TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 125 - 229 | 9.5e-19 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 378 |
| AcsI | RAATTY | 2 cut(s) | 65, 664 |
| AcuI | CTGAAG | 1 cut(s) | 648 |
| AgsI | TTSAA | 4 cut(s) | 133, 530, 569, 664 |
| AhlI | ACTAGT | 1 cut(s) | 496 |
| AjnI | CCWGG | 1 cut(s) | 51 |
| AluBI | AGCT | 4 cut(s) | 264, 346, 505, 632 |
| AluI | AGCT | 4 cut(s) | 264, 346, 505, 632 |
| Alw26I | GTCTC | 1 cut(s) | 487 |
| AoxI | GGCC | 1 cut(s) | 333 |
| ApeKI | GCWGC | 2 cut(s) | 226, 505 |
| ApoI | RAATTY | 2 cut(s) | 65, 664 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 252 |
| AspS9I | GGNCC | 1 cut(s) | 333 |
| AsuHPI | GGTGA | 1 cut(s) | 16 |
| BauI | CACGAG | 1 cut(s) | 104 |
| BbsI | GAAGAC | 1 cut(s) | 179 |
| BbvI | GCAGC | 2 cut(s) | 238, 492 |
| BccI | CCATC | 2 cut(s) | 297, 618 |
| BciT130I | CCWGG | 1 cut(s) | 53 |
| BclI | TGATCA | 1 cut(s) | 307 |
| BcoDI | GTCTC | 1 cut(s) | 487 |
| BcuI | ACTAGT | 1 cut(s) | 496 |
| BfaI | CTAG | 3 cut(s) | 261, 497, 638 |
| BisI | GCNGC | 2 cut(s) | 227, 506 |
| BlsI | GCNGC | 2 cut(s) | 228, 507 |
| Bme1390I | CCNGG | 1 cut(s) | 53 |
| BmgT120I | GGNCC | 1 cut(s) | 333 |
| BmiI | GGNNCC | 1 cut(s) | 334 |
| BmrFI | CCNGG | 1 cut(s) | 53 |
| BmsI | GCATC | 1 cut(s) | 424 |
| BpiI | GAAGAC | 1 cut(s) | 179 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 421, 453 |
| BpuEI | CTTGAG | 1 cut(s) | 423 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 69, 99 |
| Bse1I | ACTGG | 1 cut(s) | 336 |
| Bse3DI | GCAATG | 2 cut(s) | 144, 717 |
| BseBI | CCWGG | 1 cut(s) | 53 |
| BseMI | GCAATG | 2 cut(s) | 144, 717 |
| BseNI | ACTGG | 1 cut(s) | 336 |
| BseRI | GAGGAG | 2 cut(s) | 142, 296 |
| BseXI | GCAGC | 2 cut(s) | 238, 492 |
| BshFI | GGCC | 1 cut(s) | 335 |
| BslFI | GGGAC | 1 cut(s) | 300 |
| BsmAI | GTCTC | 1 cut(s) | 487 |
| BsmFI | GGGAC | 1 cut(s) | 300 |
| BsmI | GAATGC | 2 cut(s) | 39, 525 |
| BsnI | GGCC | 1 cut(s) | 335 |
| Bsp143I | GATC | 3 cut(s) | 6, 307, 703 |
| BspANI | GGCC | 1 cut(s) | 335 |
| BspHI | TCATGA | 1 cut(s) | 613 |
| BspLI | GGNNCC | 1 cut(s) | 334 |
| BsrDI | GCAATG | 2 cut(s) | 144, 717 |
| BsrI | ACTGG | 1 cut(s) | 336 |
| BssMI | GATC | 3 cut(s) | 6, 307, 703 |
| BssSI | CACGAG | 1 cut(s) | 104 |
| Bst2BI | CACGAG | 1 cut(s) | 104 |
| Bst2UI | CCWGG | 1 cut(s) | 53 |
| Bst4CI | ACNGT | 3 cut(s) | 383, 447, 685 |
| BstC8I | GCNNGC | 2 cut(s) | 348, 510 |
| BstDEI | CTNAG | 1 cut(s) | 396 |
| BstKTI | GATC | 3 cut(s) | 9, 310, 706 |
| BstMAI | GTCTC | 1 cut(s) | 487 |
| BstMBI | GATC | 3 cut(s) | 6, 307, 703 |
| BstNI | CCWGG | 1 cut(s) | 53 |
| BstNSI | RCATGY | 1 cut(s) | 86 |
| BstSCI | CCNGG | 1 cut(s) | 51 |
| BstV1I | GCAGC | 2 cut(s) | 238, 492 |
| BstV2I | GAAGAC | 1 cut(s) | 179 |
| BsuRI | GGCC | 1 cut(s) | 335 |
| Cac8I | GCNNGC | 2 cut(s) | 348, 510 |
| CciI | TCATGA | 1 cut(s) | 613 |
| Cfr13I | GGNCC | 1 cut(s) | 333 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 391, 426, 480, 515 |
| CviAII | CATG | 5 cut(s) | 83, 521, 614, 694, 707 |
| CviJI | RGCY | 9 cut(s) | 128, 264, 335, 346, 350, 505, 512, 626, 632 |
| CviKI_1 | RGCY | 9 cut(s) | 128, 264, 335, 346, 350, 505, 512, 626, 632 |
| DdeI | CTNAG | 1 cut(s) | 396 |
| DpnI | GATC | 3 cut(s) | 8, 309, 705 |
| DpnII | GATC | 3 cut(s) | 6, 307, 703 |
| DraI | TTTAAA | 1 cut(s) | 546 |
| Eco32I | GATATC | 1 cut(s) | 649 |
| Eco57I | CTGAAG | 1 cut(s) | 648 |
| EcoRI | GAATTC | 1 cut(s) | 664 |
| EcoRII | CCWGG | 1 cut(s) | 51 |
| EcoRV | GATATC | 1 cut(s) | 649 |
| FaeI | CATG | 5 cut(s) | 86, 524, 617, 697, 710 |
| FaqI | GGGAC | 1 cut(s) | 300 |
| FatI | CATG | 5 cut(s) | 82, 520, 613, 693, 706 |
| FbaI | TGATCA | 1 cut(s) | 307 |
| FblI | GTMKAC | 1 cut(s) | 378 |
| Fnu4HI | GCNGC | 2 cut(s) | 227, 506 |
| Fsp4HI | GCNGC | 2 cut(s) | 227, 506 |
| FspBI | CTAG | 3 cut(s) | 261, 497, 638 |
| GluI | GCNGC | 2 cut(s) | 227, 506 |
| HaeIII | GGCC | 1 cut(s) | 335 |
| Hin1II | CATG | 5 cut(s) | 86, 524, 617, 697, 710 |
| HincII | GTYRAC | 1 cut(s) | 160 |
| HindII | GTYRAC | 1 cut(s) | 160 |
| HinfI | GANTC | 1 cut(s) | 253 |
| HphI | GGTGA | 1 cut(s) | 16 |
| Hpy166II | GTNNAC | 2 cut(s) | 160, 379 |
| Hpy188I | TCNGA | 1 cut(s) | 453 |
| Hpy188III | TCNNGA | 2 cut(s) | 614, 661 |
| Hpy8I | GTNNAC | 2 cut(s) | 160, 379 |
| HpyAV | CCTTC | 1 cut(s) | 127 |
| HpyCH4III | ACNGT | 3 cut(s) | 383, 447, 685 |
| HpyCH4V | TGCA | 7 cut(s) | 63, 144, 296, 464, 508, 538, 710 |
| HpyF3I | CTNAG | 1 cut(s) | 396 |
| Hsp92II | CATG | 5 cut(s) | 86, 524, 617, 697, 710 |
| Ksp22I | TGATCA | 1 cut(s) | 307 |
| Kzo9I | GATC | 3 cut(s) | 6, 307, 703 |
| LmnI | GCTCC | 2 cut(s) | 502, 702 |
| LpnPI | CCDG | 6 cut(s) | 38, 65, 332, 349, 537, 714 |
| Lsp1109I | GCAGC | 2 cut(s) | 238, 492 |
| LweI | GCATC | 1 cut(s) | 424 |
| MaeI | CTAG | 3 cut(s) | 261, 497, 638 |
| MaeIII | GTNAC | 2 cut(s) | 113, 679 |
| MalI | GATC | 3 cut(s) | 8, 309, 705 |
| MboI | GATC | 3 cut(s) | 6, 307, 703 |
| MboII | GAAGA | 5 cut(s) | 39, 42, 85, 184, 214 |
| MluCI | AATT | 7 cut(s) | 65, 240, 327, 361, 530, 588, 664 |
| MmeI | TCCRAC | 2 cut(s) | 258, 320 |
| MnlI | CCTC | 4 cut(s) | 71, 160, 163, 274 |
| MroXI | GAANNNNTTC | 1 cut(s) | 252 |
| MseI | TTAA | 4 cut(s) | 14, 516, 545, 591 |
| MslI | CAYNNNNRTG | 2 cut(s) | 167, 220 |
| MspR9I | CCNGG | 1 cut(s) | 53 |
| Mva1269I | GAATGC | 2 cut(s) | 39, 525 |
| MvaI | CCWGG | 1 cut(s) | 53 |
| NdeII | GATC | 3 cut(s) | 6, 307, 703 |
| NlaIII | CATG | 5 cut(s) | 86, 524, 617, 697, 710 |
| NlaIV | GGNNCC | 1 cut(s) | 334 |
| NspI | RCATGY | 1 cut(s) | 86 |
| PagI | TCATGA | 1 cut(s) | 613 |
| PctI | GAATGC | 2 cut(s) | 39, 525 |
| PdmI | GAANNNNTTC | 1 cut(s) | 252 |
| PfeI | GAWTC | 1 cut(s) | 253 |
| PfoI | TCCNGGA | 1 cut(s) | 51 |
| PkrI | GCNGC | 2 cut(s) | 228, 507 |
| Psp6I | CCWGG | 1 cut(s) | 51 |
| PspGI | CCWGG | 1 cut(s) | 51 |
| PspN4I | GGNNCC | 1 cut(s) | 334 |
| PspPI | GGNCC | 1 cut(s) | 333 |
| RseI | CAYNNNNRTG | 2 cut(s) | 167, 220 |
| SaqAI | TTAA | 4 cut(s) | 14, 516, 545, 591 |
| SatI | GCNGC | 2 cut(s) | 227, 506 |
| Sau3AI | GATC | 3 cut(s) | 6, 307, 703 |
| Sau96I | GGNCC | 1 cut(s) | 333 |
| ScrFI | CCNGG | 1 cut(s) | 53 |
| SetI | ASST | 7 cut(s) | 22, 266, 348, 421, 507, 634, 639 |
| SfaNI | GCATC | 1 cut(s) | 424 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 167, 220 |
| SmlI | CTYRAG | 1 cut(s) | 438 |
| SmoI | CTYRAG | 1 cut(s) | 438 |
| SpeI | ACTAGT | 1 cut(s) | 496 |
| Sse9I | AATT | 7 cut(s) | 65, 240, 327, 361, 530, 588, 664 |
| SspMI | CTAG | 3 cut(s) | 261, 497, 638 |
| StyD4I | CCNGG | 1 cut(s) | 51 |
| TaaI | ACNGT | 3 cut(s) | 383, 447, 685 |
| TasI | AATT | 7 cut(s) | 65, 240, 327, 361, 530, 588, 664 |
| TfiI | GAWTC | 1 cut(s) | 253 |
| Tru1I | TTAA | 4 cut(s) | 14, 516, 545, 591 |
| Tru9I | TTAA | 4 cut(s) | 14, 516, 545, 591 |
| TseI | GCWGC | 2 cut(s) | 226, 505 |
| TspDTI | ATGAA | 3 cut(s) | 185, 368, 630 |
| XapI | RAATTY | 2 cut(s) | 65, 664 |
| XceI | RCATGY | 1 cut(s) | 86 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 343 |
| XmiI | GTMKAC | 1 cut(s) | 378 |
| XmnI | GAANNNNTTC | 1 cut(s) | 252 |
| XspI | CTAG | 3 cut(s) | 261, 497, 638 |