TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 20 - 196 | 5.7e-55 | TIR domain |
| TIR_2 | PF13676 | 22 - 119 | 1.4e-15 | TIR domain |
| NB-ARC | PF00931 | 218 - 370 | 8.9e-19 | NB-ARC domain |
| NACHT | PF05729 | 228 - 362 | 6.7e-08 | NACHT domain |
| WHD_ROQ1 | PF23282 | 437 - 505 | 3.3e-18 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 663 - 771 | 1.6e-08 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 695 - 781 | 3.5e-12 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 779 - 823 | 5.5e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 781 - 933 | 1.6e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 992 |
| Acc36I | ACCTGC | 2 cut(s) | 2521, 2923 |
| AccB1I | GGYRCC | 1 cut(s) | 3380 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1412 |
| AccBSI | CCGCTC | 1 cut(s) | 561 |
| AccI | GTMKAC | 1 cut(s) | 3388 |
| AccII | CGCG | 1 cut(s) | 501 |
| AciI | CCGC | 5 cut(s) | 561, 3047, 3278, 3593, 3770 |
| AclWI | GGATC | 6 cut(s) | 344, 992, 1603, 2069, 3833, 3846 |
| AcoI | YGGCCR | 1 cut(s) | 474 |
| AcuI | CTGAAG | 5 cut(s) | 1469, 1601, 3543, 3650, 3864 |
| AcvI | CACGTG | 1 cut(s) | 3962 |
| AcyI | GRCGYC | 1 cut(s) | 2020 |
| AfaI | GTAC | 5 cut(s) | 402, 565, 2691, 2937, 3686 |
| AfeI | AGCGCT | 1 cut(s) | 413 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 85, 1412, 2466, 3361, 3579, 3719, 3785, 3857 |
| AflII | CTTAAG | 1 cut(s) | 1076 |
| AflIII | ACRYGT | 1 cut(s) | 2877 |
| AgeI | ACCGGT | 1 cut(s) | 2956 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2605 |
| AjnI | CCWGG | 4 cut(s) | 998, 1531, 2491, 4013 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 946, 978 |
| Alw21I | GWGCWC | 6 cut(s) | 1426, 1713, 1756, 2122, 2584, 2852 |
| Alw26I | GTCTC | 5 cut(s) | 792, 1526, 1916, 2296, 3651 |
| Alw44I | GTGCAC | 1 cut(s) | 2118 |
| AlwI | GGATC | 6 cut(s) | 344, 992, 1603, 2069, 3833, 3846 |
| Ama87I | CYCGRG | 5 cut(s) | 244, 468, 2126, 2351, 3520 |
| Aor51HI | AGCGCT | 1 cut(s) | 413 |
| AoxI | GGCC | 3 cut(s) | 474, 1072, 1723 |
| ApaLI | GTGCAC | 1 cut(s) | 2118 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 256, 288 |
| AseI | ATTAAT | 1 cut(s) | 3066 |
| AsiGI | ACCGGT | 1 cut(s) | 2956 |
| Asp700I | GAANNNNTTC | 7 cut(s) | 1097, 1506, 1862, 2691, 3308, 3663, 3708 |
| AspLEI | GCGC | 1 cut(s) | 414 |
| AspS9I | GGNCC | 4 cut(s) | 2495, 2721, 3058, 3191 |
| AsuC2I | CCSGG | 1 cut(s) | 3195 |
| AsuHPI | GGTGA | 5 cut(s) | 95, 139, 1384, 1811, 2971 |
| AsuII | TTCGAA | 1 cut(s) | 1432 |
| AvaI | CYCGRG | 5 cut(s) | 244, 468, 2126, 2351, 3520 |
| AvaII | GGWCC | 4 cut(s) | 2495, 2721, 3058, 3191 |
| BaeGI | GKGCMC | 3 cut(s) | 2122, 3385, 3585 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1568, 1601 |
| BalI | TGGCCA | 1 cut(s) | 476 |
| BamHI | GGATCC | 1 cut(s) | 3838 |
| BanI | GGYRCC | 1 cut(s) | 3380 |
| BanII | GRGCYC | 2 cut(s) | 1756, 2584 |
| BauI | CACGAG | 1 cut(s) | 3218 |
| BbrPI | CACGTG | 1 cut(s) | 3962 |
| Bbv12I | GWGCWC | 6 cut(s) | 1426, 1713, 1756, 2122, 2584, 2852 |
| BceAI | ACGGC | 1 cut(s) | 3797 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 744, 778, 3209, 3243, 3310, 3344 |
| BciT130I | CCWGG | 4 cut(s) | 1000, 1533, 2493, 4015 |
| BciVI | GTATCC | 1 cut(s) | 82 |
| BclI | TGATCA | 3 cut(s) | 745, 1108, 2794 |
| BcnI | CCSGG | 1 cut(s) | 3195 |
| BcoDI | GTCTC | 5 cut(s) | 792, 1526, 1916, 2296, 3651 |
| BfaI | CTAG | 5 cut(s) | 128, 792, 2280, 2292, 3918 |
| BfmI | CTRYAG | 5 cut(s) | 648, 1449, 2193, 2814, 3739 |
| BfoI | RGCGCY | 1 cut(s) | 415 |
| BfrI | CTTAAG | 1 cut(s) | 1076 |
| BfuAI | ACCTGC | 2 cut(s) | 2521, 2923 |
| BfuI | GTATCC | 1 cut(s) | 82 |
| BglII | AGATCT | 1 cut(s) | 823 |
| BmcAI | AGTACT | 2 cut(s) | 2691, 3686 |
| Bme1390I | CCNGG | 5 cut(s) | 1000, 1533, 2493, 3195, 4015 |
| Bme18I | GGWCC | 4 cut(s) | 2495, 2721, 3058, 3191 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2605 |
| BmeT110I | CYCGRG | 5 cut(s) | 244, 468, 2126, 2351, 3520 |
| BmgT120I | GGNCC | 4 cut(s) | 2495, 2721, 3058, 3191 |
| BmiI | GGNNCC | 3 cut(s) | 3193, 3382, 3840 |
| BmrFI | CCNGG | 5 cut(s) | 1000, 1533, 2493, 3195, 4015 |
| BmrI | ACTGGG | 2 cut(s) | 3258, 3453 |
| BmsI | GCATC | 7 cut(s) | 1461, 1591, 1651, 3289, 3336, 3965, 4133 |
| BmuI | ACTGGG | 2 cut(s) | 3258, 3453 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1948, 1980 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1174, 1622 |
| Bpu14I | TTCGAA | 1 cut(s) | 1432 |
| BpuEI | CTTGAG | 2 cut(s) | 1617, 1973 |
| BpuMI | CCSGG | 1 cut(s) | 3195 |
| BsaAI | YACGTR | 1 cut(s) | 3962 |
| BsaBI | GATNNNNATC | 2 cut(s) | 348, 2793 |
| BsaHI | GRCGYC | 1 cut(s) | 2020 |
| BsaJI | CCNNGG | 7 cut(s) | 79, 999, 1532, 1560, 2491, 3183, 3756 |
| BsaWI | WCCGGW | 2 cut(s) | 374, 2956 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2612, 2642 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 85, 1412, 2466, 3361, 3579, 3719, 3785, 3857 |
| Bse118I | RCCGGY | 1 cut(s) | 2956 |
| Bse1I | ACTGG | 7 cut(s) | 2207, 2233, 2770, 3135, 3253, 3448, 3728 |
| Bse3DI | GCAATG | 3 cut(s) | 841, 2254, 4118 |
| Bse8I | GATNNNNATC | 2 cut(s) | 348, 2793 |
| BseBI | CCWGG | 4 cut(s) | 1000, 1533, 2493, 4015 |
| BseDI | CCNNGG | 7 cut(s) | 79, 999, 1532, 1560, 2491, 3183, 3756 |
| BseJI | GATNNNNATC | 2 cut(s) | 348, 2793 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 85, 1412, 2466, 3361, 3579, 3719, 3785, 3857 |
| BseMI | GCAATG | 3 cut(s) | 841, 2254, 4118 |
| BseMII | CTCAG | 6 cut(s) | 85, 1297, 1734, 1797, 2029, 4142 |
| BseNI | ACTGG | 7 cut(s) | 2207, 2233, 2770, 3135, 3253, 3448, 3728 |
| BseRI | GAGGAG | 1 cut(s) | 13 |
| BseSI | GKGCMC | 3 cut(s) | 2122, 3385, 3585 |
| BsgI | GTGCAG | 3 cut(s) | 1263, 2491, 3340 |
| Bsh1236I | CGCG | 1 cut(s) | 501 |
| BshFI | GGCC | 3 cut(s) | 476, 1074, 1725 |
| BshNI | GGYRCC | 1 cut(s) | 3380 |
| BshTI | ACCGGT | 1 cut(s) | 2956 |
| BsiHKAI | GWGCWC | 6 cut(s) | 1426, 1713, 1756, 2122, 2584, 2852 |
| BsiHKCI | CYCGRG | 5 cut(s) | 244, 468, 2126, 2351, 3520 |
| BsiSI | CCGG | 3 cut(s) | 375, 2957, 3195 |
| BslFI | GGGAC | 6 cut(s) | 19, 1016, 1179, 1928, 2087, 3177 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 85, 1412, 2466, 3361, 3579, 3719, 3785, 3857 |
| BsmAI | GTCTC | 5 cut(s) | 792, 1526, 1916, 2296, 3651 |
| BsmBI | CGTCTC | 2 cut(s) | 792, 3651 |
| BsmFI | GGGAC | 6 cut(s) | 19, 1016, 1179, 1928, 2087, 3177 |
| BsmI | GAATGC | 1 cut(s) | 3310 |
| BsnI | GGCC | 3 cut(s) | 476, 1074, 1725 |
| BsoBI | CYCGRG | 5 cut(s) | 244, 468, 2126, 2351, 3520 |
| Bsp119I | TTCGAA | 1 cut(s) | 1432 |
| Bsp1286I | GDGCHC | 8 cut(s) | 1426, 1713, 1756, 2122, 2584, 2852, 3385, 3585 |
| Bsp1407I | TGTACA | 1 cut(s) | 400 |
| Bsp19I | CCATGG | 2 cut(s) | 1560, 3183 |
| BspACI | CCGC | 5 cut(s) | 561, 3047, 3278, 3593, 3770 |
| BspANI | GGCC | 3 cut(s) | 476, 1074, 1725 |
| BspCNI | CTCAG | 6 cut(s) | 84, 1296, 1735, 1798, 2028, 4141 |
| BspFNI | CGCG | 1 cut(s) | 501 |
| BspHI | TCATGA | 1 cut(s) | 2917 |
| BspLI | GGNNCC | 3 cut(s) | 3193, 3382, 3840 |
| BspMAI | CTGCAG | 2 cut(s) | 2818, 3743 |
| BspMI | ACCTGC | 2 cut(s) | 2521, 2923 |
| BspPI | GGATC | 6 cut(s) | 344, 992, 1603, 2069, 3833, 3846 |
| BspQI | GCTCTTC | 3 cut(s) | 159, 402, 3840 |
| BspT104I | TTCGAA | 1 cut(s) | 1432 |
| BspT107I | GGYRCC | 1 cut(s) | 3380 |
| BspTI | CTTAAG | 1 cut(s) | 1076 |
| BsrBI | CCGCTC | 1 cut(s) | 561 |
| BsrDI | GCAATG | 3 cut(s) | 841, 2254, 4118 |
| BsrFI | RCCGGY | 1 cut(s) | 2956 |
| BsrGI | TGTACA | 1 cut(s) | 400 |
| BsrI | ACTGG | 7 cut(s) | 2207, 2233, 2770, 3135, 3253, 3448, 3728 |
| BssAI | RCCGGY | 1 cut(s) | 2956 |
| BssECI | CCNNGG | 7 cut(s) | 79, 999, 1532, 1560, 2491, 3183, 3756 |
| BssNI | GRCGYC | 1 cut(s) | 2020 |
| BssSI | CACGAG | 1 cut(s) | 3218 |
| BssT1I | CCWWGG | 2 cut(s) | 1560, 3183 |
| Bst2BI | CACGAG | 1 cut(s) | 3218 |
| Bst2UI | CCWGG | 4 cut(s) | 1000, 1533, 2493, 4015 |
| Bst4CI | ACNGT | 9 cut(s) | 803, 962, 2048, 2314, 2454, 2721, 3074, 3473, 3823 |
| Bst6I | CTCTTC | 5 cut(s) | 40, 159, 402, 2376, 3840 |
| BstACI | GRCGYC | 1 cut(s) | 2020 |
| BstAFI | CTTAAG | 1 cut(s) | 1076 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1480 |
| BstAUI | TGTACA | 1 cut(s) | 400 |
| BstBAI | YACGTR | 1 cut(s) | 3962 |
| BstBI | TTCGAA | 1 cut(s) | 1432 |
| BstC8I | GCNNGC | 5 cut(s) | 207, 942, 1628, 3551, 3585 |
| BstDSI | CCRYGG | 2 cut(s) | 1560, 3183 |
| BstEII | GGTNACC | 1 cut(s) | 1372 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3855 |
| BstFNI | CGCG | 1 cut(s) | 501 |
| BstH2I | RGCGCY | 1 cut(s) | 415 |
| BstHHI | GCGC | 1 cut(s) | 414 |
| BstMAI | GTCTC | 5 cut(s) | 792, 1526, 1916, 2296, 3651 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1480, 2469, 3809 |
| BstNI | CCWGG | 4 cut(s) | 1000, 1533, 2493, 4015 |
| BstNSI | RCATGY | 4 cut(s) | 1344, 2608, 2881, 3810 |
| BstPI | GGTNACC | 1 cut(s) | 1372 |
| BstSCI | CCNGG | 5 cut(s) | 998, 1531, 2491, 3193, 4013 |
| BstSFI | CTRYAG | 5 cut(s) | 648, 1449, 2193, 2814, 3739 |
| BstSLI | GKGCMC | 3 cut(s) | 2122, 3385, 3585 |
| BstUI | CGCG | 1 cut(s) | 501 |
| BstX2I | RGATCY | 3 cut(s) | 349, 823, 3838 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1384, 3248 |
| BstYI | RGATCY | 3 cut(s) | 349, 823, 3838 |
| BsuI | GTATCC | 1 cut(s) | 82 |
| BsuRI | GGCC | 3 cut(s) | 476, 1074, 1725 |
| BtgI | CCRYGG | 2 cut(s) | 1560, 3183 |
| BtsI | GCAGTG | 2 cut(s) | 2479, 3748 |
| BtsIMutI | CAGTG | 5 cut(s) | 2214, 2479, 3246, 3323, 3748 |
| BveI | ACCTGC | 2 cut(s) | 2521, 2923 |
| Cac8I | GCNNGC | 5 cut(s) | 207, 942, 1628, 3551, 3585 |
| CciI | TCATGA | 1 cut(s) | 2917 |
| CfoI | GCGC | 1 cut(s) | 414 |
| Cfr10I | RCCGGY | 1 cut(s) | 2956 |
| Cfr13I | GGNCC | 4 cut(s) | 2495, 2721, 3058, 3191 |
| CseI | GACGC | 3 cut(s) | 2028, 2210, 3906 |
| Csp6I | GTAC | 5 cut(s) | 401, 564, 2690, 2936, 3685 |
| CspAI | ACCGGT | 1 cut(s) | 2956 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1813, 1848 |
| CviQI | GTAC | 5 cut(s) | 401, 564, 2690, 2936, 3685 |
| DraI | TTTAAA | 1 cut(s) | 3567 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2605 |
| EaeI | YGGCCR | 1 cut(s) | 474 |
| Eam1104I | CTCTTC | 5 cut(s) | 40, 159, 402, 2376, 3840 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2605 |
| EarI | CTCTTC | 5 cut(s) | 40, 159, 402, 2376, 3840 |
| Ecl136II | GAGCTC | 2 cut(s) | 1754, 2582 |
| Eco130I | CCWWGG | 2 cut(s) | 1560, 3183 |
| Eco24I | GRGCYC | 2 cut(s) | 1756, 2584 |
| Eco32I | GATATC | 3 cut(s) | 1270, 1772, 2915 |
| Eco47I | GGWCC | 4 cut(s) | 2495, 2721, 3058, 3191 |
| Eco47III | AGCGCT | 1 cut(s) | 413 |
| Eco53kI | GAGCTC | 2 cut(s) | 1754, 2582 |
| Eco57I | CTGAAG | 5 cut(s) | 1469, 1601, 3543, 3650, 3864 |
| Eco72I | CACGTG | 1 cut(s) | 3962 |
| Eco88I | CYCGRG | 5 cut(s) | 244, 468, 2126, 2351, 3520 |
| Eco91I | GGTNACC | 1 cut(s) | 1372 |
| EcoICRI | GAGCTC | 2 cut(s) | 1754, 2582 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3855 |
| EcoO109I | RGGNCCY | 2 cut(s) | 3058, 3191 |
| EcoO65I | GGTNACC | 1 cut(s) | 1372 |
| EcoRI | GAATTC | 2 cut(s) | 2274, 3723 |
| EcoRII | CCWGG | 4 cut(s) | 998, 1531, 2491, 4013 |
| EcoRV | GATATC | 3 cut(s) | 1270, 1772, 2915 |
| EcoT14I | CCWWGG | 2 cut(s) | 1560, 3183 |
| EcoT22I | ATGCAT | 2 cut(s) | 1476, 3958 |
| EcoT38I | GRGCYC | 2 cut(s) | 1756, 2584 |
| ErhI | CCWWGG | 2 cut(s) | 1560, 3183 |
| Esp3I | CGTCTC | 2 cut(s) | 792, 3651 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 410, 442, 813, 845, 3528, 3560 |
| FaqI | GGGAC | 6 cut(s) | 19, 1016, 1179, 1928, 2087, 3177 |
| FauI | CCCGC | 3 cut(s) | 3054, 3586, 3777 |
| FauNDI | CATATG | 4 cut(s) | 58, 2864, 2971, 3358 |
| FbaI | TGATCA | 3 cut(s) | 745, 1108, 2794 |
| FblI | GTMKAC | 1 cut(s) | 3388 |
| FriOI | GRGCYC | 2 cut(s) | 1756, 2584 |
| FspBI | CTAG | 5 cut(s) | 128, 792, 2280, 2292, 3918 |
| GlaI | GCGC | 1 cut(s) | 413 |
| HaeII | RGCGCY | 1 cut(s) | 415 |
| HaeIII | GGCC | 3 cut(s) | 476, 1074, 1725 |
| HapII | CCGG | 3 cut(s) | 375, 2957, 3195 |
| HgaI | GACGC | 3 cut(s) | 2028, 2210, 3906 |
| HhaI | GCGC | 1 cut(s) | 414 |
| Hin1I | GRCGYC | 1 cut(s) | 2020 |
| Hin6I | GCGC | 1 cut(s) | 412 |
| HinP1I | GCGC | 1 cut(s) | 412 |
| HindIII | AAGCTT | 5 cut(s) | 723, 1079, 1811, 2681, 2732 |
| HpaII | CCGG | 3 cut(s) | 375, 2957, 3195 |
| HphI | GGTGA | 5 cut(s) | 95, 139, 1384, 1811, 2971 |
| Hpy166II | GTNNAC | 6 cut(s) | 401, 1819, 2120, 2954, 3389, 3896 |
| Hpy8I | GTNNAC | 6 cut(s) | 401, 1819, 2120, 2954, 3389, 3896 |
| HpyCH4III | ACNGT | 9 cut(s) | 803, 962, 2048, 2314, 2454, 2721, 3074, 3473, 3823 |
| HpyCH4IV | ACGT | 3 cut(s) | 63, 3609, 3961 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1480, 2469, 3809 |
| HpySE526I | ACGT | 3 cut(s) | 63, 3609, 3961 |
| Hsp92I | GRCGYC | 1 cut(s) | 2020 |
| HspAI | GCGC | 1 cut(s) | 412 |
| Ksp22I | TGATCA | 3 cut(s) | 745, 1108, 2794 |
| LguI | GCTCTTC | 3 cut(s) | 159, 402, 3840 |
| LmnI | GCTCC | 2 cut(s) | 1716, 2579 |
| LweI | GCATC | 7 cut(s) | 1461, 1591, 1651, 3289, 3336, 3965, 4133 |
| MaeI | CTAG | 5 cut(s) | 128, 792, 2280, 2292, 3918 |
| MaeII | ACGT | 3 cut(s) | 63, 3609, 3961 |
| MaeIII | GTNAC | 9 cut(s) | 1040, 1372, 2508, 2558, 2761, 2775, 3197, 3252, 3966 |
| MbiI | CCGCTC | 1 cut(s) | 561 |
| MfeI | CAATTG | 5 cut(s) | 935, 1010, 1890, 2214, 3345 |
| MflI | RGATCY | 3 cut(s) | 349, 823, 3838 |
| MhlI | GDGCHC | 8 cut(s) | 1426, 1713, 1756, 2122, 2584, 2852, 3385, 3585 |
| MlsI | TGGCCA | 1 cut(s) | 476 |
| MluNI | TGGCCA | 1 cut(s) | 476 |
| MlyI | GAGTC | 5 cut(s) | 460, 521, 1898, 1957, 3512 |
| MmeI | TCCRAC | 6 cut(s) | 595, 909, 1070, 1365, 2223, 2367 |
| Mox20I | TGGCCA | 1 cut(s) | 476 |
| Mph1103I | ATGCAT | 2 cut(s) | 1476, 3958 |
| MroXI | GAANNNNTTC | 7 cut(s) | 1097, 1506, 1862, 2691, 3308, 3663, 3708 |
| MscI | TGGCCA | 1 cut(s) | 476 |
| MslI | CAYNNNNRTG | 8 cut(s) | 117, 585, 1565, 2700, 3588, 3944, 4043, 4053 |
| Msp20I | TGGCCA | 1 cut(s) | 476 |
| MspCI | CTTAAG | 1 cut(s) | 1076 |
| MspI | CCGG | 3 cut(s) | 375, 2957, 3195 |
| MspR9I | CCNGG | 5 cut(s) | 1000, 1533, 2493, 3195, 4015 |
| MunI | CAATTG | 5 cut(s) | 935, 1010, 1890, 2214, 3345 |
| Mva1269I | GAATGC | 1 cut(s) | 3310 |
| MvaI | CCWGG | 4 cut(s) | 1000, 1533, 2493, 4015 |
| MvnI | CGCG | 1 cut(s) | 501 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1480, 2469, 3809 |
| NciI | CCSGG | 1 cut(s) | 3195 |
| NcoI | CCATGG | 2 cut(s) | 1560, 3183 |
| NdeI | CATATG | 4 cut(s) | 58, 2864, 2971, 3358 |
| NlaIV | GGNNCC | 3 cut(s) | 3193, 3382, 3840 |
| NmeAIII | GCCGAG | 1 cut(s) | 3737 |
| NmuCI | GTSAC | 4 cut(s) | 1372, 2775, 3252, 3966 |
| NsiI | ATGCAT | 2 cut(s) | 1476, 3958 |
| NspI | RCATGY | 4 cut(s) | 1344, 2608, 2881, 3810 |
| NspV | TTCGAA | 1 cut(s) | 1432 |
| PaeR7I | CTCGAG | 4 cut(s) | 244, 468, 2126, 3520 |
| PagI | TCATGA | 1 cut(s) | 2917 |
| PciI | ACATGT | 1 cut(s) | 2877 |
| PciSI | GCTCTTC | 3 cut(s) | 159, 402, 3840 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 1943, 3527 |
| PctI | GAATGC | 1 cut(s) | 3310 |
| PdmI | GAANNNNTTC | 7 cut(s) | 1097, 1506, 1862, 2691, 3308, 3663, 3708 |
| PfeI | GAWTC | 8 cut(s) | 225, 1287, 1537, 1863, 1948, 2087, 2789, 2830 |
| PflFI | GACNNNGTC | 1 cut(s) | 3643 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1412 |
| PinAI | ACCGGT | 1 cut(s) | 2956 |
| PleI | GAGTC | 5 cut(s) | 460, 520, 1898, 1957, 3512 |
| PmaCI | CACGTG | 1 cut(s) | 3962 |
| PmlI | CACGTG | 1 cut(s) | 3962 |
| PpsI | GAGTC | 5 cut(s) | 460, 520, 1898, 1957, 3512 |
| Ppu21I | YACGTR | 1 cut(s) | 3962 |
| PpuMI | RGGWCCY | 2 cut(s) | 3058, 3191 |
| PscI | ACATGT | 1 cut(s) | 2877 |
| PshBI | ATTAAT | 1 cut(s) | 3066 |
| PsiI | TTATAA | 1 cut(s) | 992 |
| Psp124BI | GAGCTC | 2 cut(s) | 1756, 2584 |
| Psp5II | RGGWCCY | 2 cut(s) | 3058, 3191 |
| Psp6I | CCWGG | 4 cut(s) | 998, 1531, 2491, 4013 |
| PspCI | CACGTG | 1 cut(s) | 3962 |
| PspEI | GGTNACC | 1 cut(s) | 1372 |
| PspGI | CCWGG | 4 cut(s) | 998, 1531, 2491, 4013 |
| PspN4I | GGNNCC | 3 cut(s) | 3193, 3382, 3840 |
| PspPI | GGNCC | 4 cut(s) | 2495, 2721, 3058, 3191 |
| PspPPI | RGGWCCY | 2 cut(s) | 3058, 3191 |
| PspXI | VCTCGAGB | 2 cut(s) | 468, 3520 |
| PstI | CTGCAG | 2 cut(s) | 2818, 3743 |
| PsuI | RGATCY | 3 cut(s) | 349, 823, 3838 |
| PsyI | GACNNNGTC | 1 cut(s) | 3643 |
| RsaI | GTAC | 5 cut(s) | 402, 565, 2691, 2937, 3686 |
| RsaNI | GTAC | 5 cut(s) | 401, 564, 2690, 2936, 3685 |
| RseI | CAYNNNNRTG | 8 cut(s) | 117, 585, 1565, 2700, 3588, 3944, 4043, 4053 |
| SacI | GAGCTC | 2 cut(s) | 1756, 2584 |
| SapI | GCTCTTC | 3 cut(s) | 159, 402, 3840 |
| Sau96I | GGNCC | 4 cut(s) | 2495, 2721, 3058, 3191 |
| ScaI | AGTACT | 2 cut(s) | 2691, 3686 |
| SchI | GAGTC | 5 cut(s) | 460, 521, 1898, 1957, 3512 |
| ScrFI | CCNGG | 5 cut(s) | 1000, 1533, 2493, 3195, 4015 |
| SduI | GDGCHC | 8 cut(s) | 1426, 1713, 1756, 2122, 2584, 2852, 3385, 3585 |
| SfaNI | GCATC | 7 cut(s) | 1461, 1591, 1651, 3289, 3336, 3965, 4133 |
| SfcI | CTRYAG | 5 cut(s) | 648, 1449, 2193, 2814, 3739 |
| Sfr274I | CTCGAG | 4 cut(s) | 244, 468, 2126, 3520 |
| SfuI | TTCGAA | 1 cut(s) | 1432 |
| SinI | GGWCC | 4 cut(s) | 2495, 2721, 3058, 3191 |
| SlaI | CTCGAG | 4 cut(s) | 244, 468, 2126, 3520 |
| SmiMI | CAYNNNNRTG | 8 cut(s) | 117, 585, 1565, 2700, 3588, 3944, 4043, 4053 |
| SmlI | CTYRAG | 7 cut(s) | 244, 468, 1076, 1632, 1952, 2126, 3520 |
| SmoI | CTYRAG | 7 cut(s) | 244, 468, 1076, 1632, 1952, 2126, 3520 |
| SsiI | CCGC | 5 cut(s) | 561, 3047, 3278, 3593, 3770 |
| SspI | AATATT | 4 cut(s) | 1326, 2266, 2998, 3674 |
| SspMI | CTAG | 5 cut(s) | 128, 792, 2280, 2292, 3918 |
| SstI | GAGCTC | 2 cut(s) | 1756, 2584 |
| StyD4I | CCNGG | 5 cut(s) | 998, 1531, 2491, 3193, 4013 |
| StyI | CCWWGG | 2 cut(s) | 1560, 3183 |
| TaaI | ACNGT | 9 cut(s) | 803, 962, 2048, 2314, 2454, 2721, 3074, 3473, 3823 |
| TaiI | ACGT | 3 cut(s) | 66, 3612, 3964 |
| TaqII | GACCGA | 2 cut(s) | 147, 2512 |
| TatI | WGTACW | 3 cut(s) | 400, 2689, 3684 |
| TauI | GCSGC | 1 cut(s) | 3280 |
| TfiI | GAWTC | 8 cut(s) | 225, 1287, 1537, 1863, 1948, 2087, 2789, 2830 |
| TscAI | CASTG | 5 cut(s) | 2214, 2479, 3253, 3323, 3748 |
| TseFI | GTSAC | 4 cut(s) | 1372, 2775, 3252, 3966 |
| Tsp45I | GTSAC | 4 cut(s) | 1372, 2775, 3252, 3966 |
| TspGWI | ACGGA | 2 cut(s) | 2416, 4064 |
| TspRI | CASTG | 5 cut(s) | 2214, 2479, 3253, 3323, 3748 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3643 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1412 |
| Vha464I | CTTAAG | 1 cut(s) | 1076 |
| VneI | GTGCAC | 1 cut(s) | 2118 |
| VpaK11BI | GGWCC | 4 cut(s) | 2495, 2721, 3058, 3191 |
| VspI | ATTAAT | 1 cut(s) | 3066 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3855 |
| XbaI | TCTAGA | 2 cut(s) | 127, 791 |
| XceI | RCATGY | 4 cut(s) | 1344, 2608, 2881, 3810 |
| XhoI | CTCGAG | 4 cut(s) | 244, 468, 2126, 3520 |
| XmiI | GTMKAC | 1 cut(s) | 3388 |
| XmnI | GAANNNNTTC | 7 cut(s) | 1097, 1506, 1862, 2691, 3308, 3663, 3708 |
| XspI | CTAG | 5 cut(s) | 128, 792, 2280, 2292, 3918 |
| ZrmI | AGTACT | 2 cut(s) | 2691, 3686 |
| Zsp2I | ATGCAT | 2 cut(s) | 1476, 3958 |