TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 31 - 101 | 5.4e-21 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 188 |
| AccI | GTMKAC | 1 cut(s) | 319 |
| AciI | CCGC | 1 cut(s) | 186 |
| AclI | AACGTT | 1 cut(s) | 446 |
| AclWI | GGATC | 1 cut(s) | 16 |
| AcsI | RAATTY | 5 cut(s) | 480, 563, 694, 817, 923 |
| AcuI | CTGAAG | 1 cut(s) | 827 |
| AfaI | GTAC | 3 cut(s) | 143, 653, 861 |
| AgsI | TTSAA | 8 cut(s) | 161, 392, 422, 436, 584, 667, 817, 878 |
| AjnI | CCWGG | 3 cut(s) | 4, 313, 502 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 638, 670, 993, 1025 |
| AluBI | AGCT | 4 cut(s) | 37, 604, 974, 986 |
| AluI | AGCT | 4 cut(s) | 37, 604, 974, 986 |
| Alw21I | GWGCWC | 1 cut(s) | 18 |
| Alw26I | GTCTC | 2 cut(s) | 53, 1029 |
| Alw44I | GTGCAC | 1 cut(s) | 14 |
| AlwI | GGATC | 1 cut(s) | 16 |
| AoxI | GGCC | 2 cut(s) | 505, 1012 |
| ApaLI | GTGCAC | 1 cut(s) | 14 |
| ApoI | RAATTY | 5 cut(s) | 480, 563, 694, 817, 923 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 503, 535 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 288 |
| AspS9I | GGNCC | 3 cut(s) | 506, 932, 1027 |
| AsuHPI | GGTGA | 1 cut(s) | 770 |
| AsuII | TTCGAA | 2 cut(s) | 365, 560 |
| AvaII | GGWCC | 2 cut(s) | 932, 1027 |
| BaeGI | GKGCMC | 1 cut(s) | 18 |
| BbsI | GAAGAC | 2 cut(s) | 839, 1049 |
| Bbv12I | GWGCWC | 1 cut(s) | 18 |
| BccI | CCATC | 5 cut(s) | 74, 583, 584, 790, 959 |
| BciT130I | CCWGG | 3 cut(s) | 6, 315, 504 |
| BciVI | GTATCC | 1 cut(s) | 564 |
| BclI | TGATCA | 1 cut(s) | 699 |
| BcoDI | GTCTC | 2 cut(s) | 53, 1029 |
| BfaI | CTAG | 2 cut(s) | 209, 522 |
| BfmI | CTRYAG | 1 cut(s) | 1070 |
| BfuI | GTATCC | 1 cut(s) | 564 |
| Bme1390I | CCNGG | 3 cut(s) | 6, 315, 504 |
| Bme18I | GGWCC | 2 cut(s) | 932, 1027 |
| BmgT120I | GGNCC | 3 cut(s) | 506, 932, 1027 |
| BmiI | GGNNCC | 1 cut(s) | 933 |
| BmrFI | CCNGG | 3 cut(s) | 6, 315, 504 |
| BmsI | GCATC | 2 cut(s) | 243, 887 |
| BpiI | GAAGAC | 2 cut(s) | 839, 1049 |
| BpmI | CTGGAG | 2 cut(s) | 486, 693 |
| Bpu14I | TTCGAA | 2 cut(s) | 365, 560 |
| BpuEI | CTTGAG | 4 cut(s) | 13, 50, 550, 755 |
| Bse1I | ACTGG | 3 cut(s) | 23, 724, 1029 |
| BseBI | CCWGG | 3 cut(s) | 6, 315, 504 |
| BseGI | GGATG | 2 cut(s) | 902, 970 |
| BseMII | CTCAG | 1 cut(s) | 591 |
| BseNI | ACTGG | 3 cut(s) | 23, 724, 1029 |
| BseSI | GKGCMC | 1 cut(s) | 18 |
| BshFI | GGCC | 2 cut(s) | 507, 1014 |
| BsiHKAI | GWGCWC | 1 cut(s) | 18 |
| BslFI | GGGAC | 3 cut(s) | 291, 945, 982 |
| BsmAI | GTCTC | 2 cut(s) | 53, 1029 |
| BsmBI | CGTCTC | 1 cut(s) | 53 |
| BsmFI | GGGAC | 3 cut(s) | 291, 945, 982 |
| BsmI | GAATGC | 1 cut(s) | 915 |
| BsnI | GGCC | 2 cut(s) | 507, 1014 |
| Bsp119I | TTCGAA | 2 cut(s) | 365, 560 |
| Bsp1286I | GDGCHC | 1 cut(s) | 18 |
| Bsp143I | GATC | 5 cut(s) | 8, 259, 628, 676, 699 |
| BspACI | CCGC | 1 cut(s) | 186 |
| BspANI | GGCC | 2 cut(s) | 507, 1014 |
| BspCNI | CTCAG | 1 cut(s) | 592 |
| BspLI | GGNNCC | 1 cut(s) | 933 |
| BspPI | GGATC | 1 cut(s) | 16 |
| BspQI | GCTCTTC | 1 cut(s) | 303 |
| BspT104I | TTCGAA | 2 cut(s) | 365, 560 |
| BsrBI | CCGCTC | 1 cut(s) | 188 |
| BsrI | ACTGG | 3 cut(s) | 23, 724, 1029 |
| BssMI | GATC | 5 cut(s) | 8, 259, 628, 676, 699 |
| Bst2UI | CCWGG | 3 cut(s) | 6, 315, 504 |
| Bst4CI | ACNGT | 2 cut(s) | 173, 830 |
| Bst6I | CTCTTC | 1 cut(s) | 303 |
| BstBI | TTCGAA | 2 cut(s) | 365, 560 |
| BstC8I | GCNNGC | 3 cut(s) | 124, 410, 430 |
| BstDEI | CTNAG | 3 cut(s) | 600, 680, 1031 |
| BstF5I | GGATG | 2 cut(s) | 902, 970 |
| BstKTI | GATC | 5 cut(s) | 11, 262, 631, 679, 702 |
| BstMAI | GTCTC | 2 cut(s) | 53, 1029 |
| BstMBI | GATC | 5 cut(s) | 8, 259, 628, 676, 699 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 610 |
| BstNI | CCWGG | 3 cut(s) | 6, 315, 504 |
| BstNSI | RCATGY | 1 cut(s) | 432 |
| BstSCI | CCNGG | 3 cut(s) | 4, 313, 502 |
| BstSFI | CTRYAG | 1 cut(s) | 1070 |
| BstSLI | GKGCMC | 1 cut(s) | 18 |
| BstV2I | GAAGAC | 2 cut(s) | 839, 1049 |
| BsuI | GTATCC | 1 cut(s) | 564 |
| BsuRI | GGCC | 2 cut(s) | 507, 1014 |
| BtsCI | GGATG | 2 cut(s) | 902, 970 |
| BtsIMutI | CAGTG | 5 cut(s) | 16, 18, 717, 957, 1022 |
| Cac8I | GCNNGC | 3 cut(s) | 124, 410, 430 |
| Cfr13I | GGNCC | 3 cut(s) | 506, 932, 1027 |
| CseI | GACGC | 2 cut(s) | 70, 602 |
| Csp6I | GTAC | 3 cut(s) | 142, 652, 860 |
| CviAII | CATG | 7 cut(s) | 94, 245, 257, 338, 356, 429, 760 |
| CviQI | GTAC | 3 cut(s) | 142, 652, 860 |
| DdeI | CTNAG | 3 cut(s) | 600, 680, 1031 |
| DpnI | GATC | 5 cut(s) | 10, 261, 630, 678, 701 |
| DpnII | GATC | 5 cut(s) | 8, 259, 628, 676, 699 |
| Eam1104I | CTCTTC | 1 cut(s) | 303 |
| EarI | CTCTTC | 1 cut(s) | 303 |
| Eco47I | GGWCC | 2 cut(s) | 932, 1027 |
| Eco57I | CTGAAG | 1 cut(s) | 827 |
| EcoRII | CCWGG | 3 cut(s) | 4, 313, 502 |
| EcoT22I | ATGCAT | 1 cut(s) | 258 |
| Esp3I | CGTCTC | 1 cut(s) | 53 |
| FaeI | CATG | 7 cut(s) | 97, 248, 260, 341, 359, 432, 763 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 335, 367 |
| FaqI | GGGAC | 3 cut(s) | 291, 945, 982 |
| FatI | CATG | 7 cut(s) | 93, 244, 256, 337, 355, 428, 759 |
| FauI | CCCGC | 1 cut(s) | 193 |
| FbaI | TGATCA | 1 cut(s) | 699 |
| FblI | GTMKAC | 1 cut(s) | 319 |
| FokI | GGATG | 2 cut(s) | 909, 977 |
| FspBI | CTAG | 2 cut(s) | 209, 522 |
| GsuI | CTGGAG | 2 cut(s) | 486, 693 |
| HaeIII | GGCC | 2 cut(s) | 507, 1014 |
| HgaI | GACGC | 2 cut(s) | 70, 602 |
| Hin1II | CATG | 7 cut(s) | 97, 248, 260, 341, 359, 432, 763 |
| HincII | GTYRAC | 1 cut(s) | 320 |
| HindII | GTYRAC | 1 cut(s) | 320 |
| HinfI | GANTC | 7 cut(s) | 299, 436, 706, 730, 775, 844, 869 |
| HphI | GGTGA | 1 cut(s) | 770 |
| Hpy166II | GTNNAC | 3 cut(s) | 16, 320, 416 |
| Hpy188I | TCNGA | 7 cut(s) | 264, 463, 492, 691, 729, 852, 1062 |
| Hpy8I | GTNNAC | 3 cut(s) | 16, 320, 416 |
| Hpy99I | CGWCG | 1 cut(s) | 324 |
| HpyAV | CCTTC | 3 cut(s) | 386, 567, 999 |
| HpyCH4III | ACNGT | 2 cut(s) | 173, 830 |
| HpyCH4IV | ACGT | 2 cut(s) | 322, 446 |
| HpyCH4V | TGCA | 5 cut(s) | 16, 256, 759, 791, 1041 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 610 |
| HpyF3I | CTNAG | 3 cut(s) | 600, 680, 1031 |
| HpySE526I | ACGT | 2 cut(s) | 322, 446 |
| Hsp92II | CATG | 7 cut(s) | 97, 248, 260, 341, 359, 432, 763 |
| Ksp22I | TGATCA | 1 cut(s) | 699 |
| Kzo9I | GATC | 5 cut(s) | 8, 259, 628, 676, 699 |
| LguI | GCTCTTC | 1 cut(s) | 303 |
| LmnI | GCTCC | 4 cut(s) | 42, 148, 480, 991 |
| LweI | GCATC | 2 cut(s) | 243, 887 |
| MaeI | CTAG | 2 cut(s) | 209, 522 |
| MaeII | ACGT | 2 cut(s) | 322, 446 |
| MaeIII | GTNAC | 2 cut(s) | 74, 659 |
| MalI | GATC | 5 cut(s) | 10, 261, 630, 678, 701 |
| MbiI | CCGCTC | 1 cut(s) | 188 |
| MboI | GATC | 5 cut(s) | 8, 259, 628, 676, 699 |
| MboII | GAAGA | 5 cut(s) | 320, 379, 820, 839, 1049 |
| MfeI | CAATTG | 1 cut(s) | 387 |
| MhlI | GDGCHC | 1 cut(s) | 18 |
| MluCI | AATT | 8 cut(s) | 156, 285, 387, 480, 563, 694, 817, 923 |
| MlyI | GAGTC | 2 cut(s) | 700, 853 |
| MnlI | CCTC | 3 cut(s) | 850, 973, 1025 |
| Mph1103I | ATGCAT | 1 cut(s) | 258 |
| MroXI | GAANNNNTTC | 1 cut(s) | 288 |
| MseI | TTAA | 2 cut(s) | 227, 750 |
| MslI | CAYNNNNRTG | 1 cut(s) | 135 |
| MspR9I | CCNGG | 3 cut(s) | 6, 315, 504 |
| MunI | CAATTG | 1 cut(s) | 387 |
| Mva1269I | GAATGC | 1 cut(s) | 915 |
| MvaI | CCWGG | 3 cut(s) | 6, 315, 504 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 610 |
| NdeII | GATC | 5 cut(s) | 8, 259, 628, 676, 699 |
| NlaIII | CATG | 7 cut(s) | 97, 248, 260, 341, 359, 432, 763 |
| NlaIV | GGNNCC | 1 cut(s) | 933 |
| NsiI | ATGCAT | 1 cut(s) | 258 |
| NspI | RCATGY | 1 cut(s) | 432 |
| NspV | TTCGAA | 2 cut(s) | 365, 560 |
| PaeI | GCATGC | 1 cut(s) | 432 |
| PciSI | GCTCTTC | 1 cut(s) | 303 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 325 |
| PctI | GAATGC | 1 cut(s) | 915 |
| PdmI | GAANNNNTTC | 1 cut(s) | 288 |
| PfeI | GAWTC | 5 cut(s) | 299, 436, 730, 775, 869 |
| PleI | GAGTC | 2 cut(s) | 700, 852 |
| PpsI | GAGTC | 2 cut(s) | 700, 852 |
| Psp1406I | AACGTT | 1 cut(s) | 446 |
| Psp6I | CCWGG | 3 cut(s) | 4, 313, 502 |
| PspGI | CCWGG | 3 cut(s) | 4, 313, 502 |
| PspN4I | GGNNCC | 1 cut(s) | 933 |
| PspPI | GGNCC | 3 cut(s) | 506, 932, 1027 |
| RsaI | GTAC | 3 cut(s) | 143, 653, 861 |
| RsaNI | GTAC | 3 cut(s) | 142, 652, 860 |
| RseI | CAYNNNNRTG | 1 cut(s) | 135 |
| SalI | GTCGAC | 1 cut(s) | 318 |
| SapI | GCTCTTC | 1 cut(s) | 303 |
| SaqAI | TTAA | 2 cut(s) | 227, 750 |
| Sau3AI | GATC | 5 cut(s) | 8, 259, 628, 676, 699 |
| Sau96I | GGNCC | 3 cut(s) | 506, 932, 1027 |
| SchI | GAGTC | 2 cut(s) | 700, 853 |
| ScrFI | CCNGG | 3 cut(s) | 6, 315, 504 |
| SduI | GDGCHC | 1 cut(s) | 18 |
| SetI | ASST | 8 cut(s) | 39, 325, 449, 606, 861, 976, 988, 1032 |
| SfaNI | GCATC | 2 cut(s) | 243, 887 |
| SfcI | CTRYAG | 1 cut(s) | 1070 |
| SfuI | TTCGAA | 2 cut(s) | 365, 560 |
| SinI | GGWCC | 2 cut(s) | 932, 1027 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 135 |
| SmlI | CTYRAG | 4 cut(s) | 28, 65, 529, 734 |
| SmoI | CTYRAG | 4 cut(s) | 28, 65, 529, 734 |
| SphI | GCATGC | 1 cut(s) | 432 |
| Sse9I | AATT | 8 cut(s) | 156, 285, 387, 480, 563, 694, 817, 923 |
| SsiI | CCGC | 1 cut(s) | 186 |
| SspI | AATATT | 1 cut(s) | 108 |
| SspMI | CTAG | 2 cut(s) | 209, 522 |
| StyD4I | CCNGG | 3 cut(s) | 4, 313, 502 |
| TaaI | ACNGT | 2 cut(s) | 173, 830 |
| TaiI | ACGT | 2 cut(s) | 325, 449 |
| TaqI | TCGA | 3 cut(s) | 319, 365, 560 |
| TasI | AATT | 8 cut(s) | 156, 285, 387, 480, 563, 694, 817, 923 |
| TatI | WGTACW | 1 cut(s) | 651 |
| TfiI | GAWTC | 5 cut(s) | 299, 436, 730, 775, 869 |
| Tru1I | TTAA | 2 cut(s) | 227, 750 |
| Tru9I | TTAA | 2 cut(s) | 227, 750 |
| TscAI | CASTG | 5 cut(s) | 18, 23, 724, 957, 1029 |
| TspDTI | ATGAA | 6 cut(s) | 119, 321, 344, 473, 776, 981 |
| TspRI | CASTG | 5 cut(s) | 18, 23, 724, 957, 1029 |
| VneI | GTGCAC | 1 cut(s) | 14 |
| VpaK11BI | GGWCC | 2 cut(s) | 932, 1027 |
| XapI | RAATTY | 5 cut(s) | 480, 563, 694, 817, 923 |
| XceI | RCATGY | 1 cut(s) | 432 |
| XmiI | GTMKAC | 1 cut(s) | 319 |
| XmnI | GAANNNNTTC | 1 cut(s) | 288 |
| XspI | CTAG | 2 cut(s) | 209, 522 |
| Zsp2I | ATGCAT | 1 cut(s) | 258 |