TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 12 - 183 | 2.2e-54 | TIR domain |
| TIR_2 | PF13676 | 15 - 111 | 2.1e-15 | TIR domain |
| NB-ARC | PF00931 | 206 - 360 | 1.8e-19 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 428 - 496 | 7.4e-19 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 547 - 625 | 6.5e-08 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 594 - 675 | 1.2e-07 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 669 - 753 | 1.3e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 670 - 741 | 2.5e-07 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 732 - 796 | 1.4e-09 | Leucine-rich repeat region |
| LRR_14 | PF23598 | 823 - 892 | 2.1e-09 | Leucine-rich repeat region |
| LRR_8 | PF13855 | 834 - 889 | 2.3e-07 | Leucine rich repeat |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 3 cut(s) | 624, 1542, 3093 |
| Acc36I | ACCTGC | 1 cut(s) | 541 |
| AccB1I | GGYRCC | 1 cut(s) | 2664 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1465 |
| AccBSI | CCGCTC | 2 cut(s) | 680, 2969 |
| AccII | CGCG | 2 cut(s) | 3135, 3176 |
| AclWI | GGATC | 6 cut(s) | 134, 320, 2523, 2805, 2935, 2948 |
| AcoI | YGGCCR | 3 cut(s) | 2626, 2730, 3019 |
| AcsI | RAATTY | 9 cut(s) | 270, 463, 567, 704, 710, 1028, 1242, 2578, 2876 |
| AcuI | CTGAAG | 3 cut(s) | 1034, 1110, 2660 |
| AcvI | CACGTG | 1 cut(s) | 2986 |
| AcyI | GRCGYC | 3 cut(s) | 621, 1539, 3090 |
| AdeI | CACNNNGTG | 1 cut(s) | 2989 |
| AfaI | GTAC | 5 cut(s) | 339, 1161, 1356, 1644, 3108 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 846, 1465, 1781, 2901, 3136, 3204 |
| AflIII | ACRYGT | 1 cut(s) | 1546 |
| AjiI | CACGTC | 1 cut(s) | 1549 |
| AjnI | CCWGG | 1 cut(s) | 1504 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 546, 578, 919, 951 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1380, 1412 |
| Alw21I | GWGCWC | 4 cut(s) | 8, 17, 2823, 3174 |
| Alw26I | GTCTC | 6 cut(s) | 732, 1145, 1799, 2012, 2225, 3147 |
| AlwI | GGATC | 6 cut(s) | 134, 320, 2523, 2805, 2935, 2948 |
| Ama87I | CYCGRG | 2 cut(s) | 3035, 3050 |
| AoxI | GGCC | 5 cut(s) | 807, 2065, 2626, 2730, 3019 |
| ApeKI | GCWGC | 4 cut(s) | 185, 304, 583, 3059 |
| ApoI | RAATTY | 9 cut(s) | 270, 463, 567, 704, 710, 1028, 1242, 2578, 2876 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 987, 1019, 2437, 2469, 3087, 3119 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1070, 1098, 1298, 2649 |
| AspLEI | GCGC | 4 cut(s) | 1515, 2756, 2994, 3135 |
| AspS9I | GGNCC | 2 cut(s) | 807, 2065 |
| AsuC2I | CCSGG | 1 cut(s) | 3018 |
| AsuHPI | GGTGA | 4 cut(s) | 12, 74, 2391, 2884 |
| AvaI | CYCGRG | 2 cut(s) | 3035, 3050 |
| AxyI | CCTNAGG | 1 cut(s) | 3084 |
| BaeGI | GKGCMC | 1 cut(s) | 2967 |
| BamHI | GGATCC | 1 cut(s) | 2940 |
| BanI | GGYRCC | 1 cut(s) | 2664 |
| BanII | GRGCYC | 4 cut(s) | 17, 1169, 3049, 3174 |
| BauI | CACGAG | 2 cut(s) | 699, 2960 |
| BbrPI | CACGTG | 1 cut(s) | 2986 |
| BbsI | GAAGAC | 4 cut(s) | 1441, 1542, 1970, 2183 |
| Bbv12I | GWGCWC | 4 cut(s) | 8, 17, 2823, 3174 |
| BbvI | GCAGC | 4 cut(s) | 172, 291, 595, 3046 |
| BccI | CCATC | 4 cut(s) | 99, 1265, 2344, 2788 |
| BceAI | ACGGC | 3 cut(s) | 2745, 3178, 3182 |
| BciT130I | CCWGG | 1 cut(s) | 1506 |
| BciVI | GTATCC | 1 cut(s) | 61 |
| BclI | TGATCA | 1 cut(s) | 1359 |
| BcnI | CCSGG | 1 cut(s) | 3018 |
| BcoDI | GTCTC | 6 cut(s) | 732, 1145, 1799, 2012, 2225, 3147 |
| BfaI | CTAG | 7 cut(s) | 560, 972, 1220, 1277, 1304, 2481, 2637 |
| BfmI | CTRYAG | 1 cut(s) | 1776 |
| BfuAI | ACCTGC | 1 cut(s) | 541 |
| BfuI | GTATCC | 1 cut(s) | 61 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1510 |
| BglII | AGATCT | 4 cut(s) | 1186, 1409, 1801, 2014 |
| BisI | GCNGC | 6 cut(s) | 186, 305, 444, 584, 2668, 3060 |
| BlsI | GCNGC | 6 cut(s) | 187, 306, 445, 585, 2669, 3061 |
| BmcAI | AGTACT | 2 cut(s) | 1161, 1356 |
| Bme1390I | CCNGG | 2 cut(s) | 1506, 3018 |
| BmeT110I | CYCGRG | 2 cut(s) | 3035, 3050 |
| BmgBI | CACGTC | 1 cut(s) | 1549 |
| BmgT120I | GGNCC | 2 cut(s) | 807, 2065 |
| BmiI | GGNNCC | 3 cut(s) | 835, 2666, 2942 |
| BmrFI | CCNGG | 2 cut(s) | 1506, 3018 |
| BmrI | ACTGGG | 2 cut(s) | 1172, 2541 |
| BmsI | GCATC | 7 cut(s) | 245, 545, 1735, 1870, 2083, 2631, 3114 |
| BmuI | ACTGGG | 2 cut(s) | 1172, 2541 |
| BoxI | GACNNNNGTC | 3 cut(s) | 1716, 1851, 3071 |
| BpiI | GAAGAC | 4 cut(s) | 1441, 1542, 1970, 2183 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 680, 712, 682, 714, 2089, 2121 |
| BpmI | CTGGAG | 2 cut(s) | 156, 3113 |
| BpuEI | CTTGAG | 3 cut(s) | 559, 1972, 2185 |
| BpuMI | CCSGG | 1 cut(s) | 3018 |
| Bsa29I | ATCGAT | 1 cut(s) | 3122 |
| BsaAI | YACGTR | 2 cut(s) | 1646, 2986 |
| BsaBI | GATNNNNATC | 3 cut(s) | 324, 1806, 2019 |
| BsaHI | GRCGYC | 3 cut(s) | 621, 1539, 3090 |
| BsaI | GGTCTC | 1 cut(s) | 1145 |
| BsaJI | CCNNGG | 4 cut(s) | 26, 2123, 2895, 3016 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 846, 1465, 1781, 2901, 3136, 3204 |
| Bse1I | ACTGG | 4 cut(s) | 1167, 2517, 2547, 3114 |
| Bse21I | CCTNAGG | 1 cut(s) | 3084 |
| Bse3DI | GCAATG | 1 cut(s) | 2681 |
| Bse8I | GATNNNNATC | 3 cut(s) | 324, 1806, 2019 |
| BseBI | CCWGG | 1 cut(s) | 1506 |
| BseCI | ATCGAT | 1 cut(s) | 3122 |
| BseDI | CCNNGG | 4 cut(s) | 26, 2123, 2895, 3016 |
| BseGI | GGATG | 4 cut(s) | 142, 622, 2336, 2390 |
| BseJI | GATNNNNATC | 3 cut(s) | 324, 1806, 2019 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 846, 1465, 1781, 2901, 3136, 3204 |
| BseMI | GCAATG | 1 cut(s) | 2681 |
| BseMII | CTCAG | 3 cut(s) | 468, 2607, 3075 |
| BseNI | ACTGG | 4 cut(s) | 1167, 2517, 2547, 3114 |
| BseRI | GAGGAG | 2 cut(s) | 15, 2072 |
| BseSI | GKGCMC | 1 cut(s) | 2967 |
| BseXI | GCAGC | 4 cut(s) | 172, 291, 595, 3046 |
| BsgI | GTGCAG | 1 cut(s) | 627 |
| Bsh1236I | CGCG | 2 cut(s) | 3135, 3176 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2980 |
| BshFI | GGCC | 5 cut(s) | 809, 2067, 2628, 2732, 3021 |
| BshNI | GGYRCC | 1 cut(s) | 2664 |
| BshVI | ATCGAT | 1 cut(s) | 3122 |
| BsiEI | CGRYCG | 1 cut(s) | 2980 |
| BsiHKAI | GWGCWC | 4 cut(s) | 8, 17, 2823, 3174 |
| BsiHKCI | CYCGRG | 2 cut(s) | 3035, 3050 |
| BsiSI | CCGG | 4 cut(s) | 2462, 2687, 3006, 3018 |
| BslFI | GGGAC | 1 cut(s) | 2999 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 846, 1465, 1781, 2901, 3136, 3204 |
| BsmAI | GTCTC | 6 cut(s) | 732, 1145, 1799, 2012, 2225, 3147 |
| BsmBI | CGTCTC | 1 cut(s) | 3147 |
| BsmFI | GGGAC | 1 cut(s) | 2999 |
| BsmI | GAATGC | 4 cut(s) | 284, 1070, 2497, 2564 |
| BsnI | GGCC | 5 cut(s) | 809, 2067, 2628, 2732, 3021 |
| Bso31I | GGTCTC | 1 cut(s) | 1145 |
| BsoBI | CYCGRG | 2 cut(s) | 3035, 3050 |
| Bsp1286I | GDGCHC | 7 cut(s) | 8, 17, 1169, 2823, 2967, 3049, 3174 |
| Bsp68I | TCGCGA | 1 cut(s) | 3176 |
| BspANI | GGCC | 5 cut(s) | 809, 2067, 2628, 2732, 3021 |
| BspCNI | CTCAG | 3 cut(s) | 467, 2608, 3076 |
| BspDI | ATCGAT | 1 cut(s) | 3122 |
| BspFNI | CGCG | 2 cut(s) | 3135, 3176 |
| BspHI | TCATGA | 2 cut(s) | 379, 826 |
| BspLI | GGNNCC | 3 cut(s) | 835, 2666, 2942 |
| BspMI | ACCTGC | 1 cut(s) | 541 |
| BspPI | GGATC | 6 cut(s) | 134, 320, 2523, 2805, 2935, 2948 |
| BspQI | GCTCTTC | 1 cut(s) | 22 |
| BspT107I | GGYRCC | 1 cut(s) | 2664 |
| BspTNI | GGTCTC | 1 cut(s) | 1145 |
| BsrBI | CCGCTC | 2 cut(s) | 680, 2969 |
| BsrDI | GCAATG | 1 cut(s) | 2681 |
| BsrI | ACTGG | 4 cut(s) | 1167, 2517, 2547, 3114 |
| BssECI | CCNNGG | 4 cut(s) | 26, 2123, 2895, 3016 |
| BssNI | GRCGYC | 3 cut(s) | 621, 1539, 3090 |
| BssSI | CACGAG | 2 cut(s) | 699, 2960 |
| BssT1I | CCWWGG | 2 cut(s) | 2123, 2895 |
| Bst2BI | CACGAG | 2 cut(s) | 699, 2960 |
| Bst2UI | CCWGG | 1 cut(s) | 1506 |
| Bst4CI | ACNGT | 5 cut(s) | 301, 1205, 1423, 3070, 3100 |
| Bst6I | CTCTTC | 7 cut(s) | 22, 399, 1053, 1177, 1219, 1281, 2436 |
| BstACI | GRCGYC | 3 cut(s) | 621, 1539, 3090 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 182, 1453 |
| BstBAI | YACGTR | 2 cut(s) | 1646, 2986 |
| BstC8I | GCNNGC | 9 cut(s) | 1511, 2138, 2630, 2672, 2967, 2971, 3057, 3174, 3178 |
| BstDEI | CTNAG | 6 cut(s) | 454, 1190, 1595, 2519, 2616, 3084 |
| BstEII | GGTNACC | 1 cut(s) | 1082 |
| BstF5I | GGATG | 4 cut(s) | 142, 622, 2336, 2390 |
| BstFNI | CGCG | 2 cut(s) | 3135, 3176 |
| BstHHI | GCGC | 4 cut(s) | 1515, 2756, 2994, 3135 |
| BstMAI | GTCTC | 6 cut(s) | 732, 1145, 1799, 2012, 2225, 3147 |
| BstMCI | CGRYCG | 1 cut(s) | 2980 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 12, 182, 1453, 1510, 2979, 3182 |
| BstNI | CCWGG | 1 cut(s) | 1506 |
| BstNSI | RCATGY | 2 cut(s) | 1927, 2140 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 1716, 1851, 3071 |
| BstPI | GGTNACC | 1 cut(s) | 1082 |
| BstSCI | CCNGG | 2 cut(s) | 1504, 3016 |
| BstSFI | CTRYAG | 1 cut(s) | 1776 |
| BstSLI | GKGCMC | 1 cut(s) | 2967 |
| BstUI | CGCG | 2 cut(s) | 3135, 3176 |
| BstV1I | GCAGC | 4 cut(s) | 172, 291, 595, 3046 |
| BstV2I | GAAGAC | 4 cut(s) | 1441, 1542, 1970, 2183 |
| BstX2I | RGATCY | 6 cut(s) | 1186, 1409, 1801, 2014, 2515, 2940 |
| BstYI | RGATCY | 6 cut(s) | 1186, 1409, 1801, 2014, 2515, 2940 |
| Bsu15I | ATCGAT | 1 cut(s) | 3122 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3084 |
| BsuI | GTATCC | 1 cut(s) | 61 |
| BsuRI | GGCC | 5 cut(s) | 809, 2067, 2628, 2732, 3021 |
| BsuTUI | ATCGAT | 1 cut(s) | 3122 |
| BtrI | CACGTC | 1 cut(s) | 1549 |
| BtsCI | GGATG | 4 cut(s) | 142, 622, 2336, 2390 |
| BtsI | GCAGTG | 5 cut(s) | 99, 1645, 1993, 2206, 3029 |
| BtsIMutI | CAGTG | 7 cut(s) | 99, 1210, 1645, 1993, 2206, 2554, 3029 |
| BtuMI | TCGCGA | 1 cut(s) | 3176 |
| BveI | ACCTGC | 1 cut(s) | 541 |
| Cac8I | GCNNGC | 9 cut(s) | 1511, 2138, 2630, 2672, 2967, 2971, 3057, 3174, 3178 |
| CciI | TCATGA | 2 cut(s) | 379, 826 |
| CfoI | GCGC | 4 cut(s) | 1515, 2756, 2994, 3135 |
| Cfr13I | GGNCC | 2 cut(s) | 807, 2065 |
| ClaI | ATCGAT | 1 cut(s) | 3122 |
| Csp6I | GTAC | 5 cut(s) | 338, 1160, 1355, 1643, 3107 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 576, 611 |
| CviQI | GTAC | 5 cut(s) | 338, 1160, 1355, 1643, 3107 |
| DdeI | CTNAG | 6 cut(s) | 454, 1190, 1595, 2519, 2616, 3084 |
| DraI | TTTAAA | 3 cut(s) | 1633, 2842, 2887 |
| DraIII | CACNNNGTG | 1 cut(s) | 2989 |
| EaeI | YGGCCR | 3 cut(s) | 2626, 2730, 3019 |
| Eam1104I | CTCTTC | 7 cut(s) | 22, 399, 1053, 1177, 1219, 1281, 2436 |
| EarI | CTCTTC | 7 cut(s) | 22, 399, 1053, 1177, 1219, 1281, 2436 |
| EciI | GGCGGA | 1 cut(s) | 1472 |
| Ecl136II | GAGCTC | 2 cut(s) | 15, 3172 |
| Eco130I | CCWWGG | 2 cut(s) | 2123, 2895 |
| Eco24I | GRGCYC | 4 cut(s) | 17, 1169, 3049, 3174 |
| Eco31I | GGTCTC | 1 cut(s) | 1145 |
| Eco32I | GATATC | 2 cut(s) | 2860, 3120 |
| Eco53kI | GAGCTC | 2 cut(s) | 15, 3172 |
| Eco57I | CTGAAG | 3 cut(s) | 1034, 1110, 2660 |
| Eco72I | CACGTG | 1 cut(s) | 2986 |
| Eco81I | CCTNAGG | 1 cut(s) | 3084 |
| Eco88I | CYCGRG | 2 cut(s) | 3035, 3050 |
| Eco91I | GGTNACC | 1 cut(s) | 1082 |
| EcoICRI | GAGCTC | 2 cut(s) | 15, 3172 |
| EcoO65I | GGTNACC | 1 cut(s) | 1082 |
| EcoRI | GAATTC | 3 cut(s) | 270, 463, 2876 |
| EcoRII | CCWGG | 1 cut(s) | 1504 |
| EcoRV | GATATC | 2 cut(s) | 2860, 3120 |
| EcoT14I | CCWWGG | 2 cut(s) | 2123, 2895 |
| EcoT22I | ATGCAT | 2 cut(s) | 238, 284 |
| EcoT38I | GRGCYC | 4 cut(s) | 17, 1169, 3049, 3174 |
| ErhI | CCWWGG | 2 cut(s) | 2123, 2895 |
| Esp3I | CGTCTC | 1 cut(s) | 3147 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1086, 1118 |
| FaqI | GGGAC | 1 cut(s) | 2999 |
| FauI | CCCGC | 4 cut(s) | 644, 2974, 3010, 3158 |
| FbaI | TGATCA | 1 cut(s) | 1359 |
| Fnu4HI | GCNGC | 6 cut(s) | 186, 305, 444, 584, 2668, 3060 |
| FokI | GGATG | 4 cut(s) | 149, 629, 2323, 2397 |
| FriOI | GRGCYC | 4 cut(s) | 17, 1169, 3049, 3174 |
| Fsp4HI | GCNGC | 6 cut(s) | 186, 305, 444, 584, 2668, 3060 |
| FspBI | CTAG | 7 cut(s) | 560, 972, 1220, 1277, 1304, 2481, 2637 |
| GlaI | GCGC | 4 cut(s) | 1514, 2755, 2993, 3134 |
| GluI | GCNGC | 6 cut(s) | 186, 305, 444, 584, 2668, 3060 |
| GsuI | CTGGAG | 2 cut(s) | 156, 3113 |
| HaeIII | GGCC | 5 cut(s) | 809, 2067, 2628, 2732, 3021 |
| HapII | CCGG | 4 cut(s) | 2462, 2687, 3006, 3018 |
| HhaI | GCGC | 4 cut(s) | 1515, 2756, 2994, 3135 |
| Hin1I | GRCGYC | 3 cut(s) | 621, 1539, 3090 |
| Hin6I | GCGC | 4 cut(s) | 1513, 2754, 2992, 3133 |
| HinP1I | GCGC | 4 cut(s) | 1513, 2754, 2992, 3133 |
| HincII | GTYRAC | 5 cut(s) | 243, 1618, 2786, 3148, 3189 |
| HindII | GTYRAC | 5 cut(s) | 243, 1618, 2786, 3148, 3189 |
| HindIII | AAGCTT | 4 cut(s) | 2039, 2252, 2300, 2672 |
| HpaII | CCGG | 4 cut(s) | 2462, 2687, 3006, 3018 |
| HphI | GGTGA | 4 cut(s) | 12, 74, 2391, 2884 |
| Hpy166II | GTNNAC | 8 cut(s) | 243, 761, 1618, 1643, 2177, 2786, 3148, 3189 |
| Hpy188I | TCNGA | 4 cut(s) | 334, 469, 2679, 2977 |
| Hpy8I | GTNNAC | 8 cut(s) | 243, 761, 1618, 1643, 2177, 2786, 3148, 3189 |
| Hpy99I | CGWCG | 7 cut(s) | 3077, 3095, 3104, 3107, 3161, 3164, 3203 |
| HpyAV | CCTTC | 8 cut(s) | 411, 731, 824, 833, 1012, 1925, 2138, 2755 |
| HpyCH4III | ACNGT | 5 cut(s) | 301, 1205, 1423, 3070, 3100 |
| HpyCH4IV | ACGT | 8 cut(s) | 245, 621, 1539, 1548, 1645, 2845, 2985, 3090 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 12, 182, 1453, 1510, 2979, 3182 |
| HpyF3I | CTNAG | 6 cut(s) | 454, 1190, 1595, 2519, 2616, 3084 |
| HpySE526I | ACGT | 8 cut(s) | 245, 621, 1539, 1548, 1645, 2845, 2985, 3090 |
| Hsp92I | GRCGYC | 3 cut(s) | 621, 1539, 3090 |
| HspAI | GCGC | 4 cut(s) | 1513, 2754, 2992, 3133 |
| Ksp22I | TGATCA | 1 cut(s) | 1359 |
| LguI | GCTCTTC | 1 cut(s) | 22 |
| LmnI | GCTCC | 8 cut(s) | 833, 1461, 2689, 2955, 2978, 3008, 3132, 3169 |
| Lsp1109I | GCAGC | 4 cut(s) | 172, 291, 595, 3046 |
| LweI | GCATC | 7 cut(s) | 245, 545, 1735, 1870, 2083, 2631, 3114 |
| MaeI | CTAG | 7 cut(s) | 560, 972, 1220, 1277, 1304, 2481, 2637 |
| MaeII | ACGT | 8 cut(s) | 245, 621, 1539, 1548, 1645, 2845, 2985, 3090 |
| MaeIII | GTNAC | 7 cut(s) | 860, 1082, 1232, 1345, 2397, 2453, 2522 |
| MbiI | CCGCTC | 2 cut(s) | 680, 2969 |
| MfeI | CAATTG | 2 cut(s) | 189, 2130 |
| MflI | RGATCY | 6 cut(s) | 1186, 1409, 1801, 2014, 2515, 2940 |
| MhlI | GDGCHC | 7 cut(s) | 8, 17, 1169, 2823, 2967, 3049, 3174 |
| MlyI | GAGTC | 4 cut(s) | 734, 1011, 1595, 2405 |
| MmeI | TCCRAC | 2 cut(s) | 544, 2720 |
| Mph1103I | ATGCAT | 2 cut(s) | 238, 284 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1070, 1098, 1298, 2649 |
| MslI | CAYNNNNRTG | 1 cut(s) | 2826 |
| MspA1I | CMGCKG | 1 cut(s) | 1062 |
| MspI | CCGG | 4 cut(s) | 2462, 2687, 3006, 3018 |
| MspR9I | CCNGG | 2 cut(s) | 1506, 3018 |
| MunI | CAATTG | 2 cut(s) | 189, 2130 |
| Mva1269I | GAATGC | 4 cut(s) | 284, 1070, 2497, 2564 |
| MvaI | CCWGG | 1 cut(s) | 1506 |
| MvnI | CGCG | 2 cut(s) | 3135, 3176 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 12, 182, 1453, 1510, 2979, 3182 |
| NciI | CCSGG | 1 cut(s) | 3018 |
| NlaIV | GGNNCC | 3 cut(s) | 835, 2666, 2942 |
| NmeAIII | GCCGAG | 1 cut(s) | 1511 |
| NmuCI | GTSAC | 4 cut(s) | 860, 2397, 2453, 2522 |
| NruI | TCGCGA | 1 cut(s) | 3176 |
| NsiI | ATGCAT | 2 cut(s) | 238, 284 |
| NspI | RCATGY | 2 cut(s) | 1927, 2140 |
| PaeI | GCATGC | 1 cut(s) | 2140 |
| PaeR7I | CTCGAG | 1 cut(s) | 3050 |
| PagI | TCATGA | 2 cut(s) | 379, 826 |
| PciSI | GCTCTTC | 1 cut(s) | 22 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 1545, 3096, 3099, 3156 |
| PctI | GAATGC | 4 cut(s) | 284, 1070, 2497, 2564 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1070, 1098, 1298, 2649 |
| PfeI | GAWTC | 8 cut(s) | 120, 197, 482, 693, 1043, 1609, 2741, 3040 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1465 |
| PkrI | GCNGC | 6 cut(s) | 187, 306, 445, 585, 2669, 3061 |
| Ple19I | CGATCG | 1 cut(s) | 2980 |
| PleI | GAGTC | 4 cut(s) | 734, 1010, 1595, 2404 |
| PmaCI | CACGTG | 1 cut(s) | 2986 |
| PmlI | CACGTG | 1 cut(s) | 2986 |
| PpsI | GAGTC | 4 cut(s) | 734, 1010, 1595, 2404 |
| Ppu21I | YACGTR | 2 cut(s) | 1646, 2986 |
| PshAI | GACNNNNGTC | 3 cut(s) | 1716, 1851, 3071 |
| Psp124BI | GAGCTC | 2 cut(s) | 17, 3174 |
| Psp6I | CCWGG | 1 cut(s) | 1504 |
| PspCI | CACGTG | 1 cut(s) | 2986 |
| PspEI | GGTNACC | 1 cut(s) | 1082 |
| PspGI | CCWGG | 1 cut(s) | 1504 |
| PspN4I | GGNNCC | 3 cut(s) | 835, 2666, 2942 |
| PspPI | GGNCC | 2 cut(s) | 807, 2065 |
| PspXI | VCTCGAGB | 1 cut(s) | 3050 |
| PsuI | RGATCY | 6 cut(s) | 1186, 1409, 1801, 2014, 2515, 2940 |
| PvuI | CGATCG | 1 cut(s) | 2980 |
| PvuII | CAGCTG | 1 cut(s) | 1062 |
| RruI | TCGCGA | 1 cut(s) | 3176 |
| RsaI | GTAC | 5 cut(s) | 339, 1161, 1356, 1644, 3108 |
| RsaNI | GTAC | 5 cut(s) | 338, 1160, 1355, 1643, 3107 |
| RseI | CAYNNNNRTG | 1 cut(s) | 2826 |
| SacI | GAGCTC | 2 cut(s) | 17, 3174 |
| SapI | GCTCTTC | 1 cut(s) | 22 |
| SatI | GCNGC | 6 cut(s) | 186, 305, 444, 584, 2668, 3060 |
| Sau96I | GGNCC | 2 cut(s) | 807, 2065 |
| ScaI | AGTACT | 2 cut(s) | 1161, 1356 |
| SchI | GAGTC | 4 cut(s) | 734, 1011, 1595, 2405 |
| ScrFI | CCNGG | 2 cut(s) | 1506, 3018 |
| SduI | GDGCHC | 7 cut(s) | 8, 17, 1169, 2823, 2967, 3049, 3174 |
| SfaNI | GCATC | 7 cut(s) | 245, 545, 1735, 1870, 2083, 2631, 3114 |
| SfcI | CTRYAG | 1 cut(s) | 1776 |
| Sfr274I | CTCGAG | 1 cut(s) | 3050 |
| SlaI | CTCGAG | 1 cut(s) | 3050 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 2826 |
| SmlI | CTYRAG | 4 cut(s) | 574, 1951, 2164, 3050 |
| SmoI | CTYRAG | 4 cut(s) | 574, 1951, 2164, 3050 |
| SphI | GCATGC | 1 cut(s) | 2140 |
| SspI | AATATT | 3 cut(s) | 917, 1299, 2834 |
| SspMI | CTAG | 7 cut(s) | 560, 972, 1220, 1277, 1304, 2481, 2637 |
| SstI | GAGCTC | 2 cut(s) | 17, 3174 |
| StyD4I | CCNGG | 2 cut(s) | 1504, 3016 |
| StyI | CCWWGG | 2 cut(s) | 2123, 2895 |
| TaaI | ACNGT | 5 cut(s) | 301, 1205, 1423, 3070, 3100 |
| TaiI | ACGT | 8 cut(s) | 248, 624, 1542, 1551, 1648, 2848, 2988, 3093 |
| TatI | WGTACW | 2 cut(s) | 1159, 1354 |
| TauI | GCSGC | 2 cut(s) | 446, 2670 |
| TfiI | GAWTC | 8 cut(s) | 120, 197, 482, 693, 1043, 1609, 2741, 3040 |
| TscAI | CASTG | 7 cut(s) | 106, 1210, 1645, 1993, 2206, 2554, 3036 |
| TseFI | GTSAC | 4 cut(s) | 860, 2397, 2453, 2522 |
| TseI | GCWGC | 4 cut(s) | 185, 304, 583, 3059 |
| Tsp45I | GTSAC | 4 cut(s) | 860, 2397, 2453, 2522 |
| TspGWI | ACGGA | 5 cut(s) | 733, 1557, 2933, 3130, 3165 |
| TspRI | CASTG | 7 cut(s) | 106, 1210, 1645, 1993, 2206, 2554, 3036 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1465 |
| XapI | RAATTY | 9 cut(s) | 270, 463, 567, 704, 710, 1028, 1242, 2578, 2876 |
| XbaI | TCTAGA | 2 cut(s) | 1276, 2636 |
| XceI | RCATGY | 2 cut(s) | 1927, 2140 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 938, 2703 |
| XhoI | CTCGAG | 1 cut(s) | 3050 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1070, 1098, 1298, 2649 |
| XspI | CTAG | 7 cut(s) | 560, 972, 1220, 1277, 1304, 2481, 2637 |
| ZraI | GACGTC | 3 cut(s) | 622, 1540, 3091 |
| ZrmI | AGTACT | 2 cut(s) | 1161, 1356 |
| Zsp2I | ATGCAT | 2 cut(s) | 238, 284 |