TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 13 - 184 | 1.3e-51 | TIR domain |
| TIR_2 | PF13676 | 16 - 111 | 2.1e-16 | TIR domain |
| NB-ARC | PF00931 | 200 - 365 | 1.2e-22 | NB-ARC domain |
| NACHT | PF05729 | 217 - 358 | 1.2e-06 | NACHT domain |
| WHD_ROQ1 | PF23282 | 433 - 505 | 2.7e-10 | Disease resistance protein Roq1-like, winged-helix domain |
| PK_Tyr_Ser-Thr | PF07714 | 571 - 779 | 1.4e-47 | Protein tyrosine and serine/threonine kinase |
| Pkinase | PF00069 | 571 - 772 | 2.1e-46 | Protein kinase domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 3 cut(s) | 1746, 1985, 2045 |
| AccII | CGCG | 2 cut(s) | 118, 846 |
| AccIII | TCCGGA | 1 cut(s) | 397 |
| AciI | CCGC | 5 cut(s) | 76, 377, 846, 1731, 1781 |
| AclI | AACGTT | 1 cut(s) | 997 |
| AclWI | GGATC | 8 cut(s) | 323, 336, 918, 1597, 1700, 2378, 2391, 2555 |
| AcoI | YGGCCR | 1 cut(s) | 2133 |
| AcsI | RAATTY | 5 cut(s) | 303, 466, 705, 828, 1823 |
| AcuI | CTGAAG | 4 cut(s) | 1256, 1657, 2072, 2552 |
| AfaI | GTAC | 8 cut(s) | 342, 541, 1193, 1771, 1954, 2061, 2156, 2680 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 567, 2393 |
| AflIII | ACRYGT | 1 cut(s) | 2621 |
| AjiI | CACGTC | 1 cut(s) | 325 |
| AjnI | CCWGG | 2 cut(s) | 1525, 1818 |
| Alw21I | GWGCWC | 5 cut(s) | 183, 537, 761, 1225, 2582 |
| Alw26I | GTCTC | 1 cut(s) | 2061 |
| Alw44I | GTGCAC | 2 cut(s) | 533, 1221 |
| AlwI | GGATC | 8 cut(s) | 323, 336, 918, 1597, 1700, 2378, 2391, 2555 |
| Ama87I | CYCGRG | 1 cut(s) | 6 |
| Aor13HI | TCCGGA | 1 cut(s) | 397 |
| AoxI | GGCC | 4 cut(s) | 3, 1739, 2133, 2474 |
| ApaLI | GTGCAC | 2 cut(s) | 533, 1221 |
| ApeKI | GCWGC | 3 cut(s) | 729, 790, 1688 |
| ApoI | RAATTY | 5 cut(s) | 303, 466, 705, 828, 1823 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 583 |
| AspLEI | GCGC | 2 cut(s) | 118, 1400 |
| AspS9I | GGNCC | 5 cut(s) | 4, 1739, 1964, 2397, 2666 |
| AsuC2I | CCSGG | 2 cut(s) | 7, 8 |
| AsuHPI | GGTGA | 2 cut(s) | 77, 1660 |
| AvaI | CYCGRG | 1 cut(s) | 6 |
| AvaII | GGWCC | 3 cut(s) | 1964, 2397, 2666 |
| AxyI | CCTNAGG | 1 cut(s) | 185 |
| BaeGI | GKGCMC | 2 cut(s) | 537, 1225 |
| BalI | TGGCCA | 1 cut(s) | 2135 |
| BamHI | GGATCC | 2 cut(s) | 328, 2383 |
| BanII | GRGCYC | 2 cut(s) | 183, 2344 |
| BbsI | GAAGAC | 2 cut(s) | 75, 1148 |
| Bbv12I | GWGCWC | 5 cut(s) | 183, 537, 761, 1225, 2582 |
| BbvI | GCAGC | 3 cut(s) | 741, 802, 1675 |
| BccI | CCATC | 6 cut(s) | 354, 652, 761, 1018, 1760, 1881 |
| BciT130I | CCWGG | 2 cut(s) | 1527, 1820 |
| BciVI | GTATCC | 1 cut(s) | 2186 |
| BcnI | CCSGG | 2 cut(s) | 7, 8 |
| BcoDI | GTCTC | 1 cut(s) | 2061 |
| BfaI | CTAG | 9 cut(s) | 683, 687, 987, 1226, 1373, 1383, 2093, 2378, 2670 |
| BfmI | CTRYAG | 2 cut(s) | 21, 2487 |
| BfoI | RGCGCY | 1 cut(s) | 1401 |
| BfuI | GTATCC | 1 cut(s) | 2186 |
| BglII | AGATCT | 2 cut(s) | 2115, 2650 |
| BisI | GCNGC | 3 cut(s) | 730, 791, 1689 |
| BlsI | GCNGC | 3 cut(s) | 731, 792, 1690 |
| Bme1390I | CCNGG | 4 cut(s) | 7, 8, 1527, 1820 |
| Bme18I | GGWCC | 3 cut(s) | 1964, 2397, 2666 |
| BmeT110I | CYCGRG | 1 cut(s) | 6 |
| BmgBI | CACGTC | 1 cut(s) | 325 |
| BmgT120I | GGNCC | 5 cut(s) | 4, 1739, 1964, 2397, 2666 |
| BmiI | GGNNCC | 6 cut(s) | 330, 2185, 2202, 2385, 2398, 2399 |
| BmrFI | CCNGG | 4 cut(s) | 7, 8, 1527, 1820 |
| BmsI | GCATC | 5 cut(s) | 613, 1867, 2460, 2471, 2605 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1510 |
| BpiI | GAAGAC | 2 cut(s) | 75, 1148 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 694, 726, 743, 775 |
| BpmI | CTGGAG | 2 cut(s) | 614, 2187 |
| BpuEI | CTTGAG | 1 cut(s) | 2566 |
| BpuMI | CCSGG | 2 cut(s) | 7, 8 |
| BsaAI | YACGTR | 2 cut(s) | 1459, 1952 |
| BsaBI | GATNNNNATC | 2 cut(s) | 171, 909 |
| BsaJI | CCNNGG | 3 cut(s) | 6, 32, 502 |
| BsaWI | WCCGGW | 1 cut(s) | 397 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2569, 2599 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 567, 2393 |
| Bse1I | ACTGG | 4 cut(s) | 597, 930, 1663, 1985 |
| Bse21I | CCTNAGG | 1 cut(s) | 185 |
| Bse3DI | GCAATG | 1 cut(s) | 1323 |
| Bse8I | GATNNNNATC | 2 cut(s) | 171, 909 |
| BseAI | TCCGGA | 1 cut(s) | 397 |
| BseBI | CCWGG | 2 cut(s) | 1527, 1820 |
| BseDI | CCNNGG | 3 cut(s) | 6, 32, 502 |
| BseGI | GGATG | 5 cut(s) | 663, 772, 1771, 1861, 1892 |
| BseJI | GATNNNNATC | 2 cut(s) | 171, 909 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 567, 2393 |
| BseMI | GCAATG | 1 cut(s) | 1323 |
| BseMII | CTCAG | 6 cut(s) | 44, 176, 576, 2485, 2606, 2661 |
| BseNI | ACTGG | 4 cut(s) | 597, 930, 1663, 1985 |
| BseRI | GAGGAG | 3 cut(s) | 425, 2054, 2165 |
| BseSI | GKGCMC | 2 cut(s) | 537, 1225 |
| BseXI | GCAGC | 3 cut(s) | 741, 802, 1675 |
| BseYI | CCCAGC | 1 cut(s) | 458 |
| BsgI | GTGCAG | 1 cut(s) | 2553 |
| Bsh1236I | CGCG | 2 cut(s) | 118, 846 |
| BshFI | GGCC | 4 cut(s) | 5, 1741, 2135, 2476 |
| BsiHKAI | GWGCWC | 5 cut(s) | 183, 537, 761, 1225, 2582 |
| BsiHKCI | CYCGRG | 1 cut(s) | 6 |
| BsiSI | CCGG | 2 cut(s) | 7, 398 |
| BsiWI | CGTACG | 1 cut(s) | 539 |
| BslFI | GGGAC | 3 cut(s) | 152, 175, 2383 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 567, 2393 |
| BsmAI | GTCTC | 1 cut(s) | 2061 |
| BsmFI | GGGAC | 3 cut(s) | 152, 175, 2383 |
| BsnI | GGCC | 4 cut(s) | 5, 1741, 2135, 2476 |
| BsoBI | CYCGRG | 1 cut(s) | 6 |
| Bsp1286I | GDGCHC | 6 cut(s) | 183, 537, 761, 1225, 2344, 2582 |
| Bsp13I | TCCGGA | 1 cut(s) | 397 |
| Bsp1407I | TGTACA | 2 cut(s) | 1191, 2059 |
| Bsp143I | GATC | 8 cut(s) | 328, 910, 1589, 1705, 2115, 2383, 2560, 2650 |
| Bsp19I | CCATGG | 1 cut(s) | 32 |
| BspACI | CCGC | 5 cut(s) | 76, 377, 846, 1731, 1781 |
| BspANI | GGCC | 4 cut(s) | 5, 1741, 2135, 2476 |
| BspCNI | CTCAG | 6 cut(s) | 45, 177, 575, 2484, 2605, 2660 |
| BspEI | TCCGGA | 1 cut(s) | 397 |
| BspFNI | CGCG | 2 cut(s) | 118, 846 |
| BspHI | TCATGA | 2 cut(s) | 712, 2524 |
| BspLI | GGNNCC | 6 cut(s) | 330, 2185, 2202, 2385, 2398, 2399 |
| BspMAI | CTGCAG | 2 cut(s) | 25, 2491 |
| BspPI | GGATC | 8 cut(s) | 323, 336, 918, 1597, 1700, 2378, 2391, 2555 |
| BsrDI | GCAATG | 1 cut(s) | 1323 |
| BsrGI | TGTACA | 2 cut(s) | 1191, 2059 |
| BsrI | ACTGG | 4 cut(s) | 597, 930, 1663, 1985 |
| BssECI | CCNNGG | 3 cut(s) | 6, 32, 502 |
| BssMI | GATC | 8 cut(s) | 328, 910, 1589, 1705, 2115, 2383, 2560, 2650 |
| BssT1I | CCWWGG | 2 cut(s) | 32, 502 |
| Bst2UI | CCWGG | 2 cut(s) | 1527, 1820 |
| Bst4CI | ACNGT | 5 cut(s) | 108, 539, 1125, 1914, 2252 |
| Bst6I | CTCTTC | 5 cut(s) | 285, 1211, 1301, 1633, 2409 |
| BstAUI | TGTACA | 2 cut(s) | 1191, 2059 |
| BstBAI | YACGTR | 2 cut(s) | 1459, 1952 |
| BstC8I | GCNNGC | 4 cut(s) | 1242, 1402, 1575, 2501 |
| BstDEI | CTNAG | 9 cut(s) | 53, 185, 562, 762, 808, 2320, 2471, 2592, 2647 |
| BstDSI | CCRYGG | 1 cut(s) | 32 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 565 |
| BstF5I | GGATG | 5 cut(s) | 663, 772, 1771, 1861, 1892 |
| BstFNI | CGCG | 2 cut(s) | 118, 846 |
| BstH2I | RGCGCY | 1 cut(s) | 1401 |
| BstHHI | GCGC | 2 cut(s) | 118, 1400 |
| BstKTI | GATC | 8 cut(s) | 331, 913, 1592, 1708, 2118, 2386, 2563, 2653 |
| BstMAI | GTCTC | 1 cut(s) | 2061 |
| BstMBI | GATC | 8 cut(s) | 328, 910, 1589, 1705, 2115, 2383, 2560, 2650 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 455, 1397 |
| BstNI | CCWGG | 2 cut(s) | 1527, 1820 |
| BstNSI | RCATGY | 6 cut(s) | 826, 1332, 1466, 1571, 2503, 2625 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1510 |
| BstSCI | CCNGG | 4 cut(s) | 5, 6, 1525, 1818 |
| BstSFI | CTRYAG | 2 cut(s) | 21, 2487 |
| BstSLI | GKGCMC | 2 cut(s) | 537, 1225 |
| BstUI | CGCG | 2 cut(s) | 118, 846 |
| BstV1I | GCAGC | 3 cut(s) | 741, 802, 1675 |
| BstV2I | GAAGAC | 2 cut(s) | 75, 1148 |
| BstX2I | RGATCY | 4 cut(s) | 328, 2115, 2383, 2650 |
| BstYI | RGATCY | 4 cut(s) | 328, 2115, 2383, 2650 |
| Bsu36I | CCTNAGG | 1 cut(s) | 185 |
| BsuI | GTATCC | 1 cut(s) | 2186 |
| BsuRI | GGCC | 4 cut(s) | 5, 1741, 2135, 2476 |
| BtgI | CCRYGG | 1 cut(s) | 32 |
| BtrI | CACGTC | 1 cut(s) | 325 |
| BtsCI | GGATG | 5 cut(s) | 663, 772, 1771, 1861, 1892 |
| BtsIMutI | CAGTG | 1 cut(s) | 2048 |
| Cac8I | GCNNGC | 4 cut(s) | 1242, 1402, 1575, 2501 |
| CciI | TCATGA | 2 cut(s) | 712, 2524 |
| CfoI | GCGC | 2 cut(s) | 118, 1400 |
| Cfr13I | GGNCC | 5 cut(s) | 4, 1739, 1964, 2397, 2666 |
| Cfr9I | CCCGGG | 1 cut(s) | 6 |
| Csp6I | GTAC | 8 cut(s) | 341, 540, 1192, 1770, 1953, 2060, 2155, 2679 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 932, 967 |
| CviQI | GTAC | 8 cut(s) | 341, 540, 1192, 1770, 1953, 2060, 2155, 2679 |
| DdeI | CTNAG | 9 cut(s) | 53, 185, 562, 762, 808, 2320, 2471, 2592, 2647 |
| DpnI | GATC | 8 cut(s) | 330, 912, 1591, 1707, 2117, 2385, 2562, 2652 |
| DpnII | GATC | 8 cut(s) | 328, 910, 1589, 1705, 2115, 2383, 2560, 2650 |
| DraI | TTTAAA | 1 cut(s) | 1090 |
| EaeI | YGGCCR | 1 cut(s) | 2133 |
| Eam1104I | CTCTTC | 5 cut(s) | 285, 1211, 1301, 1633, 2409 |
| EarI | CTCTTC | 5 cut(s) | 285, 1211, 1301, 1633, 2409 |
| Ecl136II | GAGCTC | 1 cut(s) | 181 |
| Eco130I | CCWWGG | 2 cut(s) | 32, 502 |
| Eco24I | GRGCYC | 2 cut(s) | 183, 2344 |
| Eco32I | GATATC | 3 cut(s) | 169, 1561, 1848 |
| Eco47I | GGWCC | 3 cut(s) | 1964, 2397, 2666 |
| Eco53kI | GAGCTC | 1 cut(s) | 181 |
| Eco57I | CTGAAG | 4 cut(s) | 1256, 1657, 2072, 2552 |
| Eco81I | CCTNAGG | 1 cut(s) | 185 |
| Eco88I | CYCGRG | 1 cut(s) | 6 |
| EcoICRI | GAGCTC | 1 cut(s) | 181 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 565 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2397 |
| EcoRI | GAATTC | 1 cut(s) | 466 |
| EcoRII | CCWGG | 2 cut(s) | 1525, 1818 |
| EcoRV | GATATC | 3 cut(s) | 169, 1561, 1848 |
| EcoT14I | CCWWGG | 2 cut(s) | 32, 502 |
| EcoT22I | ATGCAT | 2 cut(s) | 2006, 2453 |
| EcoT38I | GRGCYC | 2 cut(s) | 183, 2344 |
| ErhI | CCWWGG | 2 cut(s) | 32, 502 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1298, 1330, 2351, 2383 |
| FaqI | GGGAC | 3 cut(s) | 152, 175, 2383 |
| FauI | CCCGC | 1 cut(s) | 83 |
| FblI | GTMKAC | 3 cut(s) | 1746, 1985, 2045 |
| Fnu4HI | GCNGC | 3 cut(s) | 730, 791, 1689 |
| FokI | GGATG | 5 cut(s) | 670, 779, 1778, 1848, 1899 |
| FriOI | GRGCYC | 2 cut(s) | 183, 2344 |
| Fsp4HI | GCNGC | 3 cut(s) | 730, 791, 1689 |
| FspBI | CTAG | 9 cut(s) | 683, 687, 987, 1226, 1373, 1383, 2093, 2378, 2670 |
| GlaI | GCGC | 2 cut(s) | 117, 1399 |
| GluI | GCNGC | 3 cut(s) | 730, 791, 1689 |
| GsaI | CCCAGC | 1 cut(s) | 462 |
| GsuI | CTGGAG | 2 cut(s) | 614, 2187 |
| HaeII | RGCGCY | 1 cut(s) | 1401 |
| HaeIII | GGCC | 4 cut(s) | 5, 1741, 2135, 2476 |
| HapII | CCGG | 2 cut(s) | 7, 398 |
| HhaI | GCGC | 2 cut(s) | 118, 1400 |
| Hin6I | GCGC | 2 cut(s) | 116, 1398 |
| HinP1I | GCGC | 2 cut(s) | 116, 1398 |
| HincII | GTYRAC | 1 cut(s) | 2046 |
| HindII | GTYRAC | 1 cut(s) | 2046 |
| HindIII | AAGCTT | 2 cut(s) | 2138, 2389 |
| HpaII | CCGG | 2 cut(s) | 7, 398 |
| HphI | GGTGA | 2 cut(s) | 77, 1660 |
| Hpy166II | GTNNAC | 9 cut(s) | 535, 697, 1223, 1747, 1986, 2046, 2157, 2248, 2681 |
| Hpy8I | GTNNAC | 9 cut(s) | 535, 697, 1223, 1747, 1986, 2046, 2157, 2248, 2681 |
| Hpy99I | CGWCG | 3 cut(s) | 905, 1509, 2150 |
| HpyAV | CCTTC | 5 cut(s) | 342, 716, 1681, 2047, 2501 |
| HpyCH4III | ACNGT | 5 cut(s) | 108, 539, 1125, 1914, 2252 |
| HpyCH4IV | ACGT | 7 cut(s) | 324, 542, 997, 1458, 1618, 1951, 2642 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 455, 1397 |
| HpyF3I | CTNAG | 9 cut(s) | 53, 185, 562, 762, 808, 2320, 2471, 2592, 2647 |
| HpySE526I | ACGT | 7 cut(s) | 324, 542, 997, 1458, 1618, 1951, 2642 |
| HspAI | GCGC | 2 cut(s) | 116, 1398 |
| KflI | GGGWCCC | 1 cut(s) | 2397 |
| Kpn2I | TCCGGA | 1 cut(s) | 397 |
| Kzo9I | GATC | 8 cut(s) | 328, 910, 1589, 1705, 2115, 2383, 2560, 2650 |
| LmnI | GCTCC | 6 cut(s) | 22, 186, 1249, 1354, 2206, 2577 |
| Lsp1109I | GCAGC | 3 cut(s) | 741, 802, 1675 |
| LweI | GCATC | 5 cut(s) | 613, 1867, 2460, 2471, 2605 |
| MaeI | CTAG | 9 cut(s) | 683, 687, 987, 1226, 1373, 1383, 2093, 2378, 2670 |
| MaeII | ACGT | 7 cut(s) | 324, 542, 997, 1458, 1618, 1951, 2642 |
| MaeIII | GTNAC | 2 cut(s) | 265, 979 |
| MalI | GATC | 8 cut(s) | 330, 912, 1591, 1707, 2117, 2385, 2562, 2652 |
| MboI | GATC | 8 cut(s) | 328, 910, 1589, 1705, 2115, 2383, 2560, 2650 |
| MfeI | CAATTG | 2 cut(s) | 192, 1599 |
| MflI | RGATCY | 4 cut(s) | 328, 2115, 2383, 2650 |
| MhlI | GDGCHC | 6 cut(s) | 183, 537, 761, 1225, 2344, 2582 |
| MlsI | TGGCCA | 1 cut(s) | 2135 |
| MluNI | TGGCCA | 1 cut(s) | 2135 |
| MlyI | GAGTC | 5 cut(s) | 976, 981, 1445, 1520, 2051 |
| MmeI | TCCRAC | 6 cut(s) | 90, 556, 1058, 1083, 1743, 2588 |
| Mox20I | TGGCCA | 1 cut(s) | 2135 |
| Mph1103I | ATGCAT | 2 cut(s) | 2006, 2453 |
| MroI | TCCGGA | 1 cut(s) | 397 |
| MroXI | GAANNNNTTC | 1 cut(s) | 583 |
| MscI | TGGCCA | 1 cut(s) | 2135 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1467 |
| Msp20I | TGGCCA | 1 cut(s) | 2135 |
| MspI | CCGG | 2 cut(s) | 7, 398 |
| MspR9I | CCNGG | 4 cut(s) | 7, 8, 1527, 1820 |
| MunI | CAATTG | 2 cut(s) | 192, 1599 |
| MvaI | CCWGG | 2 cut(s) | 1527, 1820 |
| MvnI | CGCG | 2 cut(s) | 118, 846 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 455, 1397 |
| NciI | CCSGG | 2 cut(s) | 7, 8 |
| NcoI | CCATGG | 1 cut(s) | 32 |
| NdeII | GATC | 8 cut(s) | 328, 910, 1589, 1705, 2115, 2383, 2560, 2650 |
| NlaIV | GGNNCC | 6 cut(s) | 330, 2185, 2202, 2385, 2398, 2399 |
| NsiI | ATGCAT | 2 cut(s) | 2006, 2453 |
| NspI | RCATGY | 6 cut(s) | 826, 1332, 1466, 1571, 2503, 2625 |
| PaeI | GCATGC | 1 cut(s) | 2503 |
| PagI | TCATGA | 2 cut(s) | 712, 2524 |
| PciI | ACATGT | 1 cut(s) | 2621 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 349 |
| PdmI | GAANNNNTTC | 1 cut(s) | 583 |
| PfeI | GAWTC | 8 cut(s) | 123, 507, 557, 584, 849, 1311, 1648, 1898 |
| Pfl23II | CGTACG | 1 cut(s) | 539 |
| PflFI | GACNNNGTC | 1 cut(s) | 2482 |
| PkrI | GCNGC | 3 cut(s) | 731, 792, 1690 |
| PleI | GAGTC | 5 cut(s) | 975, 980, 1445, 1519, 2050 |
| PpsI | GAGTC | 5 cut(s) | 975, 980, 1445, 1519, 2050 |
| Ppu21I | YACGTR | 2 cut(s) | 1459, 1952 |
| PpuMI | RGGWCCY | 1 cut(s) | 2397 |
| PscI | ACATGT | 1 cut(s) | 2621 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1510 |
| Psp124BI | GAGCTC | 1 cut(s) | 183 |
| Psp1406I | AACGTT | 1 cut(s) | 997 |
| Psp5II | RGGWCCY | 1 cut(s) | 2397 |
| Psp6I | CCWGG | 2 cut(s) | 1525, 1818 |
| PspFI | CCCAGC | 1 cut(s) | 458 |
| PspGI | CCWGG | 2 cut(s) | 1525, 1818 |
| PspLI | CGTACG | 1 cut(s) | 539 |
| PspN4I | GGNNCC | 6 cut(s) | 330, 2185, 2202, 2385, 2398, 2399 |
| PspPI | GGNCC | 5 cut(s) | 4, 1739, 1964, 2397, 2666 |
| PspPPI | RGGWCCY | 1 cut(s) | 2397 |
| PstI | CTGCAG | 2 cut(s) | 25, 2491 |
| PsuI | RGATCY | 4 cut(s) | 328, 2115, 2383, 2650 |
| PsyI | GACNNNGTC | 1 cut(s) | 2482 |
| RsaI | GTAC | 8 cut(s) | 342, 541, 1193, 1771, 1954, 2061, 2156, 2680 |
| RsaNI | GTAC | 8 cut(s) | 341, 540, 1192, 1770, 1953, 2060, 2155, 2679 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1467 |
| SacI | GAGCTC | 1 cut(s) | 183 |
| SalI | GTCGAC | 1 cut(s) | 2044 |
| SatI | GCNGC | 3 cut(s) | 730, 791, 1689 |
| Sau3AI | GATC | 8 cut(s) | 328, 910, 1589, 1705, 2115, 2383, 2560, 2650 |
| Sau96I | GGNCC | 5 cut(s) | 4, 1739, 1964, 2397, 2666 |
| SchI | GAGTC | 5 cut(s) | 976, 981, 1445, 1520, 2051 |
| ScrFI | CCNGG | 4 cut(s) | 7, 8, 1527, 1820 |
| SduI | GDGCHC | 6 cut(s) | 183, 537, 761, 1225, 2344, 2582 |
| SfaNI | GCATC | 5 cut(s) | 613, 1867, 2460, 2471, 2605 |
| SfcI | CTRYAG | 2 cut(s) | 21, 2487 |
| SinI | GGWCC | 3 cut(s) | 1964, 2397, 2666 |
| SmaI | CCCGGG | 1 cut(s) | 8 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1467 |
| SmlI | CTYRAG | 1 cut(s) | 2545 |
| SmoI | CTYRAG | 1 cut(s) | 2545 |
| SphI | GCATGC | 1 cut(s) | 2503 |
| SrfI | GCCCGGGC | 1 cut(s) | 8 |
| SsiI | CCGC | 5 cut(s) | 76, 377, 846, 1731, 1781 |
| SspMI | CTAG | 9 cut(s) | 683, 687, 987, 1226, 1373, 1383, 2093, 2378, 2670 |
| SstI | GAGCTC | 1 cut(s) | 183 |
| StyD4I | CCNGG | 4 cut(s) | 5, 6, 1525, 1818 |
| StyI | CCWWGG | 2 cut(s) | 32, 502 |
| TaaI | ACNGT | 5 cut(s) | 108, 539, 1125, 1914, 2252 |
| TaiI | ACGT | 7 cut(s) | 327, 545, 1000, 1461, 1621, 1954, 2645 |
| TaqI | TCGA | 7 cut(s) | 227, 900, 970, 1204, 1504, 1636, 2045 |
| TatI | WGTACW | 4 cut(s) | 1191, 2059, 2154, 2678 |
| TfiI | GAWTC | 8 cut(s) | 123, 507, 557, 584, 849, 1311, 1648, 1898 |
| TscAI | CASTG | 1 cut(s) | 2055 |
| TseI | GCWGC | 3 cut(s) | 729, 790, 1688 |
| TspGWI | ACGGA | 1 cut(s) | 2527 |
| TspMI | CCCGGG | 1 cut(s) | 6 |
| TspRI | CASTG | 1 cut(s) | 2055 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2482 |
| VneI | GTGCAC | 2 cut(s) | 533, 1221 |
| VpaK11BI | GGWCC | 3 cut(s) | 1964, 2397, 2666 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 565 |
| XapI | RAATTY | 5 cut(s) | 303, 466, 705, 828, 1823 |
| XceI | RCATGY | 6 cut(s) | 826, 1332, 1466, 1571, 2503, 2625 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 1343, 2194 |
| XmaI | CCCGGG | 1 cut(s) | 6 |
| XmiI | GTMKAC | 3 cut(s) | 1746, 1985, 2045 |
| XmnI | GAANNNNTTC | 1 cut(s) | 583 |
| XspI | CTAG | 9 cut(s) | 683, 687, 987, 1226, 1373, 1383, 2093, 2378, 2670 |
| Zsp2I | ATGCAT | 2 cut(s) | 2006, 2453 |