TMV resistance protein N-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 3276 |
| AccB1I | GGYRCC | 2 cut(s) | 2808, 3315 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1465, 3088 |
| AccBSI | CCGCTC | 1 cut(s) | 680 |
| AccI | GTMKAC | 1 cut(s) | 760 |
| AccII | CGCG | 3 cut(s) | 446, 2036, 2117 |
| AciI | CCGC | 7 cut(s) | 625, 651, 680, 1483, 2036, 2812, 3188 |
| AclWI | GGATC | 6 cut(s) | 134, 320, 985, 2811, 3231, 3300 |
| AcuI | CTGAAG | 4 cut(s) | 1034, 1110, 2804, 3008 |
| AcyI | GRCGYC | 1 cut(s) | 3225 |
| AfaI | GTAC | 6 cut(s) | 339, 1161, 1822, 2959, 3015, 3074 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 846, 1465, 3088, 3193, 3652 |
| AflIII | ACRYGT | 1 cut(s) | 1546 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2887 |
| AhlI | ACTAGT | 1 cut(s) | 1262 |
| AjiI | CACGTC | 1 cut(s) | 1627 |
| AjnI | CCWGG | 6 cut(s) | 1504, 1843, 3049, 3118, 3239, 3351 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 546, 578, 2505, 2537 |
| Alw21I | GWGCWC | 2 cut(s) | 8, 17 |
| Alw26I | GTCTC | 2 cut(s) | 732, 1145 |
| AlwI | GGATC | 6 cut(s) | 134, 320, 985, 2811, 3231, 3300 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2868 |
| Ama87I | CYCGRG | 1 cut(s) | 3617 |
| AoxI | GGCC | 2 cut(s) | 2209, 3511 |
| ApeKI | GCWGC | 5 cut(s) | 185, 304, 583, 2862, 3542 |
| AseI | ATTAAT | 2 cut(s) | 375, 3210 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1070, 1098, 1298, 2793 |
| AspLEI | GCGC | 1 cut(s) | 2036 |
| AspS9I | GGNCC | 4 cut(s) | 1740, 2209, 3439, 3635 |
| AsuC2I | CCSGG | 1 cut(s) | 1487 |
| AsuHPI | GGTGA | 3 cut(s) | 12, 2535, 3071 |
| AvaI | CYCGRG | 1 cut(s) | 3617 |
| AvaII | GGWCC | 3 cut(s) | 1740, 3439, 3635 |
| BaeGI | GKGCMC | 1 cut(s) | 3318 |
| BanI | GGYRCC | 2 cut(s) | 2808, 3315 |
| BanII | GRGCYC | 1 cut(s) | 17 |
| BauI | CACGAG | 1 cut(s) | 1901 |
| BbsI | GAAGAC | 4 cut(s) | 1441, 2083, 2114, 2327 |
| Bbv12I | GWGCWC | 2 cut(s) | 8, 17 |
| BbvI | GCAGC | 5 cut(s) | 172, 291, 595, 2874, 3554 |
| BccI | CCATC | 5 cut(s) | 99, 414, 1265, 2488, 3136 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 1358, 1392, 1882, 1916, 2095, 2129 |
| BciT130I | CCWGG | 6 cut(s) | 1506, 1845, 3051, 3120, 3241, 3353 |
| BciVI | GTATCC | 1 cut(s) | 61 |
| BclI | TGATCA | 2 cut(s) | 1359, 3322 |
| BcnI | CCSGG | 1 cut(s) | 1487 |
| BcoDI | GTCTC | 2 cut(s) | 732, 1145 |
| BcuI | ACTAGT | 1 cut(s) | 1262 |
| BfmI | CTRYAG | 2 cut(s) | 1439, 3105 |
| BfuI | GTATCC | 1 cut(s) | 61 |
| BglII | AGATCT | 4 cut(s) | 425, 1186, 1409, 2110 |
| BisI | GCNGC | 6 cut(s) | 186, 305, 584, 2812, 2863, 3543 |
| BlsI | GCNGC | 6 cut(s) | 187, 306, 585, 2813, 2864, 3544 |
| BmcAI | AGTACT | 1 cut(s) | 1161 |
| Bme1390I | CCNGG | 7 cut(s) | 1487, 1506, 1845, 3051, 3120, 3241, 3353 |
| Bme18I | GGWCC | 3 cut(s) | 1740, 3439, 3635 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2887 |
| BmeT110I | CYCGRG | 1 cut(s) | 3617 |
| BmgBI | CACGTC | 1 cut(s) | 1627 |
| BmgT120I | GGNCC | 4 cut(s) | 1740, 2209, 3439, 3635 |
| BmiI | GGNNCC | 5 cut(s) | 835, 1688, 2810, 3317, 3440 |
| BmrFI | CCNGG | 7 cut(s) | 1487, 1506, 1845, 3051, 3120, 3241, 3353 |
| BmrI | ACTGGG | 1 cut(s) | 2685 |
| BmuI | ACTGGG | 1 cut(s) | 2685 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1995 |
| BpiI | GAAGAC | 4 cut(s) | 1441, 2083, 2114, 2327 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 680, 712, 682, 714 |
| BpmI | CTGGAG | 3 cut(s) | 156, 1632, 3072 |
| BpuEI | CTTGAG | 4 cut(s) | 559, 1124, 1817, 2329 |
| BpuMI | CCSGG | 1 cut(s) | 1487 |
| BsaBI | GATNNNNATC | 2 cut(s) | 424, 3146 |
| BsaHI | GRCGYC | 1 cut(s) | 3225 |
| BsaI | GGTCTC | 1 cut(s) | 1145 |
| BsaJI | CCNNGG | 3 cut(s) | 26, 1843, 3240 |
| BsaWI | WCCGGW | 1 cut(s) | 1984 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1605, 1635 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 846, 1465, 3088, 3193, 3652 |
| Bse1I | ACTGG | 5 cut(s) | 1570, 2691, 2848, 3284, 3568 |
| Bse3DI | GCAATG | 2 cut(s) | 2825, 2969 |
| Bse8I | GATNNNNATC | 2 cut(s) | 424, 3146 |
| BseBI | CCWGG | 6 cut(s) | 1506, 1845, 3051, 3120, 3241, 3353 |
| BseDI | CCNNGG | 3 cut(s) | 26, 1843, 3240 |
| BseJI | GATNNNNATC | 2 cut(s) | 424, 3146 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 846, 1465, 3088, 3193, 3652 |
| BseMI | GCAATG | 2 cut(s) | 2825, 2969 |
| BseMII | CTCAG | 2 cut(s) | 1596, 2751 |
| BseNI | ACTGG | 5 cut(s) | 1570, 2691, 2848, 3284, 3568 |
| BseRI | GAGGAG | 4 cut(s) | 15, 2030, 2216, 3482 |
| BseSI | GKGCMC | 1 cut(s) | 3318 |
| BseXI | GCAGC | 5 cut(s) | 172, 291, 595, 2874, 3554 |
| BsgI | GTGCAG | 2 cut(s) | 627, 3651 |
| Bsh1236I | CGCG | 3 cut(s) | 446, 2036, 2117 |
| BshFI | GGCC | 2 cut(s) | 2211, 3513 |
| BshNI | GGYRCC | 2 cut(s) | 2808, 3315 |
| BsiHKAI | GWGCWC | 2 cut(s) | 8, 17 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3617 |
| BsiSI | CCGG | 3 cut(s) | 1486, 1985, 2606 |
| BsiWI | CGTACG | 1 cut(s) | 3013 |
| BslFI | GGGAC | 2 cut(s) | 1826, 3282 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 846, 1465, 3088, 3193, 3652 |
| BsmAI | GTCTC | 2 cut(s) | 732, 1145 |
| BsmFI | GGGAC | 2 cut(s) | 1826, 3282 |
| BsmI | GAATGC | 7 cut(s) | 284, 1070, 1202, 1636, 2073, 2641, 3152 |
| BsnI | GGCC | 2 cut(s) | 2211, 3513 |
| Bso31I | GGTCTC | 1 cut(s) | 1145 |
| BsoBI | CYCGRG | 1 cut(s) | 3617 |
| Bsp1286I | GDGCHC | 3 cut(s) | 8, 17, 3318 |
| Bsp1407I | TGTACA | 1 cut(s) | 1820 |
| Bsp68I | TCGCGA | 1 cut(s) | 446 |
| BspACI | CCGC | 7 cut(s) | 625, 651, 680, 1483, 2036, 2812, 3188 |
| BspANI | GGCC | 2 cut(s) | 2211, 3513 |
| BspCNI | CTCAG | 2 cut(s) | 1597, 2752 |
| BspFNI | CGCG | 3 cut(s) | 446, 2036, 2117 |
| BspHI | TCATGA | 2 cut(s) | 379, 826 |
| BspLI | GGNNCC | 5 cut(s) | 835, 1688, 2810, 3317, 3440 |
| BspPI | GGATC | 6 cut(s) | 134, 320, 985, 2811, 3231, 3300 |
| BspQI | GCTCTTC | 1 cut(s) | 22 |
| BspT107I | GGYRCC | 2 cut(s) | 2808, 3315 |
| BspTNI | GGTCTC | 1 cut(s) | 1145 |
| BsrBI | CCGCTC | 1 cut(s) | 680 |
| BsrDI | GCAATG | 2 cut(s) | 2825, 2969 |
| BsrGI | TGTACA | 1 cut(s) | 1820 |
| BsrI | ACTGG | 5 cut(s) | 1570, 2691, 2848, 3284, 3568 |
| BssECI | CCNNGG | 3 cut(s) | 26, 1843, 3240 |
| BssNI | GRCGYC | 1 cut(s) | 3225 |
| BssSI | CACGAG | 1 cut(s) | 1901 |
| Bst2BI | CACGAG | 1 cut(s) | 1901 |
| Bst2UI | CCWGG | 6 cut(s) | 1506, 1845, 3051, 3120, 3241, 3353 |
| Bst6I | CTCTTC | 8 cut(s) | 22, 1032, 1053, 1177, 1219, 1281, 2223, 3573 |
| BstACI | GRCGYC | 1 cut(s) | 3225 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1453, 2868, 3213, 3566 |
| BstAUI | TGTACA | 1 cut(s) | 1820 |
| BstC8I | GCNNGC | 4 cut(s) | 1915, 2038, 2282, 2816 |
| BstDEI | CTNAG | 4 cut(s) | 1190, 1605, 1882, 2760 |
| BstEII | GGTNACC | 1 cut(s) | 1082 |
| BstFNI | CGCG | 3 cut(s) | 446, 2036, 2117 |
| BstHHI | GCGC | 1 cut(s) | 2036 |
| BstMAI | GTCTC | 2 cut(s) | 732, 1145 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 12, 182, 1453, 2277, 2868, 3213, 3566 |
| BstNI | CCWGG | 6 cut(s) | 1506, 1845, 3051, 3120, 3241, 3353 |
| BstNSI | RCATGY | 2 cut(s) | 1550, 2284 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1995 |
| BstPI | GGTNACC | 1 cut(s) | 1082 |
| BstSCI | CCNGG | 7 cut(s) | 1485, 1504, 1843, 3049, 3118, 3239, 3351 |
| BstSFI | CTRYAG | 2 cut(s) | 1439, 3105 |
| BstSLI | GKGCMC | 1 cut(s) | 3318 |
| BstUI | CGCG | 3 cut(s) | 446, 2036, 2117 |
| BstV1I | GCAGC | 5 cut(s) | 172, 291, 595, 2874, 3554 |
| BstV2I | GAAGAC | 4 cut(s) | 1441, 2083, 2114, 2327 |
| BstX2I | RGATCY | 5 cut(s) | 425, 1186, 1409, 2110, 3236 |
| BstYI | RGATCY | 5 cut(s) | 425, 1186, 1409, 2110, 3236 |
| BsuI | GTATCC | 1 cut(s) | 61 |
| BsuRI | GGCC | 2 cut(s) | 2211, 3513 |
| BtgZI | GCGATG | 1 cut(s) | 1383 |
| BtrI | CACGTC | 1 cut(s) | 1627 |
| BtsI | GCAGTG | 4 cut(s) | 99, 1924, 2350, 3555 |
| BtsIMutI | CAGTG | 8 cut(s) | 99, 1210, 1924, 2350, 2698, 3278, 3291, 3555 |
| BtuMI | TCGCGA | 1 cut(s) | 446 |
| Cac8I | GCNNGC | 4 cut(s) | 1915, 2038, 2282, 2816 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2868 |
| CciI | TCATGA | 2 cut(s) | 379, 826 |
| CfoI | GCGC | 1 cut(s) | 2036 |
| Cfr13I | GGNCC | 4 cut(s) | 1740, 2209, 3439, 3635 |
| CseI | GACGC | 1 cut(s) | 3233 |
| Csp6I | GTAC | 6 cut(s) | 338, 1160, 1821, 2958, 3014, 3073 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 576, 611 |
| CviQI | GTAC | 6 cut(s) | 338, 1160, 1821, 2958, 3014, 3073 |
| DdeI | CTNAG | 4 cut(s) | 1190, 1605, 1882, 2760 |
| DraI | TTTAAA | 5 cut(s) | 361, 435, 912, 1780, 3610 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3276 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2887 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3276 |
| Eam1104I | CTCTTC | 8 cut(s) | 22, 1032, 1053, 1177, 1219, 1281, 2223, 3573 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2887 |
| EarI | CTCTTC | 8 cut(s) | 22, 1032, 1053, 1177, 1219, 1281, 2223, 3573 |
| EciI | GGCGGA | 1 cut(s) | 1472 |
| Ecl136II | GAGCTC | 1 cut(s) | 15 |
| Eco147I | AGGCCT | 1 cut(s) | 3513 |
| Eco24I | GRGCYC | 1 cut(s) | 17 |
| Eco31I | GGTCTC | 1 cut(s) | 1145 |
| Eco32I | GATATC | 2 cut(s) | 3338, 3358 |
| Eco47I | GGWCC | 3 cut(s) | 1740, 3439, 3635 |
| Eco53kI | GAGCTC | 1 cut(s) | 15 |
| Eco57I | CTGAAG | 4 cut(s) | 1034, 1110, 2804, 3008 |
| Eco88I | CYCGRG | 1 cut(s) | 3617 |
| Eco91I | GGTNACC | 1 cut(s) | 1082 |
| EcoICRI | GAGCTC | 1 cut(s) | 15 |
| EcoO109I | RGGNCCY | 1 cut(s) | 3635 |
| EcoO65I | GGTNACC | 1 cut(s) | 1082 |
| EcoRI | GAATTC | 3 cut(s) | 270, 463, 1728 |
| EcoRII | CCWGG | 6 cut(s) | 1504, 1843, 3049, 3118, 3239, 3351 |
| EcoRV | GATATC | 2 cut(s) | 3338, 3358 |
| EcoT22I | ATGCAT | 2 cut(s) | 238, 284 |
| EcoT38I | GRGCYC | 1 cut(s) | 17 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1086, 1118 |
| FaqI | GGGAC | 2 cut(s) | 1826, 3282 |
| FauI | CCCGC | 3 cut(s) | 644, 2029, 3195 |
| FauNDI | CATATG | 1 cut(s) | 1429 |
| FbaI | TGATCA | 2 cut(s) | 1359, 3322 |
| FblI | GTMKAC | 1 cut(s) | 760 |
| Fnu4HI | GCNGC | 6 cut(s) | 186, 305, 584, 2812, 2863, 3543 |
| FriOI | GRGCYC | 1 cut(s) | 17 |
| Fsp4HI | GCNGC | 6 cut(s) | 186, 305, 584, 2812, 2863, 3543 |
| GlaI | GCGC | 1 cut(s) | 2035 |
| GluI | GCNGC | 6 cut(s) | 186, 305, 584, 2812, 2863, 3543 |
| GsuI | CTGGAG | 3 cut(s) | 156, 1632, 3072 |
| HaeIII | GGCC | 2 cut(s) | 2211, 3513 |
| HapII | CCGG | 3 cut(s) | 1486, 1985, 2606 |
| HgaI | GACGC | 1 cut(s) | 3233 |
| HhaI | GCGC | 1 cut(s) | 2036 |
| Hin1I | GRCGYC | 1 cut(s) | 3225 |
| Hin6I | GCGC | 1 cut(s) | 2034 |
| HinP1I | GCGC | 1 cut(s) | 2034 |
| HincII | GTYRAC | 4 cut(s) | 243, 2718, 2920, 3281 |
| HindII | GTYRAC | 4 cut(s) | 243, 2718, 2920, 3281 |
| HindIII | AAGCTT | 6 cut(s) | 366, 1970, 2183, 2396, 2444, 2816 |
| HpaI | GTTAAC | 2 cut(s) | 2718, 2920 |
| HpaII | CCGG | 3 cut(s) | 1486, 1985, 2606 |
| HphI | GGTGA | 3 cut(s) | 12, 2535, 3071 |
| Hpy166II | GTNNAC | 9 cut(s) | 243, 761, 895, 1624, 1724, 2718, 2920, 3129, 3281 |
| Hpy188I | TCNGA | 7 cut(s) | 820, 2154, 2562, 2683, 2771, 2823, 3292 |
| Hpy8I | GTNNAC | 9 cut(s) | 243, 761, 895, 1624, 1724, 2718, 2920, 3129, 3281 |
| HpyCH4IV | ACGT | 5 cut(s) | 245, 321, 536, 1626, 3016 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 12, 182, 1453, 2277, 2868, 3213, 3566 |
| HpyF3I | CTNAG | 4 cut(s) | 1190, 1605, 1882, 2760 |
| HpySE526I | ACGT | 5 cut(s) | 245, 321, 536, 1626, 3016 |
| Hsp92I | GRCGYC | 1 cut(s) | 3225 |
| HspAI | GCGC | 1 cut(s) | 2034 |
| Ksp22I | TGATCA | 2 cut(s) | 1359, 3322 |
| KspAI | GTTAAC | 2 cut(s) | 2718, 2920 |
| LguI | GCTCTTC | 1 cut(s) | 22 |
| LmnI | GCTCC | 5 cut(s) | 833, 1461, 2017, 3052, 3469 |
| Lsp1109I | GCAGC | 5 cut(s) | 172, 291, 595, 2874, 3554 |
| MaeII | ACGT | 5 cut(s) | 245, 321, 536, 1626, 3016 |
| MaeIII | GTNAC | 7 cut(s) | 860, 1082, 1232, 1345, 2541, 2666, 3641 |
| MbiI | CCGCTC | 1 cut(s) | 680 |
| MfeI | CAATTG | 2 cut(s) | 2274, 3383 |
| MflI | RGATCY | 5 cut(s) | 425, 1186, 1409, 2110, 3236 |
| MhlI | GDGCHC | 3 cut(s) | 8, 17, 3318 |
| MlyI | GAGTC | 5 cut(s) | 734, 1592, 1616, 3180, 3609 |
| MmeI | TCCRAC | 5 cut(s) | 440, 544, 1018, 2864, 3270 |
| Mph1103I | ATGCAT | 2 cut(s) | 238, 284 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1070, 1098, 1298, 2793 |
| MslI | CAYNNNNRTG | 2 cut(s) | 2028, 3525 |
| MspA1I | CMGCKG | 1 cut(s) | 1062 |
| MspI | CCGG | 3 cut(s) | 1486, 1985, 2606 |
| MspR9I | CCNGG | 7 cut(s) | 1487, 1506, 1845, 3051, 3120, 3241, 3353 |
| MunI | CAATTG | 2 cut(s) | 2274, 3383 |
| Mva1269I | GAATGC | 7 cut(s) | 284, 1070, 1202, 1636, 2073, 2641, 3152 |
| MvaI | CCWGG | 6 cut(s) | 1506, 1845, 3051, 3120, 3241, 3353 |
| MvnI | CGCG | 3 cut(s) | 446, 2036, 2117 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 12, 182, 1453, 2277, 2868, 3213, 3566 |
| NciI | CCSGG | 1 cut(s) | 1487 |
| NdeI | CATATG | 1 cut(s) | 1429 |
| NlaIV | GGNNCC | 5 cut(s) | 835, 1688, 2810, 3317, 3440 |
| NmuCI | GTSAC | 4 cut(s) | 860, 2541, 2666, 3641 |
| NruI | TCGCGA | 1 cut(s) | 446 |
| NsiI | ATGCAT | 2 cut(s) | 238, 284 |
| NspI | RCATGY | 2 cut(s) | 1550, 2284 |
| PaeI | GCATGC | 1 cut(s) | 2284 |
| PaeR7I | CTCGAG | 1 cut(s) | 3617 |
| PagI | TCATGA | 2 cut(s) | 379, 826 |
| PceI | AGGCCT | 1 cut(s) | 3513 |
| PciI | ACATGT | 1 cut(s) | 1546 |
| PciSI | GCTCTTC | 1 cut(s) | 22 |
| PctI | GAATGC | 7 cut(s) | 284, 1070, 1202, 1636, 2073, 2641, 3152 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1070, 1098, 1298, 2793 |
| Pfl23II | CGTACG | 1 cut(s) | 3013 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1465, 3088 |
| PfoI | TCCNGGA | 1 cut(s) | 3049 |
| PkrI | GCNGC | 6 cut(s) | 187, 306, 585, 2813, 2864, 3544 |
| PleI | GAGTC | 5 cut(s) | 734, 1592, 1615, 3179, 3609 |
| PpsI | GAGTC | 5 cut(s) | 734, 1592, 1615, 3179, 3609 |
| PpuMI | RGGWCCY | 1 cut(s) | 3635 |
| PscI | ACATGT | 1 cut(s) | 1546 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1995 |
| PshBI | ATTAAT | 2 cut(s) | 375, 3210 |
| Psp124BI | GAGCTC | 1 cut(s) | 17 |
| Psp5II | RGGWCCY | 1 cut(s) | 3635 |
| Psp6I | CCWGG | 6 cut(s) | 1504, 1843, 3049, 3118, 3239, 3351 |
| PspEI | GGTNACC | 1 cut(s) | 1082 |
| PspGI | CCWGG | 6 cut(s) | 1504, 1843, 3049, 3118, 3239, 3351 |
| PspLI | CGTACG | 1 cut(s) | 3013 |
| PspN4I | GGNNCC | 5 cut(s) | 835, 1688, 2810, 3317, 3440 |
| PspPI | GGNCC | 4 cut(s) | 1740, 2209, 3439, 3635 |
| PspPPI | RGGWCCY | 1 cut(s) | 3635 |
| PspXI | VCTCGAGB | 1 cut(s) | 3617 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2868 |
| PsuI | RGATCY | 5 cut(s) | 425, 1186, 1409, 2110, 3236 |
| PvuII | CAGCTG | 1 cut(s) | 1062 |
| RruI | TCGCGA | 1 cut(s) | 446 |
| RsaI | GTAC | 6 cut(s) | 339, 1161, 1822, 2959, 3015, 3074 |
| RsaNI | GTAC | 6 cut(s) | 338, 1160, 1821, 2958, 3014, 3073 |
| RseI | CAYNNNNRTG | 2 cut(s) | 2028, 3525 |
| SacI | GAGCTC | 1 cut(s) | 17 |
| SapI | GCTCTTC | 1 cut(s) | 22 |
| SatI | GCNGC | 6 cut(s) | 186, 305, 584, 2812, 2863, 3543 |
| Sau96I | GGNCC | 4 cut(s) | 1740, 2209, 3439, 3635 |
| ScaI | AGTACT | 1 cut(s) | 1161 |
| SchI | GAGTC | 5 cut(s) | 734, 1592, 1616, 3180, 3609 |
| ScrFI | CCNGG | 7 cut(s) | 1487, 1506, 1845, 3051, 3120, 3241, 3353 |
| SduI | GDGCHC | 3 cut(s) | 8, 17, 3318 |
| SfcI | CTRYAG | 2 cut(s) | 1439, 3105 |
| Sfr274I | CTCGAG | 1 cut(s) | 3617 |
| SinI | GGWCC | 3 cut(s) | 1740, 3439, 3635 |
| SlaI | CTCGAG | 1 cut(s) | 3617 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 2028, 3525 |
| SmlI | CTYRAG | 5 cut(s) | 574, 1103, 1796, 2308, 3617 |
| SmoI | CTYRAG | 5 cut(s) | 574, 1103, 1796, 2308, 3617 |
| SpeI | ACTAGT | 1 cut(s) | 1262 |
| SphI | GCATGC | 1 cut(s) | 2284 |
| SseBI | AGGCCT | 1 cut(s) | 3513 |
| SsiI | CCGC | 7 cut(s) | 625, 651, 680, 1483, 2036, 2812, 3188 |
| SspI | AATATT | 2 cut(s) | 1299, 2167 |
| SstI | GAGCTC | 1 cut(s) | 17 |
| StuI | AGGCCT | 1 cut(s) | 3513 |
| StyD4I | CCNGG | 7 cut(s) | 1485, 1504, 1843, 3049, 3118, 3239, 3351 |
| TaiI | ACGT | 5 cut(s) | 248, 324, 539, 1629, 3019 |
| TaqI | TCGA | 5 cut(s) | 73, 1342, 2508, 3334, 3618 |
| TaqII | GACCGA | 1 cut(s) | 3411 |
| TatI | WGTACW | 3 cut(s) | 1159, 1820, 2957 |
| TauI | GCSGC | 1 cut(s) | 2814 |
| TscAI | CASTG | 8 cut(s) | 106, 1210, 1924, 2350, 2698, 3278, 3291, 3562 |
| TseFI | GTSAC | 4 cut(s) | 860, 2541, 2666, 3641 |
| TseI | GCWGC | 5 cut(s) | 185, 304, 583, 2862, 3542 |
| Tsp45I | GTSAC | 4 cut(s) | 860, 2541, 2666, 3641 |
| TspGWI | ACGGA | 4 cut(s) | 733, 3001, 3246, 3431 |
| TspRI | CASTG | 8 cut(s) | 106, 1210, 1924, 2350, 2698, 3278, 3291, 3562 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1465, 3088 |
| VpaK11BI | GGWCC | 3 cut(s) | 1740, 3439, 3635 |
| VspI | ATTAAT | 2 cut(s) | 375, 3210 |
| XbaI | TCTAGA | 3 cut(s) | 1276, 1810, 2780 |
| XceI | RCATGY | 2 cut(s) | 1550, 2284 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 938, 2847 |
| XhoI | CTCGAG | 1 cut(s) | 3617 |
| XmiI | GTMKAC | 1 cut(s) | 760 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1070, 1098, 1298, 2793 |
| ZrmI | AGTACT | 1 cut(s) | 1161 |
| Zsp2I | ATGCAT | 2 cut(s) | 238, 284 |