TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 18 - 198 | 5.7e-52 | TIR domain |
| TIR_2 | PF13676 | 21 - 117 | 2e-15 | TIR domain |
| NB-ARC | PF00931 | 201 - 370 | 1.7e-24 | NB-ARC domain |
| ATPase_2 | PF01637 | 202 - 315 | 2.4e-06 | ATPase domain predominantly from Archaea |
| NACHT | PF05729 | 222 - 366 | 1.4e-06 | NACHT domain |
| LRR_14 | PF23598 | 747 - 819 | 1.5e-06 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1195 |
| AatII | GACGTC | 1 cut(s) | 2267 |
| AccB1I | GGYRCC | 1 cut(s) | 3307 |
| AccBSI | CCGCTC | 3 cut(s) | 2164, 2912, 3658 |
| AccI | GTMKAC | 4 cut(s) | 1015, 1360, 1954, 3610 |
| AccIII | TCCGGA | 2 cut(s) | 190, 3432 |
| AclWI | GGATC | 2 cut(s) | 933, 2513 |
| AcoI | YGGCCR | 8 cut(s) | 2165, 2842, 3126, 3322, 3354, 3395, 3420, 3544 |
| AcuI | CTGAAG | 4 cut(s) | 402, 1595, 1925, 2609 |
| AcvI | CACGTG | 2 cut(s) | 264, 2848 |
| AcyI | GRCGYC | 2 cut(s) | 2264, 3308 |
| AdeI | CACNNNGTG | 1 cut(s) | 267 |
| AfaI | GTAC | 6 cut(s) | 13, 1398, 1867, 2497, 2545, 2637 |
| AflII | CTTAAG | 2 cut(s) | 1184, 2335 |
| AflIII | ACRYGT | 3 cut(s) | 60, 2828, 2847 |
| AgeI | ACCGGT | 2 cut(s) | 32, 3373 |
| AhlI | ACTAGT | 1 cut(s) | 1018 |
| AjiI | CACGTC | 2 cut(s) | 61, 1388 |
| AjnI | CCWGG | 4 cut(s) | 218, 1420, 2641, 2809 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 238, 270, 393, 425 |
| Alw21I | GWGCWC | 3 cut(s) | 198, 1140, 3032 |
| Alw26I | GTCTC | 5 cut(s) | 352, 1903, 1979, 2679, 3636 |
| Alw44I | GTGCAC | 1 cut(s) | 3028 |
| AlwI | GGATC | 2 cut(s) | 933, 2513 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 811 |
| Ama87I | CYCGRG | 1 cut(s) | 1841 |
| Aor13HI | TCCGGA | 2 cut(s) | 190, 3432 |
| ApaLI | GTGCAC | 1 cut(s) | 3028 |
| ApeKI | GCWGC | 2 cut(s) | 2004, 2762 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1902, 1934 |
| AsiGI | ACCGGT | 2 cut(s) | 32, 3373 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 98 |
| AspLEI | GCGC | 2 cut(s) | 2755, 3310 |
| AspS9I | GGNCC | 4 cut(s) | 315, 1613, 2858, 3023 |
| AsuC2I | CCSGG | 2 cut(s) | 91, 3299 |
| AsuHPI | GGTGA | 9 cut(s) | 1462, 1730, 2207, 2362, 2879, 3307, 3363, 3388, 3594 |
| AvaI | CYCGRG | 1 cut(s) | 1841 |
| AvaII | GGWCC | 3 cut(s) | 315, 2858, 3023 |
| BaeGI | GKGCMC | 1 cut(s) | 3032 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2696, 2729 |
| BalI | TGGCCA | 2 cut(s) | 2844, 3128 |
| BanI | GGYRCC | 1 cut(s) | 3307 |
| BanII | GRGCYC | 3 cut(s) | 198, 1140, 3304 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1568, 1600 |
| BauI | CACGAG | 1 cut(s) | 3203 |
| BbrPI | CACGTG | 2 cut(s) | 264, 2848 |
| BbsI | GAAGAC | 6 cut(s) | 90, 1163, 1616, 2247, 3284, 3678 |
| Bbv12I | GWGCWC | 3 cut(s) | 198, 1140, 3032 |
| BbvI | GCAGC | 2 cut(s) | 1991, 2774 |
| BceAI | ACGGC | 5 cut(s) | 1415, 2768, 3068, 3410, 3600 |
| BciT130I | CCWGG | 4 cut(s) | 220, 1422, 2643, 2811 |
| BciVI | GTATCC | 2 cut(s) | 592, 1671 |
| BclI | TGATCA | 1 cut(s) | 727 |
| BcnI | CCSGG | 2 cut(s) | 91, 3299 |
| BcoDI | GTCTC | 5 cut(s) | 352, 1903, 1979, 2679, 3636 |
| BcuI | ACTAGT | 1 cut(s) | 1018 |
| BfaI | CTAG | 7 cut(s) | 555, 702, 788, 908, 1002, 1019, 1143 |
| BfmI | CTRYAG | 2 cut(s) | 2983, 3611 |
| BfoI | RGCGCY | 1 cut(s) | 3311 |
| BfrI | CTTAAG | 2 cut(s) | 1184, 2335 |
| BfuI | GTATCC | 2 cut(s) | 592, 1671 |
| BglII | AGATCT | 1 cut(s) | 720 |
| Bme1390I | CCNGG | 6 cut(s) | 91, 220, 1422, 2643, 2811, 3299 |
| Bme18I | GGWCC | 3 cut(s) | 315, 2858, 3023 |
| BmeT110I | CYCGRG | 1 cut(s) | 1841 |
| BmgBI | CACGTC | 2 cut(s) | 61, 1388 |
| BmgT120I | GGNCC | 4 cut(s) | 315, 1613, 2858, 3023 |
| BmiI | GGNNCC | 6 cut(s) | 316, 574, 3024, 3210, 3303, 3309 |
| BmrFI | CCNGG | 6 cut(s) | 91, 220, 1422, 2643, 2811, 3299 |
| BmsI | GCATC | 8 cut(s) | 436, 559, 1213, 2988, 3047, 3096, 3421, 3576 |
| BpiI | GAAGAC | 6 cut(s) | 90, 1163, 1616, 2247, 3284, 3678 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 185, 217, 707, 739, 1591, 1623 |
| BpmI | CTGGAG | 2 cut(s) | 629, 1672 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1177 |
| BpuEI | CTTGAG | 8 cut(s) | 1064, 1618, 1657, 2003, 2459, 2621, 3018, 3239 |
| BpuMI | CCSGG | 2 cut(s) | 91, 3299 |
| BsaAI | YACGTR | 4 cut(s) | 264, 2829, 2848, 3475 |
| BsaBI | GATNNNNATC | 2 cut(s) | 924, 1542 |
| BsaHI | GRCGYC | 2 cut(s) | 2264, 3308 |
| BsaJI | CCNNGG | 4 cut(s) | 76, 781, 948, 3501 |
| BsaWI | WCCGGW | 8 cut(s) | 32, 190, 1693, 3366, 3373, 3380, 3415, 3432 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 172, 202, 2676, 2706, 3539, 3569 |
| Bse118I | RCCGGY | 4 cut(s) | 32, 325, 3317, 3373 |
| Bse1I | ACTGG | 7 cut(s) | 945, 971, 1655, 2924, 3129, 3311, 3449 |
| Bse3DI | GCAATG | 3 cut(s) | 870, 1893, 1898 |
| Bse8I | GATNNNNATC | 2 cut(s) | 924, 1542 |
| BseAI | TCCGGA | 2 cut(s) | 190, 3432 |
| BseBI | CCWGG | 4 cut(s) | 220, 1422, 2643, 2811 |
| BseDI | CCNNGG | 4 cut(s) | 76, 781, 948, 3501 |
| BseJI | GATNNNNATC | 2 cut(s) | 924, 1542 |
| BseMI | GCAATG | 3 cut(s) | 870, 1893, 1898 |
| BseMII | CTCAG | 4 cut(s) | 216, 591, 2688, 2919 |
| BseNI | ACTGG | 7 cut(s) | 945, 971, 1655, 2924, 3129, 3311, 3449 |
| BseRI | GAGGAG | 3 cut(s) | 994, 3518, 3634 |
| BseSI | GKGCMC | 1 cut(s) | 3032 |
| BseX3I | CGGCCG | 3 cut(s) | 3322, 3354, 3395 |
| BseXI | GCAGC | 2 cut(s) | 1991, 2774 |
| BseYI | CCCAGC | 1 cut(s) | 682 |
| BsgI | GTGCAG | 1 cut(s) | 2554 |
| Bsh1285I | CGRYCG | 4 cut(s) | 231, 3325, 3357, 3398 |
| BshNI | GGYRCC | 1 cut(s) | 3307 |
| BshTI | ACCGGT | 2 cut(s) | 32, 3373 |
| BsiEI | CGRYCG | 4 cut(s) | 231, 3325, 3357, 3398 |
| BsiHKAI | GWGCWC | 3 cut(s) | 198, 1140, 3032 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1841 |
| BslFI | GGGAC | 6 cut(s) | 167, 328, 383, 799, 1398, 2089 |
| BsmAI | GTCTC | 5 cut(s) | 352, 1903, 1979, 2679, 3636 |
| BsmFI | GGGAC | 6 cut(s) | 167, 328, 383, 799, 1398, 2089 |
| BsmI | GAATGC | 3 cut(s) | 1830, 2459, 3327 |
| BsoBI | CYCGRG | 1 cut(s) | 1841 |
| Bsp1286I | GDGCHC | 4 cut(s) | 198, 1140, 3032, 3304 |
| Bsp13I | TCCGGA | 2 cut(s) | 190, 3432 |
| Bsp143I | GATC | 9 cut(s) | 228, 720, 727, 925, 2401, 2518, 2884, 3477, 3623 |
| Bsp19I | CCATGG | 1 cut(s) | 781 |
| BspCNI | CTCAG | 4 cut(s) | 215, 590, 2689, 2920 |
| BspEI | TCCGGA | 2 cut(s) | 190, 3432 |
| BspHI | TCATGA | 2 cut(s) | 1546, 2767 |
| BspLI | GGNNCC | 6 cut(s) | 316, 574, 3024, 3210, 3303, 3309 |
| BspPI | GGATC | 2 cut(s) | 933, 2513 |
| BspQI | GCTCTTC | 1 cut(s) | 1410 |
| BspT107I | GGYRCC | 1 cut(s) | 3307 |
| BspTI | CTTAAG | 2 cut(s) | 1184, 2335 |
| BsrBI | CCGCTC | 3 cut(s) | 2164, 2912, 3658 |
| BsrDI | GCAATG | 3 cut(s) | 870, 1893, 1898 |
| BsrFI | RCCGGY | 4 cut(s) | 32, 325, 3317, 3373 |
| BsrI | ACTGG | 7 cut(s) | 945, 971, 1655, 2924, 3129, 3311, 3449 |
| BssAI | RCCGGY | 4 cut(s) | 32, 325, 3317, 3373 |
| BssECI | CCNNGG | 4 cut(s) | 76, 781, 948, 3501 |
| BssMI | GATC | 9 cut(s) | 228, 720, 727, 925, 2401, 2518, 2884, 3477, 3623 |
| BssNAI | GTATAC | 2 cut(s) | 1016, 1361 |
| BssNI | GRCGYC | 2 cut(s) | 2264, 3308 |
| BssSI | CACGAG | 1 cut(s) | 3203 |
| BssT1I | CCWWGG | 2 cut(s) | 781, 948 |
| Bst1107I | GTATAC | 2 cut(s) | 1016, 1361 |
| Bst2BI | CACGAG | 1 cut(s) | 3203 |
| Bst2UI | CCWGG | 4 cut(s) | 220, 1422, 2643, 2811 |
| Bst4CI | ACNGT | 8 cut(s) | 282, 537, 2285, 2548, 2692, 2936, 3116, 3615 |
| Bst6I | CTCTTC | 3 cut(s) | 396, 1410, 1901 |
| BstACI | GRCGYC | 2 cut(s) | 2264, 3308 |
| BstAFI | CTTAAG | 2 cut(s) | 1184, 2335 |
| BstBAI | YACGTR | 4 cut(s) | 264, 2829, 2848, 3475 |
| BstC8I | GCNNGC | 6 cut(s) | 475, 531, 1165, 1605, 2383, 3410 |
| BstDEI | CTNAG | 9 cut(s) | 202, 577, 603, 876, 1177, 1712, 1787, 2697, 2928 |
| BstDSI | CCRYGG | 1 cut(s) | 781 |
| BstEII | GGTNACC | 2 cut(s) | 3369, 3376 |
| BstH2I | RGCGCY | 1 cut(s) | 3311 |
| BstHHI | GCGC | 2 cut(s) | 2755, 3310 |
| BstKTI | GATC | 9 cut(s) | 231, 723, 730, 928, 2404, 2521, 2887, 3480, 3626 |
| BstMAI | GTCTC | 5 cut(s) | 352, 1903, 1979, 2679, 3636 |
| BstMBI | GATC | 9 cut(s) | 228, 720, 727, 925, 2401, 2518, 2884, 3477, 3623 |
| BstMCI | CGRYCG | 4 cut(s) | 231, 3325, 3357, 3398 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 78, 470, 1155, 1164, 2750, 2759, 3299 |
| BstNI | CCWGG | 4 cut(s) | 220, 1422, 2643, 2811 |
| BstPI | GGTNACC | 2 cut(s) | 3369, 3376 |
| BstSCI | CCNGG | 6 cut(s) | 89, 218, 1420, 2641, 2809, 3297 |
| BstSFI | CTRYAG | 2 cut(s) | 2983, 3611 |
| BstSLI | GKGCMC | 1 cut(s) | 3032 |
| BstV1I | GCAGC | 2 cut(s) | 1991, 2774 |
| BstV2I | GAAGAC | 6 cut(s) | 90, 1163, 1616, 2247, 3284, 3678 |
| BstX2I | RGATCY | 2 cut(s) | 720, 2518 |
| BstYI | RGATCY | 2 cut(s) | 720, 2518 |
| BstZ17I | GTATAC | 2 cut(s) | 1016, 1361 |
| BstZI | CGGCCG | 3 cut(s) | 3322, 3354, 3395 |
| BsuI | GTATCC | 2 cut(s) | 592, 1671 |
| BtgI | CCRYGG | 1 cut(s) | 781 |
| BtgZI | GCGATG | 1 cut(s) | 1324 |
| BtrI | CACGTC | 2 cut(s) | 61, 1388 |
| BtsIMutI | CAGTG | 6 cut(s) | 102, 533, 1704, 2122, 3442, 3678 |
| Cac8I | GCNNGC | 6 cut(s) | 475, 531, 1165, 1605, 2383, 3410 |
| CaiI | CAGNNNCTG | 1 cut(s) | 811 |
| CciI | TCATGA | 2 cut(s) | 1546, 2767 |
| CciNI | GCGGCCGC | 1 cut(s) | 3322 |
| CfoI | GCGC | 2 cut(s) | 2755, 3310 |
| Cfr10I | RCCGGY | 4 cut(s) | 32, 325, 3317, 3373 |
| Cfr13I | GGNCC | 4 cut(s) | 315, 1613, 2858, 3023 |
| CseI | GACGC | 1 cut(s) | 1437 |
| Csp6I | GTAC | 6 cut(s) | 12, 1397, 1866, 2496, 2544, 2636 |
| CspAI | ACCGGT | 2 cut(s) | 32, 3373 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 518, 550, 553, 585 |
| CviQI | GTAC | 6 cut(s) | 12, 1397, 1866, 2496, 2544, 2636 |
| DdeI | CTNAG | 9 cut(s) | 202, 577, 603, 876, 1177, 1712, 1787, 2697, 2928 |
| DinI | GGCGCC | 1 cut(s) | 3309 |
| DpnI | GATC | 9 cut(s) | 230, 722, 729, 927, 2403, 2520, 2886, 3479, 3625 |
| DpnII | GATC | 9 cut(s) | 228, 720, 727, 925, 2401, 2518, 2884, 3477, 3623 |
| DraI | TTTAAA | 1 cut(s) | 3456 |
| DraIII | CACNNNGTG | 1 cut(s) | 267 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1195 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1195 |
| EaeI | YGGCCR | 8 cut(s) | 2165, 2842, 3126, 3322, 3354, 3395, 3420, 3544 |
| EagI | CGGCCG | 3 cut(s) | 3322, 3354, 3395 |
| Eam1104I | CTCTTC | 3 cut(s) | 396, 1410, 1901 |
| EarI | CTCTTC | 3 cut(s) | 396, 1410, 1901 |
| EciI | GGCGGA | 2 cut(s) | 3484, 3639 |
| Ecl136II | GAGCTC | 2 cut(s) | 196, 1138 |
| EclXI | CGGCCG | 3 cut(s) | 3322, 3354, 3395 |
| Eco130I | CCWWGG | 2 cut(s) | 781, 948 |
| Eco24I | GRGCYC | 3 cut(s) | 198, 1140, 3304 |
| Eco47I | GGWCC | 3 cut(s) | 315, 2858, 3023 |
| Eco52I | CGGCCG | 3 cut(s) | 3322, 3354, 3395 |
| Eco53kI | GAGCTC | 2 cut(s) | 196, 1138 |
| Eco57I | CTGAAG | 4 cut(s) | 402, 1595, 1925, 2609 |
| Eco72I | CACGTG | 2 cut(s) | 264, 2848 |
| Eco88I | CYCGRG | 1 cut(s) | 1841 |
| Eco91I | GGTNACC | 2 cut(s) | 3369, 3376 |
| EcoICRI | GAGCTC | 2 cut(s) | 196, 1138 |
| EcoO65I | GGTNACC | 2 cut(s) | 3369, 3376 |
| EcoRI | GAATTC | 3 cut(s) | 481, 2792, 3348 |
| EcoRII | CCWGG | 4 cut(s) | 218, 1420, 2641, 2809 |
| EcoT14I | CCWWGG | 2 cut(s) | 781, 948 |
| EcoT22I | ATGCAT | 2 cut(s) | 1228, 3111 |
| EcoT38I | GRGCYC | 3 cut(s) | 198, 1140, 3304 |
| EgeI | GGCGCC | 1 cut(s) | 3309 |
| EheI | GGCGCC | 1 cut(s) | 3309 |
| ErhI | CCWWGG | 2 cut(s) | 781, 948 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 888, 920 |
| FaqI | GGGAC | 6 cut(s) | 167, 328, 383, 799, 1398, 2089 |
| FauI | CCCGC | 1 cut(s) | 2100 |
| FauNDI | CATATG | 2 cut(s) | 1045, 1505 |
| FbaI | TGATCA | 1 cut(s) | 727 |
| FblI | GTMKAC | 4 cut(s) | 1015, 1360, 1954, 3610 |
| FriOI | GRGCYC | 3 cut(s) | 198, 1140, 3304 |
| FspBI | CTAG | 7 cut(s) | 555, 702, 788, 908, 1002, 1019, 1143 |
| GlaI | GCGC | 2 cut(s) | 2754, 3309 |
| GsaI | CCCAGC | 1 cut(s) | 686 |
| GsuI | CTGGAG | 2 cut(s) | 629, 1672 |
| HaeII | RGCGCY | 1 cut(s) | 3311 |
| HgaI | GACGC | 1 cut(s) | 1437 |
| HhaI | GCGC | 2 cut(s) | 2755, 3310 |
| Hin1I | GRCGYC | 2 cut(s) | 2264, 3308 |
| Hin6I | GCGC | 2 cut(s) | 2753, 3308 |
| HinP1I | GCGC | 2 cut(s) | 2753, 3308 |
| HincII | GTYRAC | 1 cut(s) | 343 |
| HindII | GTYRAC | 1 cut(s) | 343 |
| HindIII | AAGCTT | 2 cut(s) | 1577, 2060 |
| HphI | GGTGA | 9 cut(s) | 1462, 1730, 2207, 2362, 2879, 3307, 3363, 3388, 3594 |
| Hpy99I | CGWCG | 4 cut(s) | 62, 1268, 3396, 3586 |
| HpyCH4III | ACNGT | 8 cut(s) | 282, 537, 2285, 2548, 2692, 2936, 3116, 3615 |
| HpyCH4IV | ACGT | 9 cut(s) | 60, 263, 1012, 1387, 1455, 2264, 2828, 2847, 3474 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 78, 470, 1155, 1164, 2750, 2759, 3299 |
| HpyF3I | CTNAG | 9 cut(s) | 202, 577, 603, 876, 1177, 1712, 1787, 2697, 2928 |
| HpySE526I | ACGT | 9 cut(s) | 60, 263, 1012, 1387, 1455, 2264, 2828, 2847, 3474 |
| Hsp92I | GRCGYC | 2 cut(s) | 2264, 3308 |
| HspAI | GCGC | 2 cut(s) | 2753, 3308 |
| KasI | GGCGCC | 1 cut(s) | 3307 |
| Kpn2I | TCCGGA | 2 cut(s) | 190, 3432 |
| Ksp22I | TGATCA | 1 cut(s) | 727 |
| Kzo9I | GATC | 9 cut(s) | 228, 720, 727, 925, 2401, 2518, 2884, 3477, 3623 |
| LguI | GCTCTTC | 1 cut(s) | 1410 |
| LmnI | GCTCC | 5 cut(s) | 193, 540, 2131, 3214, 3307 |
| Lsp1109I | GCAGC | 2 cut(s) | 1991, 2774 |
| LweI | GCATC | 8 cut(s) | 436, 559, 1213, 2988, 3047, 3096, 3421, 3576 |
| MaeI | CTAG | 7 cut(s) | 555, 702, 788, 908, 1002, 1019, 1143 |
| MaeII | ACGT | 9 cut(s) | 60, 263, 1012, 1387, 1455, 2264, 2828, 2847, 3474 |
| MalI | GATC | 9 cut(s) | 230, 722, 729, 927, 2403, 2520, 2886, 3479, 3625 |
| MbiI | CCGCTC | 3 cut(s) | 2164, 2912, 3658 |
| MboI | GATC | 9 cut(s) | 228, 720, 727, 925, 2401, 2518, 2884, 3477, 3623 |
| MfeI | CAATTG | 2 cut(s) | 2444, 2491 |
| MflI | RGATCY | 2 cut(s) | 720, 2518 |
| MhlI | GDGCHC | 4 cut(s) | 198, 1140, 3032, 3304 |
| MlsI | TGGCCA | 2 cut(s) | 2844, 3128 |
| MluNI | TGGCCA | 2 cut(s) | 2844, 3128 |
| Mly113I | GGCGCC | 1 cut(s) | 3308 |
| MlyI | GAGTC | 6 cut(s) | 1299, 1415, 1905, 1960, 2218, 3336 |
| MmeI | TCCRAC | 3 cut(s) | 571, 3182, 3415 |
| Mox20I | TGGCCA | 2 cut(s) | 2844, 3128 |
| Mph1103I | ATGCAT | 2 cut(s) | 1228, 3111 |
| MroI | TCCGGA | 2 cut(s) | 190, 3432 |
| MroXI | GAANNNNTTC | 1 cut(s) | 98 |
| MscI | TGGCCA | 2 cut(s) | 2844, 3128 |
| MslI | CAYNNNNRTG | 2 cut(s) | 555, 2417 |
| Msp20I | TGGCCA | 2 cut(s) | 2844, 3128 |
| MspA1I | CMGCKG | 1 cut(s) | 1167 |
| MspCI | CTTAAG | 2 cut(s) | 1184, 2335 |
| MspR9I | CCNGG | 6 cut(s) | 91, 220, 1422, 2643, 2811, 3299 |
| MunI | CAATTG | 2 cut(s) | 2444, 2491 |
| Mva1269I | GAATGC | 3 cut(s) | 1830, 2459, 3327 |
| MvaI | CCWGG | 4 cut(s) | 220, 1422, 2643, 2811 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 78, 470, 1155, 1164, 2750, 2759, 3299 |
| NarI | GGCGCC | 1 cut(s) | 3308 |
| NciI | CCSGG | 2 cut(s) | 91, 3299 |
| NcoI | CCATGG | 1 cut(s) | 781 |
| NdeI | CATATG | 2 cut(s) | 1045, 1505 |
| NdeII | GATC | 9 cut(s) | 228, 720, 727, 925, 2401, 2518, 2884, 3477, 3623 |
| NlaIV | GGNNCC | 6 cut(s) | 316, 574, 3024, 3210, 3303, 3309 |
| NmeAIII | GCCGAG | 1 cut(s) | 3526 |
| NmuCI | GTSAC | 7 cut(s) | 1021, 1736, 2368, 3313, 3369, 3376, 3515 |
| NotI | GCGGCCGC | 1 cut(s) | 3322 |
| NsiI | ATGCAT | 2 cut(s) | 1228, 3111 |
| PaeR7I | CTCGAG | 1 cut(s) | 1841 |
| PagI | TCATGA | 2 cut(s) | 1546, 2767 |
| PciSI | GCTCTTC | 1 cut(s) | 1410 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3623 |
| PctI | GAATGC | 3 cut(s) | 1830, 2459, 3327 |
| PdmI | GAANNNNTTC | 1 cut(s) | 98 |
| PflFI | GACNNNGTC | 1 cut(s) | 1431 |
| PfoI | TCCNGGA | 1 cut(s) | 2641 |
| PinAI | ACCGGT | 2 cut(s) | 32, 3373 |
| Ple19I | CGATCG | 1 cut(s) | 231 |
| PleI | GAGTC | 6 cut(s) | 1299, 1414, 1905, 1959, 2217, 3336 |
| PluTI | GGCGCC | 1 cut(s) | 3311 |
| PmaCI | CACGTG | 2 cut(s) | 264, 2848 |
| PmlI | CACGTG | 2 cut(s) | 264, 2848 |
| PpsI | GAGTC | 6 cut(s) | 1299, 1414, 1905, 1959, 2217, 3336 |
| Ppu21I | YACGTR | 4 cut(s) | 264, 2829, 2848, 3475 |
| Psp124BI | GAGCTC | 2 cut(s) | 198, 1140 |
| Psp6I | CCWGG | 4 cut(s) | 218, 1420, 2641, 2809 |
| PspCI | CACGTG | 2 cut(s) | 264, 2848 |
| PspEI | GGTNACC | 2 cut(s) | 3369, 3376 |
| PspFI | CCCAGC | 1 cut(s) | 682 |
| PspGI | CCWGG | 4 cut(s) | 218, 1420, 2641, 2809 |
| PspN4I | GGNNCC | 6 cut(s) | 316, 574, 3024, 3210, 3303, 3309 |
| PspPI | GGNCC | 4 cut(s) | 315, 1613, 2858, 3023 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1916, 1948 |
| PstNI | CAGNNNCTG | 1 cut(s) | 811 |
| PsuI | RGATCY | 2 cut(s) | 720, 2518 |
| PsyI | GACNNNGTC | 1 cut(s) | 1431 |
| PvuI | CGATCG | 1 cut(s) | 231 |
| RsaI | GTAC | 6 cut(s) | 13, 1398, 1867, 2497, 2545, 2637 |
| RsaNI | GTAC | 6 cut(s) | 12, 1397, 1866, 2496, 2544, 2636 |
| RseI | CAYNNNNRTG | 2 cut(s) | 555, 2417 |
| SacI | GAGCTC | 2 cut(s) | 198, 1140 |
| SapI | GCTCTTC | 1 cut(s) | 1410 |
| Sau3AI | GATC | 9 cut(s) | 228, 720, 727, 925, 2401, 2518, 2884, 3477, 3623 |
| Sau96I | GGNCC | 4 cut(s) | 315, 1613, 2858, 3023 |
| SchI | GAGTC | 6 cut(s) | 1299, 1415, 1905, 1960, 2218, 3336 |
| ScrFI | CCNGG | 6 cut(s) | 91, 220, 1422, 2643, 2811, 3299 |
| SduI | GDGCHC | 4 cut(s) | 198, 1140, 3032, 3304 |
| SfaNI | GCATC | 8 cut(s) | 436, 559, 1213, 2988, 3047, 3096, 3421, 3576 |
| SfcI | CTRYAG | 2 cut(s) | 2983, 3611 |
| SfoI | GGCGCC | 1 cut(s) | 3309 |
| Sfr274I | CTCGAG | 1 cut(s) | 1841 |
| SgrAI | CRCCGGYG | 2 cut(s) | 3317, 3373 |
| SinI | GGWCC | 3 cut(s) | 315, 2858, 3023 |
| SlaI | CTCGAG | 1 cut(s) | 1841 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 555, 2417 |
| SpeI | ACTAGT | 1 cut(s) | 1018 |
| SspDI | GGCGCC | 1 cut(s) | 3307 |
| SspI | AATATT | 1 cut(s) | 1732 |
| SspMI | CTAG | 7 cut(s) | 555, 702, 788, 908, 1002, 1019, 1143 |
| SstI | GAGCTC | 2 cut(s) | 198, 1140 |
| StyD4I | CCNGG | 6 cut(s) | 89, 218, 1420, 2641, 2809, 3297 |
| StyI | CCWWGG | 2 cut(s) | 781, 948 |
| TaaI | ACNGT | 8 cut(s) | 282, 537, 2285, 2548, 2692, 2936, 3116, 3615 |
| TaiI | ACGT | 9 cut(s) | 63, 266, 1015, 1390, 1458, 2267, 2831, 2850, 3477 |
| TaqI | TCGA | 8 cut(s) | 210, 1308, 1497, 1782, 1842, 2978, 3041, 3617 |
| TatI | WGTACW | 2 cut(s) | 2495, 2635 |
| TauI | GCSGC | 8 cut(s) | 2167, 3324, 3327, 3359, 3500, 3580, 3655, 3658 |
| TscAI | CASTG | 6 cut(s) | 109, 540, 1711, 2122, 3449, 3678 |
| TseFI | GTSAC | 7 cut(s) | 1021, 1736, 2368, 3313, 3369, 3376, 3515 |
| TseI | GCWGC | 2 cut(s) | 2004, 2762 |
| Tsp45I | GTSAC | 7 cut(s) | 1021, 1736, 2368, 3313, 3369, 3376, 3515 |
| TspGWI | ACGGA | 6 cut(s) | 1267, 1281, 2282, 2700, 3015, 3632 |
| TspRI | CASTG | 6 cut(s) | 109, 540, 1711, 2122, 3449, 3678 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1431 |
| Vha464I | CTTAAG | 2 cut(s) | 1184, 2335 |
| VneI | GTGCAC | 1 cut(s) | 3028 |
| VpaK11BI | GGWCC | 3 cut(s) | 315, 2858, 3023 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2852 |
| XhoI | CTCGAG | 1 cut(s) | 1841 |
| XmiI | GTMKAC | 4 cut(s) | 1015, 1360, 1954, 3610 |
| XmnI | GAANNNNTTC | 1 cut(s) | 98 |
| XspI | CTAG | 7 cut(s) | 555, 702, 788, 908, 1002, 1019, 1143 |
| ZraI | GACGTC | 1 cut(s) | 2265 |
| Zsp2I | ATGCAT | 2 cut(s) | 1228, 3111 |