TMV resistance protein N-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 845, 1124 |
| AarI | CACCTGC | 1 cut(s) | 1500 |
| AatII | GACGTC | 1 cut(s) | 624 |
| Acc36I | ACCTGC | 2 cut(s) | 1500, 1698 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1465, 3016, 3194 |
| AccI | GTMKAC | 2 cut(s) | 242, 2192 |
| AciI | CCGC | 7 cut(s) | 625, 651, 1483, 2923, 3116, 3296, 3377 |
| AclWI | GGATC | 6 cut(s) | 134, 320, 800, 2586, 3179, 3231 |
| AcoI | YGGCCR | 3 cut(s) | 921, 2695, 2814 |
| AcuI | CTGAAG | 8 cut(s) | 1034, 1110, 1305, 1593, 1691, 2622, 2729, 3449 |
| AcvI | CACGTG | 1 cut(s) | 2127 |
| AcyI | GRCGYC | 1 cut(s) | 621 |
| AfaI | GTAC | 6 cut(s) | 339, 762, 1161, 1356, 3002, 3134 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 1465, 1696, 3016, 3194 |
| AflIII | ACRYGT | 4 cut(s) | 1546, 1825, 2124, 2126 |
| AjnI | CCWGG | 2 cut(s) | 2977, 3046 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 189, 221, 546, 578, 1086, 1118 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 942, 974, 1380, 1412 |
| Alw21I | GWGCWC | 3 cut(s) | 8, 17, 1210 |
| Alw26I | GTCTC | 2 cut(s) | 418, 1812 |
| Alw44I | GTGCAC | 1 cut(s) | 1206 |
| AlwI | GGATC | 6 cut(s) | 134, 320, 800, 2586, 3179, 3231 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1789 |
| Ama87I | CYCGRG | 1 cut(s) | 1928 |
| AoxI | GGCC | 7 cut(s) | 208, 921, 2695, 2814, 3078, 3153, 3463 |
| ApaLI | GTGCAC | 1 cut(s) | 1206 |
| ApeKI | GCWGC | 7 cut(s) | 185, 304, 583, 2736, 3040, 3433, 3494 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 1628, 1660, 2500, 2532 |
| AseI | ATTAAT | 2 cut(s) | 1869, 3450 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1070, 1098, 1298, 1710, 2961 |
| AspLEI | GCGC | 1 cut(s) | 3557 |
| AspS9I | GGNCC | 5 cut(s) | 2975, 3153, 3293, 3379, 3560 |
| AsuC2I | CCSGG | 2 cut(s) | 1487, 1506 |
| AsuHPI | GGTGA | 6 cut(s) | 12, 410, 872, 2454, 2999, 3533 |
| AvaI | CYCGRG | 1 cut(s) | 1928 |
| AvaII | GGWCC | 4 cut(s) | 2975, 3293, 3379, 3560 |
| AxyI | CCTNAGG | 1 cut(s) | 1695 |
| BaeGI | GKGCMC | 1 cut(s) | 1210 |
| BalI | TGGCCA | 1 cut(s) | 2816 |
| BanII | GRGCYC | 1 cut(s) | 17 |
| BauI | CACGAG | 1 cut(s) | 699 |
| BbrPI | CACGTG | 1 cut(s) | 2127 |
| BbsI | GAAGAC | 8 cut(s) | 168, 1133, 1441, 2002, 2246, 2610, 2628, 3015 |
| Bbv12I | GWGCWC | 3 cut(s) | 8, 17, 1210 |
| BbvI | GCAGC | 7 cut(s) | 172, 291, 595, 2723, 3027, 3445, 3506 |
| BccI | CCATC | 6 cut(s) | 99, 1464, 1774, 2773, 3064, 3323 |
| BceAI | ACGGC | 1 cut(s) | 3568 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1358, 1392, 3425, 3459, 3473, 3507 |
| BciT130I | CCWGG | 2 cut(s) | 2979, 3048 |
| BciVI | GTATCC | 2 cut(s) | 61, 1758 |
| BcnI | CCSGG | 2 cut(s) | 1487, 1506 |
| BcoDI | GTCTC | 2 cut(s) | 418, 1812 |
| BfaI | CTAG | 7 cut(s) | 560, 972, 1154, 1277, 1304, 2706, 3501 |
| BfmI | CTRYAG | 1 cut(s) | 3033 |
| BfuAI | ACCTGC | 2 cut(s) | 1500, 1698 |
| BfuI | GTATCC | 2 cut(s) | 61, 1758 |
| BglII | AGATCT | 2 cut(s) | 1186, 1409 |
| BisI | GCNGC | 7 cut(s) | 186, 305, 584, 2737, 3041, 3434, 3495 |
| BlsI | GCNGC | 7 cut(s) | 187, 306, 585, 2738, 3042, 3435, 3496 |
| BmcAI | AGTACT | 2 cut(s) | 1161, 1356 |
| Bme1390I | CCNGG | 4 cut(s) | 1487, 1506, 2979, 3048 |
| Bme18I | GGWCC | 4 cut(s) | 2975, 3293, 3379, 3560 |
| BmeT110I | CYCGRG | 1 cut(s) | 1928 |
| BmgT120I | GGNCC | 5 cut(s) | 2975, 3153, 3293, 3379, 3560 |
| BmiI | GGNNCC | 3 cut(s) | 835, 1845, 3562 |
| BmrFI | CCNGG | 4 cut(s) | 1487, 1506, 2979, 3048 |
| BmrI | ACTGGG | 4 cut(s) | 1172, 1229, 3334, 3558 |
| BmsI | GCATC | 4 cut(s) | 245, 1434, 2618, 3052 |
| BmuI | ACTGGG | 4 cut(s) | 1172, 1229, 3334, 3558 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2127 |
| BpiI | GAAGAC | 8 cut(s) | 168, 1133, 1441, 2002, 2246, 2610, 2628, 3015 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 680, 712, 682, 714 |
| BpmI | CTGGAG | 1 cut(s) | 156 |
| BpuEI | CTTGAG | 2 cut(s) | 559, 2951 |
| BpuMI | CCSGG | 2 cut(s) | 1487, 1506 |
| BsaAI | YACGTR | 1 cut(s) | 2127 |
| BsaBI | GATNNNNATC | 1 cut(s) | 324 |
| BsaHI | GRCGYC | 1 cut(s) | 621 |
| BsaJI | CCNNGG | 1 cut(s) | 26 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 1465, 1696, 3016, 3194 |
| Bse1I | ACTGG | 9 cut(s) | 587, 1167, 1224, 1570, 2173, 2386, 3188, 3329, 3564 |
| Bse21I | CCTNAGG | 1 cut(s) | 1695 |
| Bse3DI | GCAATG | 4 cut(s) | 1308, 2616, 2912, 3139 |
| Bse8I | GATNNNNATC | 1 cut(s) | 324 |
| BseBI | CCWGG | 2 cut(s) | 2979, 3048 |
| BseDI | CCNNGG | 1 cut(s) | 26 |
| BseJI | GATNNNNATC | 1 cut(s) | 324 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 1465, 1696, 3016, 3194 |
| BseMI | GCAATG | 4 cut(s) | 1308, 2616, 2912, 3139 |
| BseMII | CTCAG | 5 cut(s) | 1202, 1796, 1865, 2671, 2676 |
| BseNI | ACTGG | 9 cut(s) | 587, 1167, 1224, 1570, 2173, 2386, 3188, 3329, 3564 |
| BseRI | GAGGAG | 4 cut(s) | 15, 2162, 3092, 3422 |
| BseSI | GKGCMC | 1 cut(s) | 1210 |
| BseXI | GCAGC | 7 cut(s) | 172, 291, 595, 2723, 3027, 3445, 3506 |
| BshFI | GGCC | 7 cut(s) | 210, 923, 2697, 2816, 3080, 3155, 3465 |
| BsiHKAI | GWGCWC | 3 cut(s) | 8, 17, 1210 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1928 |
| BsiSI | CCGG | 3 cut(s) | 924, 1486, 1505 |
| BslFI | GGGAC | 1 cut(s) | 367 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 1465, 1696, 3016, 3194 |
| BsmAI | GTCTC | 2 cut(s) | 418, 1812 |
| BsmFI | GGGAC | 1 cut(s) | 367 |
| BsmI | GAATGC | 2 cut(s) | 1070, 2560 |
| BsnI | GGCC | 7 cut(s) | 210, 923, 2697, 2816, 3080, 3155, 3465 |
| BsoBI | CYCGRG | 1 cut(s) | 1928 |
| Bsp1286I | GDGCHC | 3 cut(s) | 8, 17, 1210 |
| BspACI | CCGC | 7 cut(s) | 625, 651, 1483, 2923, 3116, 3296, 3377 |
| BspANI | GGCC | 7 cut(s) | 210, 923, 2697, 2816, 3080, 3155, 3465 |
| BspCNI | CTCAG | 5 cut(s) | 1203, 1795, 1866, 2670, 2677 |
| BspHI | TCATGA | 3 cut(s) | 379, 826, 1551 |
| BspLI | GGNNCC | 3 cut(s) | 835, 1845, 3562 |
| BspMI | ACCTGC | 2 cut(s) | 1500, 1698 |
| BspPI | GGATC | 6 cut(s) | 134, 320, 800, 2586, 3179, 3231 |
| BspQI | GCTCTTC | 1 cut(s) | 22 |
| BsrDI | GCAATG | 4 cut(s) | 1308, 2616, 2912, 3139 |
| BsrI | ACTGG | 9 cut(s) | 587, 1167, 1224, 1570, 2173, 2386, 3188, 3329, 3564 |
| BssECI | CCNNGG | 1 cut(s) | 26 |
| BssNI | GRCGYC | 1 cut(s) | 621 |
| BssSI | CACGAG | 1 cut(s) | 699 |
| Bst2BI | CACGAG | 1 cut(s) | 699 |
| Bst2UI | CCWGG | 2 cut(s) | 2979, 3048 |
| Bst6I | CTCTTC | 5 cut(s) | 22, 1053, 1177, 1219, 1281 |
| BstACI | GRCGYC | 1 cut(s) | 621 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 182, 1453 |
| BstBAI | YACGTR | 1 cut(s) | 2127 |
| BstC8I | GCNNGC | 3 cut(s) | 2047, 2741, 3082 |
| BstDEI | CTNAG | 9 cut(s) | 1190, 1211, 1695, 1782, 1799, 1874, 2582, 2657, 2685 |
| BstEII | GGTNACC | 2 cut(s) | 1082, 2460 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1694 |
| BstHHI | GCGC | 1 cut(s) | 3557 |
| BstMAI | GTCTC | 2 cut(s) | 418, 1812 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 12, 182, 1453, 3515 |
| BstNI | CCWGG | 2 cut(s) | 2979, 3048 |
| BstNSI | RCATGY | 4 cut(s) | 431, 1317, 1550, 1829 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2127 |
| BstPI | GGTNACC | 2 cut(s) | 1082, 2460 |
| BstSCI | CCNGG | 4 cut(s) | 1485, 1504, 2977, 3046 |
| BstSFI | CTRYAG | 1 cut(s) | 3033 |
| BstSLI | GKGCMC | 1 cut(s) | 1210 |
| BstV1I | GCAGC | 7 cut(s) | 172, 291, 595, 2723, 3027, 3445, 3506 |
| BstV2I | GAAGAC | 8 cut(s) | 168, 1133, 1441, 2002, 2246, 2610, 2628, 3015 |
| BstX2I | RGATCY | 4 cut(s) | 792, 1186, 1409, 2578 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 3596 |
| BstYI | RGATCY | 4 cut(s) | 792, 1186, 1409, 2578 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1695 |
| BsuI | GTATCC | 2 cut(s) | 61, 1758 |
| BsuRI | GGCC | 7 cut(s) | 210, 923, 2697, 2816, 3080, 3155, 3465 |
| BtsI | GCAGTG | 4 cut(s) | 99, 687, 2056, 2269 |
| BtsIMutI | CAGTG | 9 cut(s) | 99, 687, 1208, 1210, 2056, 2166, 2269, 3195, 3571 |
| BveI | ACCTGC | 2 cut(s) | 1500, 1698 |
| Cac8I | GCNNGC | 3 cut(s) | 2047, 2741, 3082 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1789 |
| CciI | TCATGA | 3 cut(s) | 379, 826, 1551 |
| CfoI | GCGC | 1 cut(s) | 3557 |
| Cfr13I | GGNCC | 5 cut(s) | 2975, 3153, 3293, 3379, 3560 |
| CpoI | CGGWCCG | 2 cut(s) | 3293, 3379 |
| CseI | GACGC | 3 cut(s) | 2240, 2615, 2680 |
| Csp6I | GTAC | 6 cut(s) | 338, 761, 1160, 1355, 3001, 3133 |
| CspI | CGGWCCG | 2 cut(s) | 3293, 3379 |
| CviQI | GTAC | 6 cut(s) | 338, 761, 1160, 1355, 3001, 3133 |
| DdeI | CTNAG | 9 cut(s) | 1190, 1211, 1695, 1782, 1799, 1874, 2582, 2657, 2685 |
| DraI | TTTAAA | 3 cut(s) | 435, 1912, 2100 |
| EaeI | YGGCCR | 3 cut(s) | 921, 2695, 2814 |
| Eam1104I | CTCTTC | 5 cut(s) | 22, 1053, 1177, 1219, 1281 |
| EarI | CTCTTC | 5 cut(s) | 22, 1053, 1177, 1219, 1281 |
| EciI | GGCGGA | 2 cut(s) | 666, 1472 |
| Ecl136II | GAGCTC | 1 cut(s) | 15 |
| Eco147I | AGGCCT | 1 cut(s) | 3465 |
| Eco24I | GRGCYC | 1 cut(s) | 17 |
| Eco32I | GATATC | 1 cut(s) | 3286 |
| Eco47I | GGWCC | 4 cut(s) | 2975, 3293, 3379, 3560 |
| Eco53kI | GAGCTC | 1 cut(s) | 15 |
| Eco57I | CTGAAG | 8 cut(s) | 1034, 1110, 1305, 1593, 1691, 2622, 2729, 3449 |
| Eco72I | CACGTG | 1 cut(s) | 2127 |
| Eco81I | CCTNAGG | 1 cut(s) | 1695 |
| Eco88I | CYCGRG | 1 cut(s) | 1928 |
| Eco91I | GGTNACC | 2 cut(s) | 1082, 2460 |
| EcoICRI | GAGCTC | 1 cut(s) | 15 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1694 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3560 |
| EcoO65I | GGTNACC | 2 cut(s) | 1082, 2460 |
| EcoRI | GAATTC | 2 cut(s) | 270, 463 |
| EcoRII | CCWGG | 2 cut(s) | 2977, 3046 |
| EcoRV | GATATC | 1 cut(s) | 3286 |
| EcoT22I | ATGCAT | 2 cut(s) | 238, 284 |
| EcoT38I | GRGCYC | 1 cut(s) | 17 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1086, 1118 |
| FaqI | GGGAC | 1 cut(s) | 367 |
| FauI | CCCGC | 2 cut(s) | 2930, 3123 |
| FblI | GTMKAC | 2 cut(s) | 242, 2192 |
| Fnu4HI | GCNGC | 7 cut(s) | 186, 305, 584, 2737, 3041, 3434, 3495 |
| FriOI | GRGCYC | 1 cut(s) | 17 |
| Fsp4HI | GCNGC | 7 cut(s) | 186, 305, 584, 2737, 3041, 3434, 3495 |
| FspBI | CTAG | 7 cut(s) | 560, 972, 1154, 1277, 1304, 2706, 3501 |
| GlaI | GCGC | 1 cut(s) | 3556 |
| GluI | GCNGC | 7 cut(s) | 186, 305, 584, 2737, 3041, 3434, 3495 |
| GsuI | CTGGAG | 1 cut(s) | 156 |
| HaeIII | GGCC | 7 cut(s) | 210, 923, 2697, 2816, 3080, 3155, 3465 |
| HapII | CCGG | 3 cut(s) | 924, 1486, 1505 |
| HgaI | GACGC | 3 cut(s) | 2240, 2615, 2680 |
| HhaI | GCGC | 1 cut(s) | 3557 |
| Hin1I | GRCGYC | 1 cut(s) | 621 |
| Hin6I | GCGC | 1 cut(s) | 3555 |
| HinP1I | GCGC | 1 cut(s) | 3555 |
| HincII | GTYRAC | 5 cut(s) | 243, 811, 1972, 2863, 3212 |
| HindII | GTYRAC | 5 cut(s) | 243, 811, 1972, 2863, 3212 |
| HindIII | AAGCTT | 5 cut(s) | 366, 1801, 2315, 2363, 2741 |
| HpaI | GTTAAC | 1 cut(s) | 2863 |
| HpaII | CCGG | 3 cut(s) | 924, 1486, 1505 |
| HphI | GGTGA | 6 cut(s) | 12, 410, 872, 2454, 2999, 3533 |
| Hpy99I | CGWCG | 3 cut(s) | 244, 2530, 2696 |
| HpyAV | CCTTC | 9 cut(s) | 411, 799, 824, 1012, 1577, 1940, 2409, 3129, 3476 |
| HpyCH4IV | ACGT | 4 cut(s) | 621, 1539, 2126, 2189 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 12, 182, 1453, 3515 |
| HpyF3I | CTNAG | 9 cut(s) | 1190, 1211, 1695, 1782, 1799, 1874, 2582, 2657, 2685 |
| HpySE526I | ACGT | 4 cut(s) | 621, 1539, 2126, 2189 |
| Hsp92I | GRCGYC | 1 cut(s) | 621 |
| HspAI | GCGC | 1 cut(s) | 3555 |
| KspAI | GTTAAC | 1 cut(s) | 2863 |
| LguI | GCTCTTC | 1 cut(s) | 22 |
| LmnI | GCTCC | 5 cut(s) | 833, 1461, 1843, 2149, 3409 |
| Lsp1109I | GCAGC | 7 cut(s) | 172, 291, 595, 2723, 3027, 3445, 3506 |
| LweI | GCATC | 4 cut(s) | 245, 1434, 2618, 3052 |
| MaeI | CTAG | 7 cut(s) | 560, 972, 1154, 1277, 1304, 2706, 3501 |
| MaeII | ACGT | 4 cut(s) | 621, 1539, 2126, 2189 |
| MfeI | CAATTG | 2 cut(s) | 189, 1980 |
| MflI | RGATCY | 4 cut(s) | 792, 1186, 1409, 2578 |
| MhlI | GDGCHC | 3 cut(s) | 8, 17, 1210 |
| MlsI | TGGCCA | 1 cut(s) | 2816 |
| MluNI | TGGCCA | 1 cut(s) | 2816 |
| MlyI | GAGTC | 5 cut(s) | 1274, 1592, 1624, 1885, 3093 |
| MmeI | TCCRAC | 2 cut(s) | 87, 544 |
| Mox20I | TGGCCA | 1 cut(s) | 2816 |
| Mph1103I | ATGCAT | 2 cut(s) | 238, 284 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1070, 1098, 1298, 1710, 2961 |
| MscI | TGGCCA | 1 cut(s) | 2816 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1592, 1625, 3477 |
| Msp20I | TGGCCA | 1 cut(s) | 2816 |
| MspI | CCGG | 3 cut(s) | 924, 1486, 1505 |
| MspR9I | CCNGG | 4 cut(s) | 1487, 1506, 2979, 3048 |
| MunI | CAATTG | 2 cut(s) | 189, 1980 |
| Mva1269I | GAATGC | 2 cut(s) | 1070, 2560 |
| MvaI | CCWGG | 2 cut(s) | 2979, 3048 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 12, 182, 1453, 3515 |
| NciI | CCSGG | 2 cut(s) | 1487, 1506 |
| NlaIV | GGNNCC | 3 cut(s) | 835, 1845, 3562 |
| NmuCI | GTSAC | 8 cut(s) | 398, 860, 1345, 1627, 1877, 2460, 2516, 2585 |
| NsiI | ATGCAT | 2 cut(s) | 238, 284 |
| NspI | RCATGY | 4 cut(s) | 431, 1317, 1550, 1829 |
| PaeR7I | CTCGAG | 1 cut(s) | 1928 |
| PagI | TCATGA | 3 cut(s) | 379, 826, 1551 |
| PaqCI | CACCTGC | 1 cut(s) | 1500 |
| PceI | AGGCCT | 1 cut(s) | 3465 |
| PciI | ACATGT | 2 cut(s) | 1546, 1825 |
| PciSI | GCTCTTC | 1 cut(s) | 22 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2534 |
| PctI | GAATGC | 2 cut(s) | 1070, 2560 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1070, 1098, 1298, 1710, 2961 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1465, 3016, 3194 |
| PfoI | TCCNGGA | 1 cut(s) | 2977 |
| PkrI | GCNGC | 7 cut(s) | 187, 306, 585, 2738, 3042, 3435, 3496 |
| PleI | GAGTC | 5 cut(s) | 1274, 1592, 1624, 1884, 3093 |
| PmaCI | CACGTG | 1 cut(s) | 2127 |
| PmlI | CACGTG | 1 cut(s) | 2127 |
| PpsI | GAGTC | 5 cut(s) | 1274, 1592, 1624, 1884, 3093 |
| Ppu21I | YACGTR | 1 cut(s) | 2127 |
| PpuMI | RGGWCCY | 1 cut(s) | 3560 |
| PscI | ACATGT | 2 cut(s) | 1546, 1825 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2127 |
| PshBI | ATTAAT | 2 cut(s) | 1869, 3450 |
| PsiI | TTATAA | 2 cut(s) | 845, 1124 |
| Psp124BI | GAGCTC | 1 cut(s) | 17 |
| Psp5II | RGGWCCY | 1 cut(s) | 3560 |
| Psp6I | CCWGG | 2 cut(s) | 2977, 3046 |
| PspCI | CACGTG | 1 cut(s) | 2127 |
| PspEI | GGTNACC | 2 cut(s) | 1082, 2460 |
| PspGI | CCWGG | 2 cut(s) | 2977, 3046 |
| PspN4I | GGNNCC | 3 cut(s) | 835, 1845, 3562 |
| PspPI | GGNCC | 5 cut(s) | 2975, 3153, 3293, 3379, 3560 |
| PspPPI | RGGWCCY | 1 cut(s) | 3560 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1789 |
| PsuI | RGATCY | 4 cut(s) | 792, 1186, 1409, 2578 |
| RsaI | GTAC | 6 cut(s) | 339, 762, 1161, 1356, 3002, 3134 |
| RsaNI | GTAC | 6 cut(s) | 338, 761, 1160, 1355, 3001, 3133 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1592, 1625, 3477 |
| Rsr2I | CGGWCCG | 2 cut(s) | 3293, 3379 |
| RsrII | CGGWCCG | 2 cut(s) | 3293, 3379 |
| SacI | GAGCTC | 1 cut(s) | 17 |
| SalI | GTCGAC | 1 cut(s) | 241 |
| SapI | GCTCTTC | 1 cut(s) | 22 |
| SatI | GCNGC | 7 cut(s) | 186, 305, 584, 2737, 3041, 3434, 3495 |
| Sau96I | GGNCC | 5 cut(s) | 2975, 3153, 3293, 3379, 3560 |
| ScaI | AGTACT | 2 cut(s) | 1161, 1356 |
| SchI | GAGTC | 5 cut(s) | 1274, 1592, 1624, 1885, 3093 |
| ScrFI | CCNGG | 4 cut(s) | 1487, 1506, 2979, 3048 |
| SduI | GDGCHC | 3 cut(s) | 8, 17, 1210 |
| SfaNI | GCATC | 4 cut(s) | 245, 1434, 2618, 3052 |
| SfcI | CTRYAG | 1 cut(s) | 3033 |
| Sfr274I | CTCGAG | 1 cut(s) | 1928 |
| SinI | GGWCC | 4 cut(s) | 2975, 3293, 3379, 3560 |
| SlaI | CTCGAG | 1 cut(s) | 1928 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1592, 1625, 3477 |
| SmlI | CTYRAG | 3 cut(s) | 574, 1928, 2930 |
| SmoI | CTYRAG | 3 cut(s) | 574, 1928, 2930 |
| SseBI | AGGCCT | 1 cut(s) | 3465 |
| SsiI | CCGC | 7 cut(s) | 625, 651, 1483, 2923, 3116, 3296, 3377 |
| SspI | AATATT | 2 cut(s) | 917, 3176 |
| SspMI | CTAG | 7 cut(s) | 560, 972, 1154, 1277, 1304, 2706, 3501 |
| SstI | GAGCTC | 1 cut(s) | 17 |
| StuI | AGGCCT | 1 cut(s) | 3465 |
| StyD4I | CCNGG | 4 cut(s) | 1485, 1504, 2977, 3046 |
| TaiI | ACGT | 4 cut(s) | 624, 1542, 2129, 2192 |
| TatI | WGTACW | 3 cut(s) | 760, 1159, 1354 |
| TscAI | CASTG | 9 cut(s) | 106, 687, 1210, 1215, 2056, 2173, 2269, 3195, 3571 |
| TseFI | GTSAC | 8 cut(s) | 398, 860, 1345, 1627, 1877, 2460, 2516, 2585 |
| TseI | GCWGC | 7 cut(s) | 185, 304, 583, 2736, 3040, 3433, 3494 |
| Tsp45I | GTSAC | 8 cut(s) | 398, 860, 1345, 1627, 1877, 2460, 2516, 2585 |
| TspGWI | ACGGA | 6 cut(s) | 355, 1740, 1741, 1856, 2514, 3371 |
| TspRI | CASTG | 9 cut(s) | 106, 687, 1210, 1215, 2056, 2173, 2269, 3195, 3571 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1465, 3016, 3194 |
| VneI | GTGCAC | 1 cut(s) | 1206 |
| VpaK11BI | GGWCC | 4 cut(s) | 2975, 3293, 3379, 3560 |
| VspI | ATTAAT | 2 cut(s) | 1869, 3450 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1694 |
| XbaI | TCTAGA | 3 cut(s) | 1153, 1276, 2705 |
| XceI | RCATGY | 4 cut(s) | 431, 1317, 1550, 1829 |
| XhoI | CTCGAG | 1 cut(s) | 1928 |
| XmiI | GTMKAC | 2 cut(s) | 242, 2192 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1070, 1098, 1298, 1710, 2961 |
| XspI | CTAG | 7 cut(s) | 560, 972, 1154, 1277, 1304, 2706, 3501 |
| ZraI | GACGTC | 1 cut(s) | 622 |
| ZrmI | AGTACT | 2 cut(s) | 1161, 1356 |
| Zsp2I | ATGCAT | 2 cut(s) | 238, 284 |