TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 10 - 187 | 2.8e-53 | TIR domain |
| TIR_2 | PF13676 | 13 - 116 | 1.8e-15 | TIR domain |
| WHD_ROQ1 | PF23282 | 534 - 604 | 2.2e-21 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 792 - 882 | 2.1e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 799 - 885 | 9.3e-10 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 882 - 929 | 3.8e-07 | Leucine-rich repeat region |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 2079 |
| AccB1I | GGYRCC | 1 cut(s) | 2079 |
| AccBSI | CCGCTC | 1 cut(s) | 425 |
| AccII | CGCG | 3 cut(s) | 381, 463, 1509 |
| AclWI | GGATC | 2 cut(s) | 377, 1489 |
| AcoI | YGGCCR | 4 cut(s) | 16, 82, 2631, 2806 |
| AcsI | RAATTY | 3 cut(s) | 1208, 2195, 2674 |
| AcuI | CTGAAG | 6 cut(s) | 156, 378, 1372, 1584, 2246, 2555 |
| AcvI | CACGTG | 1 cut(s) | 2023 |
| AdeI | CACNNNGTG | 1 cut(s) | 240 |
| AfaI | GTAC | 5 cut(s) | 408, 1269, 1415, 2081, 2287 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1552 |
| AflII | CTTAAG | 1 cut(s) | 2366 |
| AflIII | ACRYGT | 3 cut(s) | 1519, 1935, 2020 |
| AhlI | ACTAGT | 3 cut(s) | 253, 1406, 2288 |
| AjiI | CACGTC | 1 cut(s) | 1936 |
| AjnI | CCWGG | 2 cut(s) | 555, 1822 |
| AleI | CACNNNNGTG | 1 cut(s) | 1510 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1695, 1727 |
| Alw21I | GWGCWC | 3 cut(s) | 1507, 1729, 2642 |
| Alw26I | GTCTC | 7 cut(s) | 597, 1744, 1754, 1822, 1966, 2069, 2342 |
| Alw44I | GTGCAC | 1 cut(s) | 1503 |
| AlwI | GGATC | 2 cut(s) | 377, 1489 |
| Ama87I | CYCGRG | 1 cut(s) | 1757 |
| AoxI | GGCC | 5 cut(s) | 16, 82, 553, 2631, 2806 |
| ApaLI | GTGCAC | 1 cut(s) | 1503 |
| ApeKI | GCWGC | 1 cut(s) | 2424 |
| ApoI | RAATTY | 3 cut(s) | 1208, 2195, 2674 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1922, 1954 |
| AseI | ATTAAT | 2 cut(s) | 1436, 2256 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 568, 1284 |
| Asp718I | GGTACC | 1 cut(s) | 2079 |
| AspA2I | CCTAGG | 1 cut(s) | 605 |
| AspS9I | GGNCC | 3 cut(s) | 420, 1543, 2692 |
| AsuC2I | CCSGG | 1 cut(s) | 2635 |
| AsuHPI | GGTGA | 5 cut(s) | 902, 1274, 1734, 2012, 2477 |
| AvaI | CYCGRG | 1 cut(s) | 1757 |
| AvaII | GGWCC | 3 cut(s) | 420, 1543, 2692 |
| AvrII | CCTAGG | 1 cut(s) | 605 |
| BaeGI | GKGCMC | 1 cut(s) | 1507 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 398, 431 |
| BalI | TGGCCA | 1 cut(s) | 2808 |
| BanI | GGYRCC | 1 cut(s) | 2079 |
| BanII | GRGCYC | 1 cut(s) | 1729 |
| BbrPI | CACGTG | 1 cut(s) | 2023 |
| BbsI | GAAGAC | 2 cut(s) | 31, 2576 |
| Bbv12I | GWGCWC | 3 cut(s) | 1507, 1729, 2642 |
| BbvI | GCAGC | 1 cut(s) | 2411 |
| BceAI | ACGGC | 2 cut(s) | 3, 2546 |
| BciT130I | CCWGG | 2 cut(s) | 557, 1824 |
| BciVI | GTATCC | 1 cut(s) | 55 |
| BclI | TGATCA | 1 cut(s) | 525 |
| BcnI | CCSGG | 1 cut(s) | 2635 |
| BcoDI | GTCTC | 7 cut(s) | 597, 1744, 1754, 1822, 1966, 2069, 2342 |
| BcuI | ACTAGT | 3 cut(s) | 253, 1406, 2288 |
| BfmI | CTRYAG | 2 cut(s) | 1887, 2702 |
| BfrI | CTTAAG | 1 cut(s) | 2366 |
| BfuI | GTATCC | 1 cut(s) | 55 |
| BglII | AGATCT | 1 cut(s) | 72 |
| BisI | GCNGC | 1 cut(s) | 2425 |
| BlnI | CCTAGG | 1 cut(s) | 605 |
| BlpI | GCTNAGC | 1 cut(s) | 1860 |
| BlsI | GCNGC | 1 cut(s) | 2426 |
| Bme1390I | CCNGG | 3 cut(s) | 557, 1824, 2635 |
| Bme18I | GGWCC | 3 cut(s) | 420, 1543, 2692 |
| BmeT110I | CYCGRG | 1 cut(s) | 1757 |
| BmgBI | CACGTC | 1 cut(s) | 1936 |
| BmgT120I | GGNCC | 3 cut(s) | 420, 1543, 2692 |
| BmiI | GGNNCC | 5 cut(s) | 321, 1545, 1821, 2081, 2173 |
| BmrFI | CCNGG | 3 cut(s) | 557, 1824, 2635 |
| BmrI | ACTGGG | 1 cut(s) | 2212 |
| BmsI | GCATC | 4 cut(s) | 469, 1263, 1846, 2778 |
| BmuI | ACTGGG | 1 cut(s) | 2212 |
| BoxI | GACNNNNGTC | 1 cut(s) | 462 |
| BpiI | GAAGAC | 2 cut(s) | 31, 2576 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 409, 441 |
| BpmI | CTGGAG | 3 cut(s) | 326, 1314, 1547 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1159 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1860 |
| BpuEI | CTTGAG | 2 cut(s) | 64, 1434 |
| BpuMI | CCSGG | 1 cut(s) | 2635 |
| BsaAI | YACGTR | 1 cut(s) | 2023 |
| BsaBI | GATNNNNATC | 2 cut(s) | 381, 530 |
| BsaJI | CCNNGG | 3 cut(s) | 19, 605, 1823 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1819, 1849 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1552 |
| Bse1I | ACTGG | 3 cut(s) | 556, 2218, 2634 |
| Bse3DI | GCAATG | 2 cut(s) | 1219, 1623 |
| Bse8I | GATNNNNATC | 2 cut(s) | 381, 530 |
| BseBI | CCWGG | 2 cut(s) | 557, 1824 |
| BseDI | CCNNGG | 3 cut(s) | 19, 605, 1823 |
| BseJI | GATNNNNATC | 2 cut(s) | 381, 530 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1552 |
| BseMI | GCAATG | 2 cut(s) | 1219, 1623 |
| BseMII | CTCAG | 7 cut(s) | 177, 1173, 1381, 1760, 1976, 2238, 2289 |
| BseNI | ACTGG | 3 cut(s) | 556, 2218, 2634 |
| BseRI | GAGGAG | 1 cut(s) | 2483 |
| BseSI | GKGCMC | 1 cut(s) | 1507 |
| BseXI | GCAGC | 1 cut(s) | 2411 |
| BsgI | GTGCAG | 1 cut(s) | 1026 |
| Bsh1236I | CGCG | 3 cut(s) | 381, 463, 1509 |
| Bsh1285I | CGRYCG | 1 cut(s) | 379 |
| BshFI | GGCC | 5 cut(s) | 18, 84, 555, 2633, 2808 |
| BshNI | GGYRCC | 1 cut(s) | 2079 |
| BsiEI | CGRYCG | 1 cut(s) | 379 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1507, 1729, 2642 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1757 |
| BsiSI | CCGG | 1 cut(s) | 2634 |
| BslFI | GGGAC | 2 cut(s) | 470, 1529 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1552 |
| BsmAI | GTCTC | 7 cut(s) | 597, 1744, 1754, 1822, 1966, 2069, 2342 |
| BsmBI | CGTCTC | 1 cut(s) | 1822 |
| BsmFI | GGGAC | 2 cut(s) | 470, 1529 |
| BsmI | GAATGC | 1 cut(s) | 275 |
| BsnI | GGCC | 5 cut(s) | 18, 84, 555, 2633, 2808 |
| BsoBI | CYCGRG | 1 cut(s) | 1757 |
| Bsp1286I | GDGCHC | 3 cut(s) | 1507, 1729, 2642 |
| Bsp143I | GATC | 7 cut(s) | 72, 376, 382, 525, 901, 949, 1481 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1860 |
| Bsp68I | TCGCGA | 1 cut(s) | 381 |
| BspANI | GGCC | 5 cut(s) | 18, 84, 555, 2633, 2808 |
| BspCNI | CTCAG | 7 cut(s) | 176, 1172, 1380, 1759, 1977, 2239, 2290 |
| BspFNI | CGCG | 3 cut(s) | 381, 463, 1509 |
| BspHI | TCATGA | 1 cut(s) | 2050 |
| BspLI | GGNNCC | 5 cut(s) | 321, 1545, 1821, 2081, 2173 |
| BspPI | GGATC | 2 cut(s) | 377, 1489 |
| BspQI | GCTCTTC | 1 cut(s) | 132 |
| BspT107I | GGYRCC | 1 cut(s) | 2079 |
| BspTI | CTTAAG | 1 cut(s) | 2366 |
| BsrBI | CCGCTC | 1 cut(s) | 425 |
| BsrDI | GCAATG | 2 cut(s) | 1219, 1623 |
| BsrI | ACTGG | 3 cut(s) | 556, 2218, 2634 |
| BssECI | CCNNGG | 3 cut(s) | 19, 605, 1823 |
| BssMI | GATC | 7 cut(s) | 72, 376, 382, 525, 901, 949, 1481 |
| BssT1I | CCWWGG | 1 cut(s) | 605 |
| Bst2UI | CCWGG | 2 cut(s) | 557, 1824 |
| Bst4CI | ACNGT | 7 cut(s) | 398, 1700, 1738, 2000, 2012, 2040, 2763 |
| Bst6I | CTCTTC | 3 cut(s) | 132, 396, 1964 |
| BstAFI | CTTAAG | 1 cut(s) | 2366 |
| BstBAI | YACGTR | 1 cut(s) | 2023 |
| BstC8I | GCNNGC | 4 cut(s) | 1507, 1630, 1866, 2753 |
| BstDSI | CCRYGG | 1 cut(s) | 19 |
| BstFNI | CGCG | 3 cut(s) | 381, 463, 1509 |
| BstKTI | GATC | 7 cut(s) | 75, 379, 385, 528, 904, 952, 1484 |
| BstMAI | GTCTC | 7 cut(s) | 597, 1744, 1754, 1822, 1966, 2069, 2342 |
| BstMBI | GATC | 7 cut(s) | 72, 376, 382, 525, 901, 949, 1481 |
| BstMCI | CGRYCG | 1 cut(s) | 379 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 1865, 1990, 2479, 2539 |
| BstNI | CCWGG | 2 cut(s) | 557, 1824 |
| BstNSI | RCATGY | 1 cut(s) | 1523 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 462 |
| BstSCI | CCNGG | 3 cut(s) | 555, 1822, 2633 |
| BstSFI | CTRYAG | 2 cut(s) | 1887, 2702 |
| BstSLI | GKGCMC | 1 cut(s) | 1507 |
| BstUI | CGCG | 3 cut(s) | 381, 463, 1509 |
| BstV1I | GCAGC | 1 cut(s) | 2411 |
| BstV2I | GAAGAC | 2 cut(s) | 31, 2576 |
| BstX2I | RGATCY | 2 cut(s) | 72, 1481 |
| BstYI | RGATCY | 2 cut(s) | 72, 1481 |
| BsuI | GTATCC | 1 cut(s) | 55 |
| BsuRI | GGCC | 5 cut(s) | 18, 84, 555, 2633, 2808 |
| BtgI | CCRYGG | 1 cut(s) | 19 |
| BtgZI | GCGATG | 2 cut(s) | 1159, 2795 |
| BtrI | CACGTC | 1 cut(s) | 1936 |
| BtsIMutI | CAGTG | 3 cut(s) | 403, 1705, 2225 |
| BtuMI | TCGCGA | 1 cut(s) | 381 |
| Cac8I | GCNNGC | 4 cut(s) | 1507, 1630, 1866, 2753 |
| CciI | TCATGA | 1 cut(s) | 2050 |
| Cfr13I | GGNCC | 3 cut(s) | 420, 1543, 2692 |
| CseI | GACGC | 3 cut(s) | 452, 1604, 1961 |
| Csp6I | GTAC | 5 cut(s) | 407, 1268, 1414, 2080, 2286 |
| CviAII | CATG | 8 cut(s) | 237, 274, 1520, 1766, 2051, 2086, 2774, 2804 |
| CviQI | GTAC | 5 cut(s) | 407, 1268, 1414, 2080, 2286 |
| DpnI | GATC | 7 cut(s) | 74, 378, 384, 527, 903, 951, 1483 |
| DpnII | GATC | 7 cut(s) | 72, 376, 382, 525, 901, 949, 1481 |
| DraI | TTTAAA | 1 cut(s) | 517 |
| DraIII | CACNNNGTG | 1 cut(s) | 240 |
| EaeI | YGGCCR | 4 cut(s) | 16, 82, 2631, 2806 |
| Eam1104I | CTCTTC | 3 cut(s) | 132, 396, 1964 |
| EarI | CTCTTC | 3 cut(s) | 132, 396, 1964 |
| EciI | GGCGGA | 9 cut(s) | 638, 668, 698, 704, 743, 992, 1052, 1103, 1790 |
| Ecl136II | GAGCTC | 1 cut(s) | 1727 |
| Eco130I | CCWWGG | 1 cut(s) | 605 |
| Eco24I | GRGCYC | 1 cut(s) | 1729 |
| Eco47I | GGWCC | 3 cut(s) | 420, 1543, 2692 |
| Eco53kI | GAGCTC | 1 cut(s) | 1727 |
| Eco57I | CTGAAG | 6 cut(s) | 156, 378, 1372, 1584, 2246, 2555 |
| Eco72I | CACGTG | 1 cut(s) | 2023 |
| Eco88I | CYCGRG | 1 cut(s) | 1757 |
| EcoICRI | GAGCTC | 1 cut(s) | 1727 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1543 |
| EcoRI | GAATTC | 1 cut(s) | 2195 |
| EcoRII | CCWGG | 2 cut(s) | 555, 1822 |
| EcoT14I | CCWWGG | 1 cut(s) | 605 |
| EcoT22I | ATGCAT | 1 cut(s) | 275 |
| EcoT38I | GRGCYC | 1 cut(s) | 1729 |
| ErhI | CCWWGG | 1 cut(s) | 605 |
| Esp3I | CGTCTC | 1 cut(s) | 1822 |
| FaeI | CATG | 8 cut(s) | 240, 277, 1523, 1769, 2054, 2089, 2777, 2807 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1269, 1301, 1370, 1402 |
| FaqI | GGGAC | 2 cut(s) | 470, 1529 |
| FatI | CATG | 8 cut(s) | 236, 273, 1519, 1765, 2050, 2085, 2773, 2803 |
| FbaI | TGATCA | 1 cut(s) | 525 |
| Fnu4HI | GCNGC | 1 cut(s) | 2425 |
| FriOI | GRGCYC | 1 cut(s) | 1729 |
| Fsp4HI | GCNGC | 1 cut(s) | 2425 |
| GluI | GCNGC | 1 cut(s) | 2425 |
| GsuI | CTGGAG | 3 cut(s) | 326, 1314, 1547 |
| HaeIII | GGCC | 5 cut(s) | 18, 84, 555, 2633, 2808 |
| HapII | CCGG | 1 cut(s) | 2634 |
| HgaI | GACGC | 3 cut(s) | 452, 1604, 1961 |
| Hin1II | CATG | 8 cut(s) | 240, 277, 1523, 1769, 2054, 2089, 2777, 2807 |
| HincII | GTYRAC | 1 cut(s) | 2128 |
| HindII | GTYRAC | 1 cut(s) | 2128 |
| HindIII | AAGCTT | 3 cut(s) | 96, 360, 1579 |
| HinfI | GANTC | 7 cut(s) | 131, 188, 458, 590, 1296, 1808, 2119 |
| HpaII | CCGG | 1 cut(s) | 2634 |
| HphI | GGTGA | 5 cut(s) | 902, 1274, 1734, 2012, 2477 |
| Hpy166II | GTNNAC | 5 cut(s) | 338, 409, 1505, 2015, 2128 |
| Hpy8I | GTNNAC | 5 cut(s) | 338, 409, 1505, 2015, 2128 |
| Hpy99I | CGWCG | 1 cut(s) | 2734 |
| HpyAV | CCTTC | 8 cut(s) | 133, 1238, 1396, 1534, 1895, 2273, 2659, 2705 |
| HpyCH4III | ACNGT | 7 cut(s) | 398, 1700, 1738, 2000, 2012, 2040, 2763 |
| HpyCH4IV | ACGT | 5 cut(s) | 1236, 1831, 1935, 2022, 2743 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 1865, 1990, 2479, 2539 |
| HpySE526I | ACGT | 5 cut(s) | 1236, 1831, 1935, 2022, 2743 |
| Hsp92II | CATG | 8 cut(s) | 240, 277, 1523, 1769, 2054, 2089, 2777, 2807 |
| KpnI | GGTACC | 1 cut(s) | 2083 |
| Ksp22I | TGATCA | 1 cut(s) | 525 |
| Kzo9I | GATC | 7 cut(s) | 72, 376, 382, 525, 901, 949, 1481 |
| LguI | GCTCTTC | 1 cut(s) | 132 |
| LmnI | GCTCC | 4 cut(s) | 325, 1819, 2470, 2479 |
| Lsp1109I | GCAGC | 1 cut(s) | 2411 |
| LweI | GCATC | 4 cut(s) | 469, 1263, 1846, 2778 |
| MaeII | ACGT | 5 cut(s) | 1236, 1831, 1935, 2022, 2743 |
| MaeIII | GTNAC | 8 cut(s) | 256, 547, 1343, 1732, 1870, 2210, 2651, 2739 |
| MalI | GATC | 7 cut(s) | 74, 378, 384, 527, 903, 951, 1483 |
| MbiI | CCGCTC | 1 cut(s) | 425 |
| MboI | GATC | 7 cut(s) | 72, 376, 382, 525, 901, 949, 1481 |
| MfeI | CAATTG | 1 cut(s) | 2523 |
| MflI | RGATCY | 2 cut(s) | 72, 1481 |
| MhlI | GDGCHC | 3 cut(s) | 1507, 1729, 2642 |
| MlsI | TGGCCA | 1 cut(s) | 2808 |
| MluNI | TGGCCA | 1 cut(s) | 2808 |
| MlyI | GAGTC | 3 cut(s) | 452, 599, 1305 |
| MmeI | TCCRAC | 6 cut(s) | 5, 541, 726, 1893, 2172, 2402 |
| Mox20I | TGGCCA | 1 cut(s) | 2808 |
| Mph1103I | ATGCAT | 1 cut(s) | 275 |
| MroXI | GAANNNNTTC | 2 cut(s) | 568, 1284 |
| MscI | TGGCCA | 1 cut(s) | 2808 |
| MslI | CAYNNNNRTG | 7 cut(s) | 1331, 1510, 1998, 2025, 2072, 2390, 2778 |
| Msp20I | TGGCCA | 1 cut(s) | 2808 |
| MspCI | CTTAAG | 1 cut(s) | 2366 |
| MspI | CCGG | 1 cut(s) | 2634 |
| MspR9I | CCNGG | 3 cut(s) | 557, 1824, 2635 |
| MunI | CAATTG | 1 cut(s) | 2523 |
| Mva1269I | GAATGC | 1 cut(s) | 275 |
| MvaI | CCWGG | 2 cut(s) | 557, 1824 |
| MvnI | CGCG | 3 cut(s) | 381, 463, 1509 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 1865, 1990, 2479, 2539 |
| NciI | CCSGG | 1 cut(s) | 2635 |
| NdeII | GATC | 7 cut(s) | 72, 376, 382, 525, 901, 949, 1481 |
| NlaIII | CATG | 8 cut(s) | 240, 277, 1523, 1769, 2054, 2089, 2777, 2807 |
| NlaIV | GGNNCC | 5 cut(s) | 321, 1545, 1821, 2081, 2173 |
| NmeAIII | GCCGAG | 1 cut(s) | 508 |
| NmuCI | GTSAC | 3 cut(s) | 256, 547, 2210 |
| NruI | TCGCGA | 1 cut(s) | 381 |
| NsiI | ATGCAT | 1 cut(s) | 275 |
| NspI | RCATGY | 1 cut(s) | 1523 |
| OliI | CACNNNNGTG | 1 cut(s) | 1510 |
| PaeR7I | CTCGAG | 1 cut(s) | 1757 |
| PagI | TCATGA | 1 cut(s) | 2050 |
| PciI | ACATGT | 1 cut(s) | 1519 |
| PciSI | GCTCTTC | 1 cut(s) | 132 |
| PctI | GAATGC | 1 cut(s) | 275 |
| PdmI | GAANNNNTTC | 2 cut(s) | 568, 1284 |
| PfeI | GAWTC | 4 cut(s) | 131, 188, 1808, 2119 |
| PkrI | GCNGC | 1 cut(s) | 2426 |
| Ple19I | CGATCG | 1 cut(s) | 379 |
| PleI | GAGTC | 3 cut(s) | 452, 598, 1304 |
| PmaCI | CACGTG | 1 cut(s) | 2023 |
| PmlI | CACGTG | 1 cut(s) | 2023 |
| PpsI | GAGTC | 3 cut(s) | 452, 598, 1304 |
| Ppu21I | YACGTR | 1 cut(s) | 2023 |
| PpuMI | RGGWCCY | 1 cut(s) | 1543 |
| PscI | ACATGT | 1 cut(s) | 1519 |
| PshAI | GACNNNNGTC | 1 cut(s) | 462 |
| PshBI | ATTAAT | 2 cut(s) | 1436, 2256 |
| Psp124BI | GAGCTC | 1 cut(s) | 1729 |
| Psp5II | RGGWCCY | 1 cut(s) | 1543 |
| Psp6I | CCWGG | 2 cut(s) | 555, 1822 |
| PspCI | CACGTG | 1 cut(s) | 2023 |
| PspGI | CCWGG | 2 cut(s) | 555, 1822 |
| PspN4I | GGNNCC | 5 cut(s) | 321, 1545, 1821, 2081, 2173 |
| PspPI | GGNCC | 3 cut(s) | 420, 1543, 2692 |
| PspPPI | RGGWCCY | 1 cut(s) | 1543 |
| PsuI | RGATCY | 2 cut(s) | 72, 1481 |
| PvuI | CGATCG | 1 cut(s) | 379 |
| RruI | TCGCGA | 1 cut(s) | 381 |
| RsaI | GTAC | 5 cut(s) | 408, 1269, 1415, 2081, 2287 |
| RsaNI | GTAC | 5 cut(s) | 407, 1268, 1414, 2080, 2286 |
| RseI | CAYNNNNRTG | 7 cut(s) | 1331, 1510, 1998, 2025, 2072, 2390, 2778 |
| SacI | GAGCTC | 1 cut(s) | 1729 |
| SapI | GCTCTTC | 1 cut(s) | 132 |
| SatI | GCNGC | 1 cut(s) | 2425 |
| Sau3AI | GATC | 7 cut(s) | 72, 376, 382, 525, 901, 949, 1481 |
| Sau96I | GGNCC | 3 cut(s) | 420, 1543, 2692 |
| SchI | GAGTC | 3 cut(s) | 452, 599, 1305 |
| ScrFI | CCNGG | 3 cut(s) | 557, 1824, 2635 |
| SduI | GDGCHC | 3 cut(s) | 1507, 1729, 2642 |
| SfaNI | GCATC | 4 cut(s) | 469, 1263, 1846, 2778 |
| SfcI | CTRYAG | 2 cut(s) | 1887, 2702 |
| Sfr274I | CTCGAG | 1 cut(s) | 1757 |
| SinI | GGWCC | 3 cut(s) | 420, 1543, 2692 |
| SlaI | CTCGAG | 1 cut(s) | 1757 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 1331, 1510, 1998, 2025, 2072, 2390, 2778 |
| SmlI | CTYRAG | 4 cut(s) | 43, 1449, 1757, 2366 |
| SmoI | CTYRAG | 4 cut(s) | 43, 1449, 1757, 2366 |
| SpeI | ACTAGT | 3 cut(s) | 253, 1406, 2288 |
| SstI | GAGCTC | 1 cut(s) | 1729 |
| StyD4I | CCNGG | 3 cut(s) | 555, 1822, 2633 |
| StyI | CCWWGG | 1 cut(s) | 605 |
| TaaI | ACNGT | 7 cut(s) | 398, 1700, 1738, 2000, 2012, 2040, 2763 |
| TaiI | ACGT | 5 cut(s) | 1239, 1834, 1938, 2025, 2746 |
| TaqI | TCGA | 2 cut(s) | 1491, 1758 |
| TatI | WGTACW | 3 cut(s) | 1267, 1413, 2285 |
| TfiI | GAWTC | 4 cut(s) | 131, 188, 1808, 2119 |
| TscAI | CASTG | 3 cut(s) | 403, 1705, 2225 |
| TseFI | GTSAC | 3 cut(s) | 256, 547, 2210 |
| TseI | GCWGC | 1 cut(s) | 2424 |
| Tsp45I | GTSAC | 3 cut(s) | 256, 547, 2210 |
| TspRI | CASTG | 3 cut(s) | 403, 1705, 2225 |
| Vha464I | CTTAAG | 1 cut(s) | 2366 |
| VneI | GTGCAC | 1 cut(s) | 1503 |
| VpaK11BI | GGWCC | 3 cut(s) | 420, 1543, 2692 |
| VspI | ATTAAT | 2 cut(s) | 1436, 2256 |
| XapI | RAATTY | 3 cut(s) | 1208, 2195, 2674 |
| XbaI | TCTAGA | 1 cut(s) | 1618 |
| XceI | RCATGY | 1 cut(s) | 1523 |
| XhoI | CTCGAG | 1 cut(s) | 1757 |
| XmaJI | CCTAGG | 1 cut(s) | 605 |
| XmnI | GAANNNNTTC | 2 cut(s) | 568, 1284 |
| Zsp2I | ATGCAT | 1 cut(s) | 275 |