | 292, 419 |
| FauI | CCCGC | 1 cut(s) | 1056 |
| FblI | GTMKAC | 1 cut(s) | 613 |
| Fnu4HI | GCNGC | 1 cut(s) | 5 |
| FokI | GGATG | 5 cut(s) | 293, 576, 798, 963, 1015 |
| Fsp4HI | GCNGC | 1 cut(s) | 5 |
| FspBI | CTAG | 1 cut(s) | 642 |
| GluI | GCNGC | 1 cut(s) | 5 |
| GsaI | CCCAGC | 1 cut(s) | 396 |
| HaeIII | GGCC | 2 cut(s) | 633, 752 |
| HapII | CCGG | 1 cut(s) | 278 |
| Hin1II | CATG | 2 cut(s) | 296, 423 |
| HincII | GTYRAC | 3 cut(s) | 58, 133, 796 |
| HindII | GTYRAC | 3 cut(s) | 58, 133, 796 |
| HindIII | AAGCTT | 2 cut(s) | 263, 311 |
| HinfI | GANTC | 7 cut(s) | 37, 49, 190, 520, 868, 1008, 1032 |
| HpaI | GTTAAC | 1 cut(s) | 796 |
| HpaII | CCGG | 1 cut(s) | 278 |
| HphI | GGTGA | 2 cut(s) | 402, 932 |
| Hpy166II | GTNNAC | 5 cut(s) | 58, 133, 614, 718, 796 |
| Hpy188I | TCNGA | 5 cut(s) | 36, 48, 544, 684, 883 |
| Hpy188III | TCNNGA | 4 cut(s) | 89, 104, 642, 926 |
| Hpy8I | GTNNAC | 5 cut(s) | 58, 133, 614, 718, 796 |
| HpyAV | CCTTC | 1 cut(s) | 101 |
| HpyCH4III | ACNGT | 5 cut(s) | 166, 408, 653, 800, 967 |
| HpyCH4IV | ACGT | 1 cut(s) | 746 |
| HpyCH4V | TGCA | 6 cut(s) | 4, 186, 502, 534, 732, 768 |
| HpyF3I | CTNAG | 3 cut(s) | 35, 524, 593 |
| HpySE526I | ACGT | 1 cut(s) | 746 |
| Hsp92II | CATG | 2 cut(s) | 296, 423 |
| KspAI | GTTAAC | 1 cut(s) | 796 |
| Kzo9I | GATC | 3 cut(s) | 238, 429, 581 |
| LmnI | GCTCC | 1 cut(s) | 1050 |
| Lsp1109I | GCAGC | 1 cut(s) | 16 |
| LweI | GCATC | 4 cut(s) | 554, 636, 765, 848 |
| MaeI | CTAG | 1 cut(s) | 642 |
| MaeII | ACGT | 1 cut(s) | 746 |
| MaeIII | GTNAC | 5 cut(s) | 38, 408, 458, 527, 992 |
| MalI | GATC | 3 cut(s) | 240, 431, 583 |
| MbiI | CCGCTC | 1 cut(s) | 1045 |
| MboI | GATC | 3 cut(s) | 238, 429, 581 |
| MboII | GAAGA | 3 cut(s) | 564, 647, 948 |
| MfeI | CAATTG | 2 cut(s) | 141, 515 |
| MflI | RGATCY | 1 cut(s) | 238 |
| MlsI | TGGCCA | 1 cut(s) | 752 |
| MluCI | AATT | 9 cut(s) | 141, 380, 515, 545, 605, 759, 769, 893, 921 |
| MluNI | TGGCCA | 1 cut(s) | 752 |
| MlyI | GAGTC | 3 cut(s) | 46, 877, 1026 |
| MnlI | CCTC | 7 cut(s) | 121, 358, 361, 383, 773, 776, 1046 |
| Mox20I | TGGCCA | 1 cut(s) | 752 |
| MscI | TGGCCA | 1 cut(s) | 752 |
| MseI | TTAA | 8 cut(s) | 30, 72, 224, 509, 578, 587, 795, 864 |
| MslI | CAYNNNNRTG | 2 cut(s) | 809, 945 |
| Msp20I | TGGCCA | 1 cut(s) | 752 |
| MspCI | CTTAAG | 1 cut(s) | 863 |
| MspI | CCGG | 1 cut(s) | 278 |
| MspR9I | CCNGG | 3 cut(s) | 912, 981, 1015 |
| MunI | CAATTG | 2 cut(s) | 141, 515 |
| Mva1269I | GAATGC | 1 cut(s) | 502 |
| MvaI | CCWGG | 3 cut(s) | 912, 981, 1015 |
| NdeII | GATC | 3 cut(s) | 238, 429, 581 |
| NlaIII | CATG | 2 cut(s) | 296, 423 |
| NmuCI | GTSAC | 4 cut(s) | 38, 408, 458, 527 |
| PaeR7I | CTCGAG | 1 cut(s) | 89 |
| PctI | GAATGC | 1 cut(s) | 502 |
| PfeI | GAWTC | 4 cut(s) | 49, 190, 520, 1008 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 949 |
| PfoI | TCCNGGA | 1 cut(s) | 910 |
| PkrI | GCNGC | 1 cut(s) | 6 |
| PleI | GAGTC | 3 cut(s) | 45, 876, 1026 |
| PpsI | GAGTC | 3 cut(s) | 45, 876, 1026 |
| PshBI | ATTAAT | 1 cut(s) | 30 |
| Psp6I | CCWGG | 3 cut(s) | 910, 979, 1013 |
| PspEI | GGTNACC | 1 cut(s) | 408 |
| PspFI | CCCAGC | 1 cut(s) | 392 |
| PspGI | CCWGG | 3 cut(s) | 910, 979, 1013 |
| PsuI | RGATCY | 1 cut(s) | 238 |
| RsaI | GTAC | 1 cut(s) | 935 |
| RsaNI | GTAC | 1 cut(s) | 934 |
| RseI | CAYNNNNRTG | 2 cut(s) | 809, 945 |
| SaqAI | TTAA | 8 cut(s) | 30, 72, 224, 509, 578, 587, 795, 864 |
| SatI | GCNGC | 1 cut(s) | 5 |
| Sau3AI | GATC | 3 cut(s) | 238, 429, 581 |
| SchI | GAGTC | 3 cut(s) | 46, 877, 1026 |
| ScrFI | CCNGG | 3 cut(s) | 912, 981, 1015 |
| SfaNI | GCATC | 4 cut(s) | 554, 636, 765, 848 |
| Sfr274I | CTCGAG | 1 cut(s) | 89 |
| SlaI | CTCGAG | 1 cut(s) | 89 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 809, 945 |
| SmlI | CTYRAG | 2 cut(s) | 89, 863 |
| SmoI | CTYRAG | 2 cut(s) | 89, 863 |
| Sse9I | AATT | 9 cut(s) | 141, 380, 515, 545, 605, 759, 769, 893, 921 |
| SsiI | CCGC | 2 cut(s) | 1043, 1049 |
| SspMI | CTAG | 1 cut(s) | 642 |
| StyD4I | CCNGG | 3 cut(s) | 910, 979, 1013 |
| TaaI | ACNGT | 5 cut(s) | 166, 408, 653, 800, 967 |
| TaiI | ACGT | 1 cut(s) | 749 |
| TaqI | TCGA | 4 cut(s) | 90, 773, 871, 959 |
| TasI | AATT | 9 cut(s) | 141, 380, 515, 545, 605, 759, 769, 893, 921 |
| TfiI | GAWTC | 4 cut(s) | 49, 190, 520, 1008 |
| Tru1I | TTAA | 8 cut(s) | 30, 72, 224, 509, 578, 587, 795, 864 |
| Tru9I | TTAA | 8 cut(s) | 30, 72, 224, 509, 578, 587, 795, 864 |
| TscAI | CASTG | 2 cut(s) | 217, 559 |
| TseFI | GTSAC | 4 cut(s) | 38, 408, 458, 527 |
| TseI | GCWGC | 1 cut(s) | 4 |
| Tsp45I | GTSAC | 4 cut(s) | 38, 408, 458, 527 |
| TspDTI | ATGAA | 6 cut(s) | 495, 564, 726, 793, 834, 933 |
| TspRI | CASTG | 2 cut(s) | 217, 559 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 949 |
| Vha464I | CTTAAG | 1 cut(s) | 863 |
| VspI | ATTAAT | 1 cut(s) | 30 |
| XapI | RAATTY | 4 cut(s) | 380, 759, 893, 921 |
| XbaI | TCTAGA | 1 cut(s) | 641 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 708, 893 |
| XhoI | CTCGAG | 1 cut(s) | 89 |
| XmiI | GTMKAC | 1 cut(s) | 613 |
| XspI | CTAG | 1 cut(s) | 642 |