TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| C-JID | PF20160 | 19 - 157 | 3.5e-16 | C-JID domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 364 |
| AclWI | GGATC | 1 cut(s) | 472 |
| AcsI | RAATTY | 2 cut(s) | 69, 243 |
| AfaI | GTAC | 2 cut(s) | 183, 455 |
| AflII | CTTAAG | 1 cut(s) | 11 |
| AgsI | TTSAA | 3 cut(s) | 54, 85, 266 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 196 |
| AjnI | CCWGG | 1 cut(s) | 58 |
| AluBI | AGCT | 3 cut(s) | 43, 401, 475 |
| AluI | AGCT | 3 cut(s) | 43, 401, 475 |
| Alw21I | GWGCWC | 2 cut(s) | 45, 462 |
| AlwI | GGATC | 1 cut(s) | 472 |
| Ama87I | CYCGRG | 1 cut(s) | 396 |
| AoxI | GGCC | 1 cut(s) | 323 |
| ApeKI | GCWGC | 2 cut(s) | 487, 490 |
| ApoI | RAATTY | 2 cut(s) | 69, 243 |
| AspLEI | GCGC | 1 cut(s) | 366 |
| AspS9I | GGNCC | 2 cut(s) | 324, 442 |
| AsuC2I | CCSGG | 1 cut(s) | 446 |
| AsuHPI | GGTGA | 2 cut(s) | 296, 439 |
| AsuII | TTCGAA | 1 cut(s) | 387 |
| AvaI | CYCGRG | 1 cut(s) | 396 |
| AvaII | GGWCC | 1 cut(s) | 442 |
| BaeGI | GKGCMC | 1 cut(s) | 451 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 332, 365 |
| BanII | GRGCYC | 1 cut(s) | 45 |
| Bbv12I | GWGCWC | 2 cut(s) | 45, 462 |
| BbvI | GCAGC | 2 cut(s) | 499, 502 |
| BceAI | ACGGC | 1 cut(s) | 188 |
| BciT130I | CCWGG | 1 cut(s) | 60 |
| BcnI | CCSGG | 1 cut(s) | 446 |
| BfmI | CTRYAG | 1 cut(s) | 402 |
| BfrI | CTTAAG | 1 cut(s) | 11 |
| BglII | AGATCT | 1 cut(s) | 226 |
| BisI | GCNGC | 2 cut(s) | 488, 491 |
| BlsI | GCNGC | 2 cut(s) | 489, 492 |
| Bme1390I | CCNGG | 2 cut(s) | 60, 446 |
| Bme18I | GGWCC | 1 cut(s) | 442 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 196 |
| BmeT110I | CYCGRG | 1 cut(s) | 396 |
| BmgT120I | GGNCC | 2 cut(s) | 324, 442 |
| BmiI | GGNNCC | 2 cut(s) | 260, 443 |
| BmrFI | CCNGG | 2 cut(s) | 60, 446 |
| BmrI | ACTGGG | 1 cut(s) | 321 |
| BmsI | GCATC | 2 cut(s) | 121, 407 |
| BmuI | ACTGGG | 1 cut(s) | 321 |
| BpmI | CTGGAG | 1 cut(s) | 29 |
| Bpu14I | TTCGAA | 1 cut(s) | 387 |
| BpuEI | CTTGAG | 1 cut(s) | 171 |
| BpuMI | CCSGG | 1 cut(s) | 446 |
| BsaBI | GATNNNNATC | 1 cut(s) | 225 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 93, 123 |
| Bse1I | ACTGG | 3 cut(s) | 46, 327, 341 |
| Bse3DI | GCAATG | 1 cut(s) | 373 |
| Bse8I | GATNNNNATC | 1 cut(s) | 225 |
| BseBI | CCWGG | 1 cut(s) | 60 |
| BseGI | GGATG | 1 cut(s) | 136 |
| BseJI | GATNNNNATC | 1 cut(s) | 225 |
| BseMI | GCAATG | 1 cut(s) | 373 |
| BseNI | ACTGG | 3 cut(s) | 46, 327, 341 |
| BseRI | GAGGAG | 1 cut(s) | 522 |
| BseSI | GKGCMC | 1 cut(s) | 451 |
| BseXI | GCAGC | 2 cut(s) | 499, 502 |
| Bsh1236I | CGCG | 1 cut(s) | 364 |
| BshFI | GGCC | 1 cut(s) | 325 |
| BsiHKAI | GWGCWC | 2 cut(s) | 45, 462 |
| BsiHKCI | CYCGRG | 1 cut(s) | 396 |
| BsiSI | CCGG | 1 cut(s) | 445 |
| BsnI | GGCC | 1 cut(s) | 325 |
| BsoBI | CYCGRG | 1 cut(s) | 396 |
| Bsp119I | TTCGAA | 1 cut(s) | 387 |
| Bsp1286I | GDGCHC | 3 cut(s) | 45, 451, 462 |
| Bsp143I | GATC | 3 cut(s) | 226, 301, 477 |
| BspANI | GGCC | 1 cut(s) | 325 |
| BspFNI | CGCG | 1 cut(s) | 364 |
| BspHI | TCATGA | 1 cut(s) | 331 |
| BspLI | GGNNCC | 2 cut(s) | 260, 443 |
| BspPI | GGATC | 1 cut(s) | 472 |
| BspQI | GCTCTTC | 1 cut(s) | 465 |
| BspT104I | TTCGAA | 1 cut(s) | 387 |
| BspTI | CTTAAG | 1 cut(s) | 11 |
| BsrDI | GCAATG | 1 cut(s) | 373 |
| BsrI | ACTGG | 3 cut(s) | 46, 327, 341 |
| BssMI | GATC | 3 cut(s) | 226, 301, 477 |
| Bst2UI | CCWGG | 1 cut(s) | 60 |
| Bst4CI | ACNGT | 2 cut(s) | 274, 453 |
| Bst6I | CTCTTC | 1 cut(s) | 465 |
| BstAFI | CTTAAG | 1 cut(s) | 11 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 417 |
| BstBI | TTCGAA | 1 cut(s) | 387 |
| BstF5I | GGATG | 1 cut(s) | 136 |
| BstFNI | CGCG | 1 cut(s) | 364 |
| BstHHI | GCGC | 1 cut(s) | 366 |
| BstKTI | GATC | 3 cut(s) | 229, 304, 480 |
| BstMBI | GATC | 3 cut(s) | 226, 301, 477 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 170, 417 |
| BstNI | CCWGG | 1 cut(s) | 60 |
| BstNSI | RCATGY | 1 cut(s) | 138 |
| BstSCI | CCNGG | 2 cut(s) | 58, 444 |
| BstSFI | CTRYAG | 1 cut(s) | 402 |
| BstSLI | GKGCMC | 1 cut(s) | 451 |
| BstUI | CGCG | 1 cut(s) | 364 |
| BstV1I | GCAGC | 2 cut(s) | 499, 502 |
| BstX2I | RGATCY | 1 cut(s) | 226 |
| BstYI | RGATCY | 1 cut(s) | 226 |
| BsuRI | GGCC | 1 cut(s) | 325 |
| BtsCI | GGATG | 1 cut(s) | 136 |
| BtsIMutI | CAGTG | 1 cut(s) | 449 |
| CciI | TCATGA | 1 cut(s) | 331 |
| CfoI | GCGC | 1 cut(s) | 366 |
| Cfr13I | GGNCC | 2 cut(s) | 324, 442 |
| Csp6I | GTAC | 2 cut(s) | 182, 454 |
| CviAII | CATG | 2 cut(s) | 135, 332 |
| CviJI | RGCY | 5 cut(s) | 43, 325, 401, 475, 513 |
| CviKI_1 | RGCY | 5 cut(s) | 43, 325, 401, 475, 513 |
| CviQI | GTAC | 2 cut(s) | 182, 454 |
| DpnI | GATC | 3 cut(s) | 228, 303, 479 |
| DpnII | GATC | 3 cut(s) | 226, 301, 477 |
| DriI | GACNNNNNGTC | 1 cut(s) | 196 |
| Eam1104I | CTCTTC | 1 cut(s) | 465 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 196 |
| EarI | CTCTTC | 1 cut(s) | 465 |
| Ecl136II | GAGCTC | 1 cut(s) | 43 |
| Eco24I | GRGCYC | 1 cut(s) | 45 |
| Eco47I | GGWCC | 1 cut(s) | 442 |
| Eco53kI | GAGCTC | 1 cut(s) | 43 |
| Eco88I | CYCGRG | 1 cut(s) | 396 |
| EcoICRI | GAGCTC | 1 cut(s) | 43 |
| EcoRII | CCWGG | 1 cut(s) | 58 |
| EcoT22I | ATGCAT | 2 cut(s) | 136, 422 |
| EcoT38I | GRGCYC | 1 cut(s) | 45 |
| FaeI | CATG | 2 cut(s) | 138, 335 |
| FaiI | YATR | 4 cut(s) | 136, 333, 422, 516 |
| FatI | CATG | 2 cut(s) | 134, 331 |
| Fnu4HI | GCNGC | 2 cut(s) | 488, 491 |
| FokI | GGATG | 1 cut(s) | 143 |
| FriOI | GRGCYC | 1 cut(s) | 45 |
| Fsp4HI | GCNGC | 2 cut(s) | 488, 491 |
| GlaI | GCGC | 1 cut(s) | 365 |
| GluI | GCNGC | 2 cut(s) | 488, 491 |
| GsuI | CTGGAG | 1 cut(s) | 29 |
| HaeIII | GGCC | 1 cut(s) | 325 |
| HapII | CCGG | 1 cut(s) | 445 |
| HhaI | GCGC | 1 cut(s) | 366 |
| Hin1II | CATG | 2 cut(s) | 138, 335 |
| Hin6I | GCGC | 1 cut(s) | 364 |
| HinP1I | GCGC | 1 cut(s) | 364 |
| HpaII | CCGG | 1 cut(s) | 445 |
| HphI | GGTGA | 2 cut(s) | 296, 439 |
| Hpy188I | TCNGA | 2 cut(s) | 130, 301 |
| Hpy188III | TCNNGA | 5 cut(s) | 74, 188, 209, 230, 332 |
| HpyAV | CCTTC | 3 cut(s) | 135, 260, 394 |
| HpyCH4III | ACNGT | 2 cut(s) | 274, 453 |
| HpyCH4IV | ACGT | 1 cut(s) | 377 |
| HpyCH4V | TGCA | 2 cut(s) | 134, 420 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 170, 417 |
| HpySE526I | ACGT | 1 cut(s) | 377 |
| Hsp92II | CATG | 2 cut(s) | 138, 335 |
| HspAI | GCGC | 1 cut(s) | 364 |
| Kzo9I | GATC | 3 cut(s) | 226, 301, 477 |
| LguI | GCTCTTC | 1 cut(s) | 465 |
| LmnI | GCTCC | 1 cut(s) | 48 |
| Lsp1109I | GCAGC | 2 cut(s) | 499, 502 |
| LweI | GCATC | 2 cut(s) | 121, 407 |
| MaeII | ACGT | 1 cut(s) | 377 |
| MaeIII | GTNAC | 2 cut(s) | 109, 120 |
| MalI | GATC | 3 cut(s) | 228, 303, 479 |
| MboI | GATC | 3 cut(s) | 226, 301, 477 |
| MboII | GAAGA | 2 cut(s) | 442, 482 |
| MflI | RGATCY | 1 cut(s) | 226 |
| MhlI | GDGCHC | 3 cut(s) | 45, 451, 462 |
| MluCI | AATT | 5 cut(s) | 54, 69, 177, 243, 290 |
| MmeI | TCCRAC | 1 cut(s) | 236 |
| MnlI | CCTC | 5 cut(s) | 36, 95, 195, 500, 503 |
| Mph1103I | ATGCAT | 2 cut(s) | 136, 422 |
| MseI | TTAA | 2 cut(s) | 12, 36 |
| MslI | CAYNNNNRTG | 1 cut(s) | 425 |
| MspCI | CTTAAG | 1 cut(s) | 11 |
| MspI | CCGG | 1 cut(s) | 445 |
| MspR9I | CCNGG | 2 cut(s) | 60, 446 |
| MvaI | CCWGG | 1 cut(s) | 60 |
| MvnI | CGCG | 1 cut(s) | 364 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 170, 417 |
| NciI | CCSGG | 1 cut(s) | 446 |
| NdeII | GATC | 3 cut(s) | 226, 301, 477 |
| NlaIII | CATG | 2 cut(s) | 138, 335 |
| NlaIV | GGNNCC | 2 cut(s) | 260, 443 |
| NsiI | ATGCAT | 2 cut(s) | 136, 422 |
| NspI | RCATGY | 1 cut(s) | 138 |
| NspV | TTCGAA | 1 cut(s) | 387 |
| PaeR7I | CTCGAG | 1 cut(s) | 396 |
| PagI | TCATGA | 1 cut(s) | 331 |
| PciSI | GCTCTTC | 1 cut(s) | 465 |
| PfoI | TCCNGGA | 1 cut(s) | 58 |
| PkrI | GCNGC | 2 cut(s) | 489, 492 |
| Psp124BI | GAGCTC | 1 cut(s) | 45 |
| Psp6I | CCWGG | 1 cut(s) | 58 |
| PspGI | CCWGG | 1 cut(s) | 58 |
| PspN4I | GGNNCC | 2 cut(s) | 260, 443 |
| PspPI | GGNCC | 2 cut(s) | 324, 442 |
| PspXI | VCTCGAGB | 1 cut(s) | 396 |
| PsuI | RGATCY | 1 cut(s) | 226 |
| RsaI | GTAC | 2 cut(s) | 183, 455 |
| RsaNI | GTAC | 2 cut(s) | 182, 454 |
| RseI | CAYNNNNRTG | 1 cut(s) | 425 |
| SacI | GAGCTC | 1 cut(s) | 45 |
| SapI | GCTCTTC | 1 cut(s) | 465 |
| SaqAI | TTAA | 2 cut(s) | 12, 36 |
| SatI | GCNGC | 2 cut(s) | 488, 491 |
| Sau3AI | GATC | 3 cut(s) | 226, 301, 477 |
| Sau96I | GGNCC | 2 cut(s) | 324, 442 |
| ScrFI | CCNGG | 2 cut(s) | 60, 446 |
| SduI | GDGCHC | 3 cut(s) | 45, 451, 462 |
| SfaNI | GCATC | 2 cut(s) | 121, 407 |
| SfcI | CTRYAG | 1 cut(s) | 402 |
| Sfr274I | CTCGAG | 1 cut(s) | 396 |
| SfuI | TTCGAA | 1 cut(s) | 387 |
| SinI | GGWCC | 1 cut(s) | 442 |
| SlaI | CTCGAG | 1 cut(s) | 396 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 425 |
| SmlI | CTYRAG | 3 cut(s) | 11, 186, 396 |
| SmoI | CTYRAG | 3 cut(s) | 11, 186, 396 |
| Sse9I | AATT | 5 cut(s) | 54, 69, 177, 243, 290 |
| SstI | GAGCTC | 1 cut(s) | 45 |
| StyD4I | CCNGG | 2 cut(s) | 58, 444 |
| TaaI | ACNGT | 2 cut(s) | 274, 453 |
| TaiI | ACGT | 1 cut(s) | 380 |
| TaqI | TCGA | 2 cut(s) | 387, 397 |
| TasI | AATT | 5 cut(s) | 54, 69, 177, 243, 290 |
| Tru1I | TTAA | 2 cut(s) | 12, 36 |
| Tru9I | TTAA | 2 cut(s) | 12, 36 |
| TscAI | CASTG | 1 cut(s) | 456 |
| TseI | GCWGC | 2 cut(s) | 487, 490 |
| TspGWI | ACGGA | 2 cut(s) | 186, 482 |
| TspRI | CASTG | 1 cut(s) | 456 |
| Vha464I | CTTAAG | 1 cut(s) | 11 |
| VpaK11BI | GGWCC | 1 cut(s) | 442 |
| XapI | RAATTY | 2 cut(s) | 69, 243 |
| XceI | RCATGY | 1 cut(s) | 138 |
| XhoI | CTCGAG | 1 cut(s) | 396 |
| Zsp2I | ATGCAT | 2 cut(s) | 136, 422 |