TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 2 - 69 | 7.9e-09 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 75 |
| AciI | CCGC | 1 cut(s) | 37 |
| AcsI | RAATTY | 1 cut(s) | 12 |
| AcuI | CTGAAG | 1 cut(s) | 395 |
| AgsI | TTSAA | 6 cut(s) | 68, 299, 350, 468, 491, 578 |
| AhlI | ACTAGT | 1 cut(s) | 70 |
| AjnI | CCWGG | 2 cut(s) | 153, 220 |
| AluBI | AGCT | 1 cut(s) | 379 |
| AluI | AGCT | 1 cut(s) | 379 |
| AoxI | GGCC | 1 cut(s) | 412 |
| ApeKI | GCWGC | 1 cut(s) | 379 |
| ApoI | RAATTY | 1 cut(s) | 12 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 198 |
| AspS9I | GGNCC | 1 cut(s) | 413 |
| AsuHPI | GGTGA | 1 cut(s) | 530 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 368, 400 |
| BbsI | GAAGAC | 2 cut(s) | 236, 416 |
| BbvI | GCAGC | 1 cut(s) | 366 |
| BccI | CCATC | 1 cut(s) | 591 |
| BciT130I | CCWGG | 2 cut(s) | 155, 222 |
| BciVI | GTATCC | 1 cut(s) | 471 |
| BclI | TGATCA | 1 cut(s) | 535 |
| BcuI | ACTAGT | 1 cut(s) | 70 |
| BfaI | CTAG | 1 cut(s) | 71 |
| BfuI | GTATCC | 1 cut(s) | 471 |
| BisI | GCNGC | 1 cut(s) | 380 |
| BlsI | GCNGC | 1 cut(s) | 381 |
| Bme1390I | CCNGG | 2 cut(s) | 155, 222 |
| BmgT120I | GGNCC | 1 cut(s) | 413 |
| BmrFI | CCNGG | 2 cut(s) | 155, 222 |
| BpiI | GAAGAC | 2 cut(s) | 236, 416 |
| BpuEI | CTTGAG | 1 cut(s) | 457 |
| Bsa29I | ATCGAT | 1 cut(s) | 586 |
| BsaBI | GATNNNNATC | 1 cut(s) | 342 |
| BsaWI | WCCGGW | 1 cut(s) | 493 |
| Bse3DI | GCAATG | 2 cut(s) | 24, 58 |
| Bse8I | GATNNNNATC | 1 cut(s) | 342 |
| BseBI | CCWGG | 2 cut(s) | 155, 222 |
| BseCI | ATCGAT | 1 cut(s) | 586 |
| BseGI | GGATG | 1 cut(s) | 502 |
| BseJI | GATNNNNATC | 1 cut(s) | 342 |
| BseMI | GCAATG | 2 cut(s) | 24, 58 |
| BseMII | CTCAG | 3 cut(s) | 111, 437, 526 |
| BseXI | GCAGC | 1 cut(s) | 366 |
| BshFI | GGCC | 1 cut(s) | 414 |
| BshVI | ATCGAT | 1 cut(s) | 586 |
| BsiSI | CCGG | 1 cut(s) | 494 |
| BsnI | GGCC | 1 cut(s) | 414 |
| Bsp143I | GATC | 2 cut(s) | 535, 587 |
| BspACI | CCGC | 1 cut(s) | 37 |
| BspANI | GGCC | 1 cut(s) | 414 |
| BspCNI | CTCAG | 3 cut(s) | 112, 438, 525 |
| BspDI | ATCGAT | 1 cut(s) | 586 |
| BspQI | GCTCTTC | 1 cut(s) | 210 |
| BsrDI | GCAATG | 2 cut(s) | 24, 58 |
| BssMI | GATC | 2 cut(s) | 535, 587 |
| BssNAI | GTATAC | 1 cut(s) | 76 |
| Bst1107I | GTATAC | 1 cut(s) | 76 |
| Bst2UI | CCWGG | 2 cut(s) | 155, 222 |
| Bst4CI | ACNGT | 1 cut(s) | 80 |
| Bst6I | CTCTTC | 2 cut(s) | 210, 324 |
| BstC8I | GCNNGC | 1 cut(s) | 41 |
| BstDEI | CTNAG | 4 cut(s) | 120, 446, 512, 591 |
| BstF5I | GGATG | 1 cut(s) | 502 |
| BstKTI | GATC | 2 cut(s) | 538, 590 |
| BstMBI | GATC | 2 cut(s) | 535, 587 |
| BstNI | CCWGG | 2 cut(s) | 155, 222 |
| BstNSI | RCATGY | 1 cut(s) | 192 |
| BstSCI | CCNGG | 2 cut(s) | 153, 220 |
| BstV1I | GCAGC | 1 cut(s) | 366 |
| BstV2I | GAAGAC | 2 cut(s) | 236, 416 |
| BstZ17I | GTATAC | 1 cut(s) | 76 |
| Bsu15I | ATCGAT | 1 cut(s) | 586 |
| BsuI | GTATCC | 1 cut(s) | 471 |
| BsuRI | GGCC | 1 cut(s) | 414 |
| BsuTUI | ATCGAT | 1 cut(s) | 586 |
| BtsCI | GGATG | 1 cut(s) | 502 |
| Cac8I | GCNNGC | 1 cut(s) | 41 |
| Cfr13I | GGNCC | 1 cut(s) | 413 |
| ClaI | ATCGAT | 1 cut(s) | 586 |
| CseI | GACGC | 1 cut(s) | 237 |
| CsiI | ACCWGGT | 1 cut(s) | 153 |
| CviAII | CATG | 4 cut(s) | 167, 189, 263, 483 |
| CviJI | RGCY | 8 cut(s) | 43, 220, 293, 320, 353, 379, 403, 414 |
| CviKI_1 | RGCY | 8 cut(s) | 43, 220, 293, 320, 353, 379, 403, 414 |
| DdeI | CTNAG | 4 cut(s) | 120, 446, 512, 591 |
| DpnI | GATC | 2 cut(s) | 537, 589 |
| DpnII | GATC | 2 cut(s) | 535, 587 |
| Eam1104I | CTCTTC | 2 cut(s) | 210, 324 |
| EarI | CTCTTC | 2 cut(s) | 210, 324 |
| Eco57I | CTGAAG | 1 cut(s) | 395 |
| EcoRII | CCWGG | 2 cut(s) | 153, 220 |
| FaeI | CATG | 4 cut(s) | 170, 192, 266, 486 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 549, 581 |
| FatI | CATG | 4 cut(s) | 166, 188, 262, 482 |
| FbaI | TGATCA | 1 cut(s) | 535 |
| FblI | GTMKAC | 1 cut(s) | 75 |
| Fnu4HI | GCNGC | 1 cut(s) | 380 |
| FokI | GGATG | 1 cut(s) | 509 |
| Fsp4HI | GCNGC | 1 cut(s) | 380 |
| FspBI | CTAG | 1 cut(s) | 71 |
| GluI | GCNGC | 1 cut(s) | 380 |
| HaeIII | GGCC | 1 cut(s) | 414 |
| HapII | CCGG | 1 cut(s) | 494 |
| HgaI | GACGC | 1 cut(s) | 237 |
| Hin1II | CATG | 4 cut(s) | 170, 192, 266, 486 |
| HinfI | GANTC | 1 cut(s) | 343 |
| HpaII | CCGG | 1 cut(s) | 494 |
| HphI | GGTGA | 1 cut(s) | 530 |
| Hpy166II | GTNNAC | 3 cut(s) | 76, 227, 371 |
| Hpy188I | TCNGA | 3 cut(s) | 85, 148, 447 |
| Hpy188III | TCNNGA | 2 cut(s) | 20, 347 |
| Hpy8I | GTNNAC | 3 cut(s) | 76, 227, 371 |
| HpyAV | CCTTC | 3 cut(s) | 293, 364, 474 |
| HpyCH4III | ACNGT | 1 cut(s) | 80 |
| HpyCH4V | TGCA | 2 cut(s) | 93, 166 |
| HpyF3I | CTNAG | 4 cut(s) | 120, 446, 512, 591 |
| Hsp92II | CATG | 4 cut(s) | 170, 192, 266, 486 |
| Ksp22I | TGATCA | 1 cut(s) | 535 |
| Kzo9I | GATC | 2 cut(s) | 535, 587 |
| LguI | GCTCTTC | 1 cut(s) | 210 |
| LpnPI | CCDG | 7 cut(s) | 5, 25, 140, 167, 207, 234, 507 |
| Lsp1109I | GCAGC | 1 cut(s) | 366 |
| MabI | ACCWGGT | 1 cut(s) | 153 |
| MaeI | CTAG | 1 cut(s) | 71 |
| MalI | GATC | 2 cut(s) | 537, 589 |
| MboI | GATC | 2 cut(s) | 535, 587 |
| MboII | GAAGA | 5 cut(s) | 19, 227, 236, 341, 416 |
| MluCI | AATT | 4 cut(s) | 12, 195, 323, 394 |
| MmeI | TCCRAC | 1 cut(s) | 431 |
| MnlI | CCTC | 2 cut(s) | 325, 393 |
| MroXI | GAANNNNTTC | 1 cut(s) | 198 |
| MseI | TTAA | 1 cut(s) | 134 |
| MspI | CCGG | 1 cut(s) | 494 |
| MspR9I | CCNGG | 2 cut(s) | 155, 222 |
| MvaI | CCWGG | 2 cut(s) | 155, 222 |
| NdeII | GATC | 2 cut(s) | 535, 587 |
| NlaIII | CATG | 4 cut(s) | 170, 192, 266, 486 |
| NspI | RCATGY | 1 cut(s) | 192 |
| PciSI | GCTCTTC | 1 cut(s) | 210 |
| PdmI | GAANNNNTTC | 1 cut(s) | 198 |
| PfeI | GAWTC | 1 cut(s) | 343 |
| PflFI | GACNNNGTC | 1 cut(s) | 231 |
| PkrI | GCNGC | 1 cut(s) | 381 |
| Psp6I | CCWGG | 2 cut(s) | 153, 220 |
| PspGI | CCWGG | 2 cut(s) | 153, 220 |
| PspPI | GGNCC | 1 cut(s) | 413 |
| PsyI | GACNNNGTC | 1 cut(s) | 231 |
| SapI | GCTCTTC | 1 cut(s) | 210 |
| SaqAI | TTAA | 1 cut(s) | 134 |
| SatI | GCNGC | 1 cut(s) | 380 |
| Sau3AI | GATC | 2 cut(s) | 535, 587 |
| Sau96I | GGNCC | 1 cut(s) | 413 |
| ScrFI | CCNGG | 2 cut(s) | 155, 222 |
| SetI | ASST | 3 cut(s) | 159, 381, 543 |
| SexAI | ACCWGGT | 1 cut(s) | 153 |
| SmlI | CTYRAG | 1 cut(s) | 436 |
| SmoI | CTYRAG | 1 cut(s) | 436 |
| SpeI | ACTAGT | 1 cut(s) | 70 |
| Sse9I | AATT | 4 cut(s) | 12, 195, 323, 394 |
| SsiI | CCGC | 1 cut(s) | 37 |
| SspI | AATATT | 1 cut(s) | 532 |
| SspMI | CTAG | 1 cut(s) | 71 |
| StyD4I | CCNGG | 2 cut(s) | 153, 220 |
| TaaI | ACNGT | 1 cut(s) | 80 |
| TaqI | TCGA | 1 cut(s) | 586 |
| TasI | AATT | 4 cut(s) | 12, 195, 323, 394 |
| TfiI | GAWTC | 1 cut(s) | 343 |
| Tru1I | TTAA | 1 cut(s) | 134 |
| Tru9I | TTAA | 1 cut(s) | 134 |
| TseI | GCWGC | 1 cut(s) | 379 |
| TspDTI | ATGAA | 6 cut(s) | 132, 228, 251, 380, 512, 513 |
| Tth111I | GACNNNGTC | 1 cut(s) | 231 |
| XapI | RAATTY | 1 cut(s) | 12 |
| XceI | RCATGY | 1 cut(s) | 192 |
| XmiI | GTMKAC | 1 cut(s) | 75 |
| XmnI | GAANNNNTTC | 1 cut(s) | 198 |
| XspI | CTAG | 1 cut(s) | 71 |