TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 18 - 193 | 5.4e-53 | TIR domain |
| TIR_2 | PF13676 | 21 - 117 | 1.9e-13 | TIR domain |
| NB-ARC | PF00931 | 212 - 366 | 2.3e-21 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 435 - 504 | 1.1e-17 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 633 - 724 | 2.8e-07 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 663 - 772 | 3.6e-12 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 692 - 778 | 2.1e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_13 | PF23286 | 763 - 849 | 4.6e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 776 - 856 | 1.4e-08 | Leucine-rich repeat region |
| C-JID | PF20160 | 869 - 912 | 2.3e-07 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1142 |
| AarI | CACCTGC | 1 cut(s) | 1518 |
| AatII | GACGTC | 2 cut(s) | 642, 1560 |
| Acc36I | ACCTGC | 2 cut(s) | 1518, 1710 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1483 |
| AccBSI | CCGCTC | 1 cut(s) | 698 |
| AccI | GTMKAC | 1 cut(s) | 1629 |
| AccIII | TCCGGA | 1 cut(s) | 160 |
| AciI | CCGC | 5 cut(s) | 643, 669, 698, 1501, 2849 |
| AclWI | GGATC | 2 cut(s) | 152, 338 |
| AcsI | RAATTY | 8 cut(s) | 288, 481, 585, 722, 728, 1260, 2591, 2619 |
| AcuI | CTGAAG | 6 cut(s) | 477, 827, 1128, 1323, 1611, 1703 |
| AcyI | GRCGYC | 2 cut(s) | 639, 1557 |
| AfaI | GTAC | 6 cut(s) | 357, 1179, 1374, 2576, 2633, 2867 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1483, 2647 |
| AflIII | ACRYGT | 1 cut(s) | 1564 |
| AjiI | CACGTC | 1 cut(s) | 1639 |
| AjnI | CCWGG | 2 cut(s) | 2608, 2677 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 564, 596, 1104, 1136 |
| AleI | CACNNNNGTG | 1 cut(s) | 2643 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1398, 1430 |
| Alw21I | GWGCWC | 2 cut(s) | 8, 1207 |
| Alw26I | GTCTC | 3 cut(s) | 1515, 1824, 2882 |
| AlwI | GGATC | 2 cut(s) | 152, 338 |
| Aor13HI | TCCGGA | 1 cut(s) | 160 |
| ApeKI | GCWGC | 4 cut(s) | 203, 322, 941, 2671 |
| ApoI | RAATTY | 8 cut(s) | 288, 481, 585, 722, 728, 1260, 2591, 2619 |
| AseI | ATTAAT | 1 cut(s) | 2793 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1088, 1116, 1316, 1722 |
| AspLEI | GCGC | 2 cut(s) | 2199, 2412 |
| AspS9I | GGNCC | 1 cut(s) | 2722 |
| AsuHPI | GGTGA | 3 cut(s) | 92, 643, 2630 |
| AsuII | TTCGAA | 1 cut(s) | 485 |
| AvaII | GGWCC | 1 cut(s) | 2722 |
| BanII | GRGCYC | 1 cut(s) | 1207 |
| BbsI | GAAGAC | 7 cut(s) | 101, 1151, 1459, 1560, 2258, 2471, 2646 |
| Bbv12I | GWGCWC | 2 cut(s) | 8, 1207 |
| BbvI | GCAGC | 4 cut(s) | 190, 309, 953, 2658 |
| BccI | CCATC | 2 cut(s) | 1482, 1786 |
| BceAI | ACGGC | 1 cut(s) | 1918 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1376, 1410 |
| BciT130I | CCWGG | 2 cut(s) | 2610, 2679 |
| BciVI | GTATCC | 1 cut(s) | 1770 |
| BcoDI | GTCTC | 3 cut(s) | 1515, 1824, 2882 |
| BfaI | CTAG | 6 cut(s) | 578, 990, 1295, 1322, 1457, 2838 |
| BfmI | CTRYAG | 1 cut(s) | 2874 |
| BfuAI | ACCTGC | 2 cut(s) | 1518, 1710 |
| BfuI | GTATCC | 1 cut(s) | 1770 |
| BglII | AGATCT | 5 cut(s) | 443, 1427, 2089, 2302, 2515 |
| BisI | GCNGC | 4 cut(s) | 204, 323, 942, 2672 |
| BlsI | GCNGC | 4 cut(s) | 205, 324, 943, 2673 |
| BmcAI | AGTACT | 2 cut(s) | 1179, 1374 |
| Bme1390I | CCNGG | 2 cut(s) | 2610, 2679 |
| Bme18I | GGWCC | 1 cut(s) | 2722 |
| BmgBI | CACGTC | 1 cut(s) | 1639 |
| BmgT120I | GGNCC | 1 cut(s) | 2722 |
| BmiI | GGNNCC | 4 cut(s) | 853, 1700, 2723, 2917 |
| BmrFI | CCNGG | 2 cut(s) | 2610, 2679 |
| BmrI | ACTGGG | 2 cut(s) | 1190, 1247 |
| BmsI | GCATC | 7 cut(s) | 32, 263, 610, 1452, 2683, 2734, 2843 |
| BmuI | ACTGGG | 2 cut(s) | 1190, 1247 |
| BpiI | GAAGAC | 7 cut(s) | 101, 1151, 1459, 1560, 2258, 2471, 2646 |
| BplI | GAGNNNNNCTC | 8 cut(s) | 211, 243, 698, 730, 700, 732, 1879, 1911 |
| BpmI | CTGGAG | 1 cut(s) | 174 |
| Bpu10I | CCTNAGC | 1 cut(s) | 2911 |
| Bpu14I | TTCGAA | 1 cut(s) | 485 |
| BpuEI | CTTGAG | 4 cut(s) | 577, 1925, 2279, 2492 |
| BsaBI | GATNNNNATC | 2 cut(s) | 342, 2520 |
| BsaHI | GRCGYC | 2 cut(s) | 639, 1557 |
| BsaWI | WCCGGW | 1 cut(s) | 160 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1483, 2647 |
| Bse1I | ACTGG | 4 cut(s) | 605, 1185, 1242, 1588 |
| Bse3DI | GCAATG | 2 cut(s) | 1326, 2810 |
| Bse8I | GATNNNNATC | 2 cut(s) | 342, 2520 |
| BseAI | TCCGGA | 1 cut(s) | 160 |
| BseBI | CCWGG | 2 cut(s) | 2610, 2679 |
| BseJI | GATNNNNATC | 2 cut(s) | 342, 2520 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1483, 2647 |
| BseMI | GCAATG | 2 cut(s) | 1326, 2810 |
| BseMII | CTCAG | 3 cut(s) | 59, 1808, 1877 |
| BseNI | ACTGG | 4 cut(s) | 605, 1185, 1242, 1588 |
| BseRI | GAGGAG | 4 cut(s) | 1793, 2191, 2404, 2765 |
| BseXI | GCAGC | 4 cut(s) | 190, 309, 953, 2658 |
| BseYI | CCCAGC | 1 cut(s) | 1522 |
| BsgI | GTGCAG | 2 cut(s) | 452, 1552 |
| BsiHKAI | GWGCWC | 2 cut(s) | 8, 1207 |
| BsiSI | CCGG | 4 cut(s) | 161, 1081, 2129, 2555 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1483, 2647 |
| BsmAI | GTCTC | 3 cut(s) | 1515, 1824, 2882 |
| BsmI | GAATGC | 2 cut(s) | 302, 1088 |
| Bsp119I | TTCGAA | 1 cut(s) | 485 |
| Bsp1286I | GDGCHC | 2 cut(s) | 8, 1207 |
| Bsp13I | TCCGGA | 1 cut(s) | 160 |
| Bsp143I | GATC | 8 cut(s) | 157, 343, 443, 1357, 1427, 2089, 2302, 2515 |
| BspACI | CCGC | 5 cut(s) | 643, 669, 698, 1501, 2849 |
| BspCNI | CTCAG | 3 cut(s) | 60, 1807, 1878 |
| BspEI | TCCGGA | 1 cut(s) | 160 |
| BspHI | TCATGA | 1 cut(s) | 718 |
| BspLI | GGNNCC | 4 cut(s) | 853, 1700, 2723, 2917 |
| BspMI | ACCTGC | 2 cut(s) | 1518, 1710 |
| BspPI | GGATC | 2 cut(s) | 152, 338 |
| BspQI | GCTCTTC | 1 cut(s) | 1195 |
| BspT104I | TTCGAA | 1 cut(s) | 485 |
| BsrBI | CCGCTC | 1 cut(s) | 698 |
| BsrDI | GCAATG | 2 cut(s) | 1326, 2810 |
| BsrI | ACTGG | 4 cut(s) | 605, 1185, 1242, 1588 |
| BssMI | GATC | 8 cut(s) | 157, 343, 443, 1357, 1427, 2089, 2302, 2515 |
| BssNI | GRCGYC | 2 cut(s) | 639, 1557 |
| Bst2UI | CCWGG | 2 cut(s) | 2610, 2679 |
| Bst4CI | ACNGT | 8 cut(s) | 319, 563, 1223, 1292, 1382, 1441, 2579, 2665 |
| Bst6I | CTCTTC | 4 cut(s) | 1071, 1195, 1237, 1299 |
| BstACI | GRCGYC | 2 cut(s) | 639, 1557 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 200, 1471 |
| BstBI | TTCGAA | 1 cut(s) | 485 |
| BstC8I | GCNNGC | 2 cut(s) | 2213, 2426 |
| BstDEI | CTNAG | 6 cut(s) | 68, 1208, 1794, 1811, 1886, 2911 |
| BstEII | GGTNACC | 1 cut(s) | 1100 |
| BstHHI | GCGC | 2 cut(s) | 2199, 2412 |
| BstKTI | GATC | 8 cut(s) | 160, 346, 446, 1360, 1430, 2092, 2305, 2518 |
| BstMAI | GTCTC | 3 cut(s) | 1515, 1824, 2882 |
| BstMBI | GATC | 8 cut(s) | 157, 343, 443, 1357, 1427, 2089, 2302, 2515 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 200, 824, 1471, 2787 |
| BstNI | CCWGG | 2 cut(s) | 2610, 2679 |
| BstNSI | RCATGY | 4 cut(s) | 1335, 1568, 2215, 2428 |
| BstPI | GGTNACC | 1 cut(s) | 1100 |
| BstSCI | CCNGG | 2 cut(s) | 2608, 2677 |
| BstSFI | CTRYAG | 1 cut(s) | 2874 |
| BstV1I | GCAGC | 4 cut(s) | 190, 309, 953, 2658 |
| BstV2I | GAAGAC | 7 cut(s) | 101, 1151, 1459, 1560, 2258, 2471, 2646 |
| BstX2I | RGATCY | 5 cut(s) | 443, 1427, 2089, 2302, 2515 |
| BstYI | RGATCY | 5 cut(s) | 443, 1427, 2089, 2302, 2515 |
| BsuI | GTATCC | 1 cut(s) | 1770 |
| BtrI | CACGTC | 1 cut(s) | 1639 |
| BtsI | GCAGTG | 4 cut(s) | 117, 2068, 2281, 2494 |
| BtsIMutI | CAGTG | 6 cut(s) | 53, 117, 1228, 2068, 2281, 2494 |
| BveI | ACCTGC | 2 cut(s) | 1518, 1710 |
| Cac8I | GCNNGC | 2 cut(s) | 2213, 2426 |
| CciI | TCATGA | 1 cut(s) | 718 |
| CfoI | GCGC | 2 cut(s) | 2199, 2412 |
| Cfr13I | GGNCC | 1 cut(s) | 2722 |
| CseI | GACGC | 1 cut(s) | 2888 |
| Csp6I | GTAC | 6 cut(s) | 356, 1178, 1373, 2575, 2632, 2866 |
| CviQI | GTAC | 6 cut(s) | 356, 1178, 1373, 2575, 2632, 2866 |
| DdeI | CTNAG | 6 cut(s) | 68, 1208, 1794, 1811, 1886, 2911 |
| DpnI | GATC | 8 cut(s) | 159, 345, 445, 1359, 1429, 2091, 2304, 2517 |
| DpnII | GATC | 8 cut(s) | 157, 343, 443, 1357, 1427, 2089, 2302, 2515 |
| DraI | TTTAAA | 2 cut(s) | 379, 1924 |
| Eam1104I | CTCTTC | 4 cut(s) | 1071, 1195, 1237, 1299 |
| EarI | CTCTTC | 4 cut(s) | 1071, 1195, 1237, 1299 |
| EciI | GGCGGA | 1 cut(s) | 1490 |
| Ecl136II | GAGCTC | 1 cut(s) | 1205 |
| Eco24I | GRGCYC | 1 cut(s) | 1207 |
| Eco32I | GATATC | 1 cut(s) | 2854 |
| Eco47I | GGWCC | 1 cut(s) | 2722 |
| Eco53kI | GAGCTC | 1 cut(s) | 1205 |
| Eco57I | CTGAAG | 6 cut(s) | 477, 827, 1128, 1323, 1611, 1703 |
| Eco91I | GGTNACC | 1 cut(s) | 1100 |
| EcoICRI | GAGCTC | 1 cut(s) | 1205 |
| EcoO65I | GGTNACC | 1 cut(s) | 1100 |
| EcoRI | GAATTC | 2 cut(s) | 288, 481 |
| EcoRII | CCWGG | 2 cut(s) | 2608, 2677 |
| EcoRV | GATATC | 1 cut(s) | 2854 |
| EcoT22I | ATGCAT | 2 cut(s) | 256, 302 |
| EcoT38I | GRGCYC | 1 cut(s) | 1207 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1104, 1136 |
| FauI | CCCGC | 1 cut(s) | 662 |
| FauNDI | CATATG | 2 cut(s) | 2727, 2902 |
| FblI | GTMKAC | 1 cut(s) | 1629 |
| Fnu4HI | GCNGC | 4 cut(s) | 204, 323, 942, 2672 |
| FriOI | GRGCYC | 1 cut(s) | 1207 |
| Fsp4HI | GCNGC | 4 cut(s) | 204, 323, 942, 2672 |
| FspBI | CTAG | 6 cut(s) | 578, 990, 1295, 1322, 1457, 2838 |
| GlaI | GCGC | 2 cut(s) | 2198, 2411 |
| GluI | GCNGC | 4 cut(s) | 204, 323, 942, 2672 |
| GsaI | CCCAGC | 1 cut(s) | 1526 |
| GsuI | CTGGAG | 1 cut(s) | 174 |
| HapII | CCGG | 4 cut(s) | 161, 1081, 2129, 2555 |
| HgaI | GACGC | 1 cut(s) | 2888 |
| HhaI | GCGC | 2 cut(s) | 2199, 2412 |
| Hin1I | GRCGYC | 2 cut(s) | 639, 1557 |
| Hin6I | GCGC | 2 cut(s) | 2197, 2410 |
| HinP1I | GCGC | 2 cut(s) | 2197, 2410 |
| HincII | GTYRAC | 3 cut(s) | 261, 1909, 1984 |
| HindII | GTYRAC | 3 cut(s) | 261, 1909, 1984 |
| HindIII | AAGCTT | 6 cut(s) | 1813, 2114, 2162, 2327, 2375, 2540 |
| HpaII | CCGG | 4 cut(s) | 161, 1081, 2129, 2555 |
| HphI | GGTGA | 3 cut(s) | 92, 643, 2630 |
| Hpy166II | GTNNAC | 7 cut(s) | 261, 779, 913, 1630, 1736, 1909, 1984 |
| Hpy188I | TCNGA | 9 cut(s) | 69, 93, 352, 1303, 1647, 1797, 1845, 1887, 2761 |
| Hpy8I | GTNNAC | 7 cut(s) | 261, 779, 913, 1630, 1736, 1909, 1984 |
| Hpy99I | CGWCG | 1 cut(s) | 1292 |
| HpyCH4III | ACNGT | 8 cut(s) | 319, 563, 1223, 1292, 1382, 1441, 2579, 2665 |
| HpyCH4IV | ACGT | 4 cut(s) | 639, 877, 1557, 1638 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 200, 824, 1471, 2787 |
| HpyF3I | CTNAG | 6 cut(s) | 68, 1208, 1794, 1811, 1886, 2911 |
| HpySE526I | ACGT | 4 cut(s) | 639, 877, 1557, 1638 |
| Hsp92I | GRCGYC | 2 cut(s) | 639, 1557 |
| HspAI | GCGC | 2 cut(s) | 2197, 2410 |
| Kpn2I | TCCGGA | 1 cut(s) | 160 |
| Kzo9I | GATC | 8 cut(s) | 157, 343, 443, 1357, 1427, 2089, 2302, 2515 |
| LguI | GCTCTTC | 1 cut(s) | 1195 |
| LmnI | GCTCC | 6 cut(s) | 851, 1479, 1806, 2204, 2417, 2752 |
| Lsp1109I | GCAGC | 4 cut(s) | 190, 309, 953, 2658 |
| LweI | GCATC | 7 cut(s) | 32, 263, 610, 1452, 2683, 2734, 2843 |
| MaeI | CTAG | 6 cut(s) | 578, 990, 1295, 1322, 1457, 2838 |
| MaeII | ACGT | 4 cut(s) | 639, 877, 1557, 1638 |
| MaeIII | GTNAC | 9 cut(s) | 80, 240, 878, 1100, 1250, 1283, 1363, 1639, 1889 |
| MalI | GATC | 8 cut(s) | 159, 345, 445, 1359, 1429, 2091, 2304, 2517 |
| MbiI | CCGCTC | 1 cut(s) | 698 |
| MboI | GATC | 8 cut(s) | 157, 343, 443, 1357, 1427, 2089, 2302, 2515 |
| MfeI | CAATTG | 1 cut(s) | 1992 |
| MflI | RGATCY | 5 cut(s) | 443, 1427, 2089, 2302, 2515 |
| MhlI | GDGCHC | 2 cut(s) | 8, 1207 |
| MlyI | GAGTC | 3 cut(s) | 1517, 1636, 1897 |
| MmeI | TCCRAC | 1 cut(s) | 562 |
| Mph1103I | ATGCAT | 2 cut(s) | 256, 302 |
| MroI | TCCGGA | 1 cut(s) | 160 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1088, 1116, 1316, 1722 |
| MslI | CAYNNNNRTG | 5 cut(s) | 236, 1610, 1637, 2643, 2905 |
| MspI | CCGG | 4 cut(s) | 161, 1081, 2129, 2555 |
| MspR9I | CCNGG | 2 cut(s) | 2610, 2679 |
| MunI | CAATTG | 1 cut(s) | 1992 |
| Mva1269I | GAATGC | 2 cut(s) | 302, 1088 |
| MvaI | CCWGG | 2 cut(s) | 2610, 2679 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 200, 824, 1471, 2787 |
| NdeI | CATATG | 2 cut(s) | 2727, 2902 |
| NdeII | GATC | 8 cut(s) | 157, 343, 443, 1357, 1427, 2089, 2302, 2515 |
| NlaIV | GGNNCC | 4 cut(s) | 853, 1700, 2723, 2917 |
| NmuCI | GTSAC | 5 cut(s) | 80, 240, 878, 1639, 1889 |
| NsiI | ATGCAT | 2 cut(s) | 256, 302 |
| NspI | RCATGY | 4 cut(s) | 1335, 1568, 2215, 2428 |
| NspV | TTCGAA | 1 cut(s) | 485 |
| OliI | CACNNNNGTG | 1 cut(s) | 2643 |
| PaeI | GCATGC | 2 cut(s) | 2215, 2428 |
| PagI | TCATGA | 1 cut(s) | 718 |
| PaqCI | CACCTGC | 1 cut(s) | 1518 |
| PciI | ACATGT | 1 cut(s) | 1564 |
| PciSI | GCTCTTC | 1 cut(s) | 1195 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1760 |
| PctI | GAATGC | 2 cut(s) | 302, 1088 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1088, 1116, 1316, 1722 |
| PfeI | GAWTC | 9 cut(s) | 138, 215, 500, 711, 1061, 1298, 1616, 1741, 2041 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1483 |
| PfoI | TCCNGGA | 1 cut(s) | 2608 |
| PkrI | GCNGC | 4 cut(s) | 205, 324, 943, 2673 |
| PleI | GAGTC | 3 cut(s) | 1516, 1636, 1896 |
| PpsI | GAGTC | 3 cut(s) | 1516, 1636, 1896 |
| PscI | ACATGT | 1 cut(s) | 1564 |
| PshBI | ATTAAT | 1 cut(s) | 2793 |
| PsiI | TTATAA | 1 cut(s) | 1142 |
| Psp124BI | GAGCTC | 1 cut(s) | 1207 |
| Psp6I | CCWGG | 2 cut(s) | 2608, 2677 |
| PspEI | GGTNACC | 1 cut(s) | 1100 |
| PspFI | CCCAGC | 1 cut(s) | 1522 |
| PspGI | CCWGG | 2 cut(s) | 2608, 2677 |
| PspN4I | GGNNCC | 4 cut(s) | 853, 1700, 2723, 2917 |
| PspPI | GGNCC | 1 cut(s) | 2722 |
| PsuI | RGATCY | 5 cut(s) | 443, 1427, 2089, 2302, 2515 |
| RsaI | GTAC | 6 cut(s) | 357, 1179, 1374, 2576, 2633, 2867 |
| RsaNI | GTAC | 6 cut(s) | 356, 1178, 1373, 2575, 2632, 2866 |
| RseI | CAYNNNNRTG | 5 cut(s) | 236, 1610, 1637, 2643, 2905 |
| SacI | GAGCTC | 1 cut(s) | 1207 |
| SapI | GCTCTTC | 1 cut(s) | 1195 |
| SatI | GCNGC | 4 cut(s) | 204, 323, 942, 2672 |
| Sau3AI | GATC | 8 cut(s) | 157, 343, 443, 1357, 1427, 2089, 2302, 2515 |
| Sau96I | GGNCC | 1 cut(s) | 2722 |
| ScaI | AGTACT | 2 cut(s) | 1179, 1374 |
| SchI | GAGTC | 3 cut(s) | 1517, 1636, 1897 |
| ScrFI | CCNGG | 2 cut(s) | 2610, 2679 |
| SduI | GDGCHC | 2 cut(s) | 8, 1207 |
| SfaNI | GCATC | 7 cut(s) | 32, 263, 610, 1452, 2683, 2734, 2843 |
| SfcI | CTRYAG | 1 cut(s) | 2874 |
| SfuI | TTCGAA | 1 cut(s) | 485 |
| SinI | GGWCC | 1 cut(s) | 2722 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 236, 1610, 1637, 2643, 2905 |
| SmlI | CTYRAG | 4 cut(s) | 592, 1940, 2258, 2471 |
| SmoI | CTYRAG | 4 cut(s) | 592, 1940, 2258, 2471 |
| SphI | GCATGC | 2 cut(s) | 2215, 2428 |
| SsiI | CCGC | 5 cut(s) | 643, 669, 698, 1501, 2849 |
| SspI | AATATT | 5 cut(s) | 935, 1317, 2098, 2311, 2785 |
| SspMI | CTAG | 6 cut(s) | 578, 990, 1295, 1322, 1457, 2838 |
| SstI | GAGCTC | 1 cut(s) | 1207 |
| StyD4I | CCNGG | 2 cut(s) | 2608, 2677 |
| TaaI | ACNGT | 8 cut(s) | 319, 563, 1223, 1292, 1382, 1441, 2579, 2665 |
| TaiI | ACGT | 4 cut(s) | 642, 880, 1560, 1641 |
| TaqI | TCGA | 7 cut(s) | 210, 218, 485, 1041, 1360, 1806, 2657 |
| TatI | WGTACW | 2 cut(s) | 1177, 1372 |
| TfiI | GAWTC | 9 cut(s) | 138, 215, 500, 711, 1061, 1298, 1616, 1741, 2041 |
| TscAI | CASTG | 6 cut(s) | 53, 124, 1228, 2068, 2281, 2494 |
| TseFI | GTSAC | 5 cut(s) | 80, 240, 878, 1639, 1889 |
| TseI | GCWGC | 4 cut(s) | 203, 322, 941, 2671 |
| Tsp45I | GTSAC | 5 cut(s) | 80, 240, 878, 1639, 1889 |
| TspGWI | ACGGA | 5 cut(s) | 336, 751, 1464, 1752, 1753 |
| TspRI | CASTG | 6 cut(s) | 53, 124, 1228, 2068, 2281, 2494 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1483 |
| VpaK11BI | GGWCC | 1 cut(s) | 2722 |
| VspI | ATTAAT | 1 cut(s) | 2793 |
| XapI | RAATTY | 8 cut(s) | 288, 481, 585, 722, 728, 1260, 2591, 2619 |
| XbaI | TCTAGA | 1 cut(s) | 1294 |
| XceI | RCATGY | 4 cut(s) | 1335, 1568, 2215, 2428 |
| XmiI | GTMKAC | 1 cut(s) | 1629 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1088, 1116, 1316, 1722 |
| XspI | CTAG | 6 cut(s) | 578, 990, 1295, 1322, 1457, 2838 |
| ZraI | GACGTC | 2 cut(s) | 640, 1558 |
| ZrmI | AGTACT | 2 cut(s) | 1179, 1374 |
| Zsp2I | ATGCAT | 2 cut(s) | 256, 302 |