TMV resistance protein N-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 940 |
| AccB1I | GGYRCC | 1 cut(s) | 1799 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 140 |
| AccI | GTMKAC | 1 cut(s) | 1807 |
| AciI | CCGC | 7 cut(s) | 288, 816, 1466, 1697, 1740, 2186, 2653 |
| AclWI | GGATC | 3 cut(s) | 1754, 2249, 2663 |
| AcsI | RAATTY | 7 cut(s) | 516, 591, 693, 765, 1543, 2139, 2513 |
| AcuI | CTGAAG | 3 cut(s) | 329, 461, 2066 |
| AcvI | CACGTG | 1 cut(s) | 2384 |
| AdeI | CACNNNGTG | 1 cut(s) | 2107 |
| AfaI | GTAC | 3 cut(s) | 1353, 2024, 2122 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 140, 885, 1780, 2135, 2201 |
| AflIII | ACRYGT | 1 cut(s) | 1296 |
| AgeI | ACCGGT | 1 cut(s) | 1372 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1024 |
| AjnI | CCWGG | 4 cut(s) | 259, 910, 1408, 1612 |
| AluBI | AGCT | 6 cut(s) | 954, 1001, 1153, 1926, 1968, 2219 |
| AluI | AGCT | 6 cut(s) | 954, 1001, 1153, 1926, 1968, 2219 |
| Alw21I | GWGCWC | 2 cut(s) | 541, 1003 |
| Alw26I | GTCTC | 3 cut(s) | 335, 715, 2067 |
| Alw44I | GTGCAC | 1 cut(s) | 537 |
| AlwI | GGATC | 3 cut(s) | 1754, 2249, 2663 |
| Ama87I | CYCGRG | 1 cut(s) | 1939 |
| ApaLI | GTGCAC | 1 cut(s) | 537 |
| ApeKI | GCWGC | 8 cut(s) | 747, 1316, 1443, 1926, 1972, 2177, 2219, 2530 |
| ApoI | RAATTY | 7 cut(s) | 516, 591, 693, 765, 1543, 2139, 2513 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1577, 1609 |
| AseI | ATTAAT | 1 cut(s) | 1260 |
| AsiGI | ACCGGT | 1 cut(s) | 1372 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 234, 474, 1110, 1727, 2079 |
| AspLEI | GCGC | 1 cut(s) | 1269 |
| AspS9I | GGNCC | 4 cut(s) | 914, 1018, 1140, 1610 |
| AsuC2I | CCSGG | 2 cut(s) | 886, 2008 |
| AsuHPI | GGTGA | 3 cut(s) | 112, 475, 1387 |
| AvaI | CYCGRG | 1 cut(s) | 1939 |
| AvaII | GGWCC | 4 cut(s) | 914, 1018, 1140, 1610 |
| BaeGI | GKGCMC | 2 cut(s) | 541, 1804 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 296, 329 |
| BanI | GGYRCC | 1 cut(s) | 1799 |
| BanII | GRGCYC | 1 cut(s) | 1003 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 962, 994 |
| BauI | CACGAG | 1 cut(s) | 1637 |
| BbrPI | CACGTG | 1 cut(s) | 2384 |
| BbsI | GAAGAC | 1 cut(s) | 2638 |
| Bbv12I | GWGCWC | 2 cut(s) | 541, 1003 |
| BbvCI | CCTCAGC | 1 cut(s) | 1914 |
| BbvI | GCAGC | 8 cut(s) | 734, 1328, 1455, 1913, 1959, 2189, 2206, 2517 |
| BccI | CCATC | 9 cut(s) | 20, 427, 596, 847, 989, 1165, 1498, 1913, 2189 |
| BceAI | ACGGC | 1 cut(s) | 2213 |
| BciT130I | CCWGG | 4 cut(s) | 261, 912, 1410, 1614 |
| BclI | TGATCA | 2 cut(s) | 1213, 2427 |
| BcnI | CCSGG | 2 cut(s) | 886, 2008 |
| BcoDI | GTCTC | 3 cut(s) | 335, 715, 2067 |
| BfaI | CTAG | 2 cut(s) | 711, 1401 |
| BfmI | CTRYAG | 4 cut(s) | 177, 612, 1314, 2155 |
| BfuAI | ACCTGC | 1 cut(s) | 940 |
| BglII | AGATCT | 1 cut(s) | 1403 |
| BisI | GCNGC | 8 cut(s) | 748, 1317, 1444, 1927, 1973, 2178, 2220, 2531 |
| BlsI | GCNGC | 8 cut(s) | 749, 1318, 1445, 1928, 1974, 2179, 2221, 2532 |
| Bme1390I | CCNGG | 6 cut(s) | 261, 886, 912, 1410, 1614, 2008 |
| Bme18I | GGWCC | 4 cut(s) | 914, 1018, 1140, 1610 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1024 |
| BmeT110I | CYCGRG | 1 cut(s) | 1939 |
| BmgT120I | GGNCC | 4 cut(s) | 914, 1018, 1140, 1610 |
| BmiI | GGNNCC | 2 cut(s) | 1801, 2170 |
| BmrFI | CCNGG | 6 cut(s) | 261, 886, 912, 1410, 1614, 2008 |
| BmrI | ACTGGG | 4 cut(s) | 128, 1677, 1872, 2113 |
| BmsI | GCATC | 4 cut(s) | 189, 428, 1708, 2387 |
| BmuI | ACTGGG | 4 cut(s) | 128, 1677, 1872, 2113 |
| BpiI | GAAGAC | 1 cut(s) | 2638 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1914 |
| BpuEI | CTTGAG | 2 cut(s) | 392, 530 |
| BpuMI | CCSGG | 2 cut(s) | 886, 2008 |
| Bsa29I | ATCGAT | 1 cut(s) | 2658 |
| BsaAI | YACGTR | 1 cut(s) | 2384 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1212 |
| BsaJI | CCNNGG | 5 cut(s) | 260, 910, 1602, 2007, 2172 |
| BsaWI | WCCGGW | 2 cut(s) | 1020, 1372 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 140, 885, 1780, 2135, 2201 |
| Bse118I | RCCGGY | 1 cut(s) | 1372 |
| Bse1I | ACTGG | 8 cut(s) | 134, 626, 652, 1189, 1554, 1672, 1867, 2108 |
| Bse3DI | GCAATG | 2 cut(s) | 673, 2540 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1212 |
| BseBI | CCWGG | 4 cut(s) | 261, 912, 1410, 1614 |
| BseCI | ATCGAT | 1 cut(s) | 2658 |
| BseDI | CCNNGG | 5 cut(s) | 260, 910, 1602, 2007, 2172 |
| BseJI | GATNNNNATC | 1 cut(s) | 1212 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 140, 885, 1780, 2135, 2201 |
| BseMI | GCAATG | 2 cut(s) | 673, 2540 |
| BseMII | CTCAG | 5 cut(s) | 25, 448, 1905, 2564, 2573 |
| BseNI | ACTGG | 8 cut(s) | 134, 626, 652, 1189, 1554, 1672, 1867, 2108 |
| BseSI | GKGCMC | 2 cut(s) | 541, 1804 |
| BseXI | GCAGC | 8 cut(s) | 734, 1328, 1455, 1913, 1959, 2189, 2206, 2517 |
| BsgI | GTGCAG | 2 cut(s) | 910, 2489 |
| BshNI | GGYRCC | 1 cut(s) | 1799 |
| BshTI | ACCGGT | 1 cut(s) | 1372 |
| BshVI | ATCGAT | 1 cut(s) | 2658 |
| BsiHKAI | GWGCWC | 2 cut(s) | 541, 1003 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1939 |
| BsiSI | CCGG | 4 cut(s) | 885, 1021, 1373, 2007 |
| BslFI | GGGAC | 3 cut(s) | 347, 506, 1490 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 140, 885, 1780, 2135, 2201 |
| BsmAI | GTCTC | 3 cut(s) | 335, 715, 2067 |
| BsmBI | CGTCTC | 1 cut(s) | 2067 |
| BsmFI | GGGAC | 3 cut(s) | 347, 506, 1490 |
| BsmI | GAATGC | 2 cut(s) | 1729, 1994 |
| BsoBI | CYCGRG | 1 cut(s) | 1939 |
| Bsp1286I | GDGCHC | 3 cut(s) | 541, 1003, 1804 |
| Bsp143I | GATC | 9 cut(s) | 336, 480, 1213, 1403, 1746, 2254, 2427, 2655, 2659 |
| Bsp19I | CCATGG | 1 cut(s) | 1602 |
| BspACI | CCGC | 7 cut(s) | 288, 816, 1466, 1697, 1740, 2186, 2653 |
| BspCNI | CTCAG | 5 cut(s) | 24, 447, 1906, 2563, 2572 |
| BspDI | ATCGAT | 1 cut(s) | 2658 |
| BspHI | TCATGA | 1 cut(s) | 1336 |
| BspLI | GGNNCC | 2 cut(s) | 1801, 2170 |
| BspMAI | CTGCAG | 2 cut(s) | 1318, 2159 |
| BspMI | ACCTGC | 1 cut(s) | 940 |
| BspPI | GGATC | 3 cut(s) | 1754, 2249, 2663 |
| BspT107I | GGYRCC | 1 cut(s) | 1799 |
| BsrDI | GCAATG | 2 cut(s) | 673, 2540 |
| BsrFI | RCCGGY | 1 cut(s) | 1372 |
| BsrI | ACTGG | 8 cut(s) | 134, 626, 652, 1189, 1554, 1672, 1867, 2108 |
| BssAI | RCCGGY | 1 cut(s) | 1372 |
| BssECI | CCNNGG | 5 cut(s) | 260, 910, 1602, 2007, 2172 |
| BssMI | GATC | 9 cut(s) | 336, 480, 1213, 1403, 1746, 2254, 2427, 2655, 2659 |
| BssSI | CACGAG | 1 cut(s) | 1637 |
| BssT1I | CCWWGG | 1 cut(s) | 1602 |
| Bst2BI | CACGAG | 1 cut(s) | 1637 |
| Bst2UI | CCWGG | 4 cut(s) | 261, 912, 1410, 1614 |
| Bst6I | CTCTTC | 2 cut(s) | 795, 1031 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 208 |
| BstBAI | YACGTR | 1 cut(s) | 2384 |
| BstC8I | GCNNGC | 2 cut(s) | 1970, 2320 |
| BstDSI | CCRYGG | 1 cut(s) | 1602 |
| BstHHI | GCGC | 1 cut(s) | 1269 |
| BstKTI | GATC | 9 cut(s) | 339, 483, 1216, 1406, 1749, 2257, 2430, 2658, 2662 |
| BstMAI | GTCTC | 3 cut(s) | 335, 715, 2067 |
| BstMBI | GATC | 9 cut(s) | 336, 480, 1213, 1403, 1746, 2254, 2427, 2655, 2659 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 208, 888, 1440, 2225 |
| BstNI | CCWGG | 4 cut(s) | 261, 912, 1410, 1614 |
| BstNSI | RCATGY | 4 cut(s) | 72, 1300, 2226, 2322 |
| BstSCI | CCNGG | 6 cut(s) | 259, 884, 910, 1408, 1612, 2006 |
| BstSFI | CTRYAG | 4 cut(s) | 177, 612, 1314, 2155 |
| BstSLI | GKGCMC | 2 cut(s) | 541, 1804 |
| BstV1I | GCAGC | 8 cut(s) | 734, 1328, 1455, 1913, 1959, 2189, 2206, 2517 |
| BstV2I | GAAGAC | 1 cut(s) | 2638 |
| BstX2I | RGATCY | 1 cut(s) | 1403 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1667 |
| BstYI | RGATCY | 1 cut(s) | 1403 |
| Bsu15I | ATCGAT | 1 cut(s) | 2658 |
| BsuTUI | ATCGAT | 1 cut(s) | 2658 |
| BtgI | CCRYGG | 1 cut(s) | 1602 |
| BtsI | GCAGTG | 2 cut(s) | 898, 2164 |
| BtsIMutI | CAGTG | 8 cut(s) | 259, 633, 898, 1665, 1742, 2101, 2164, 2306 |
| BveI | ACCTGC | 1 cut(s) | 940 |
| Cac8I | GCNNGC | 2 cut(s) | 1970, 2320 |
| CciI | TCATGA | 1 cut(s) | 1336 |
| CfoI | GCGC | 1 cut(s) | 1269 |
| Cfr10I | RCCGGY | 1 cut(s) | 1372 |
| Cfr13I | GGNCC | 4 cut(s) | 914, 1018, 1140, 1610 |
| ClaI | ATCGAT | 1 cut(s) | 2658 |
| CseI | GACGC | 2 cut(s) | 629, 2311 |
| Csp6I | GTAC | 3 cut(s) | 1352, 2023, 2121 |
| CspAI | ACCGGT | 1 cut(s) | 1372 |
| CviQI | GTAC | 3 cut(s) | 1352, 2023, 2121 |
| DpnI | GATC | 9 cut(s) | 338, 482, 1215, 1405, 1748, 2256, 2429, 2657, 2661 |
| DpnII | GATC | 9 cut(s) | 336, 480, 1213, 1403, 1746, 2254, 2427, 2655, 2659 |
| DraIII | CACNNNGTG | 1 cut(s) | 2107 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1024 |
| Eam1104I | CTCTTC | 2 cut(s) | 795, 1031 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1024 |
| EarI | CTCTTC | 2 cut(s) | 795, 1031 |
| Ecl136II | GAGCTC | 1 cut(s) | 1001 |
| Eco130I | CCWWGG | 1 cut(s) | 1602 |
| Eco24I | GRGCYC | 1 cut(s) | 1003 |
| Eco32I | GATATC | 1 cut(s) | 1334 |
| Eco47I | GGWCC | 4 cut(s) | 914, 1018, 1140, 1610 |
| Eco53kI | GAGCTC | 1 cut(s) | 1001 |
| Eco57I | CTGAAG | 3 cut(s) | 329, 461, 2066 |
| Eco72I | CACGTG | 1 cut(s) | 2384 |
| Eco88I | CYCGRG | 1 cut(s) | 1939 |
| EcoICRI | GAGCTC | 1 cut(s) | 1001 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1610 |
| EcoRI | GAATTC | 2 cut(s) | 693, 2139 |
| EcoRII | CCWGG | 4 cut(s) | 259, 910, 1408, 1612 |
| EcoRV | GATATC | 1 cut(s) | 1334 |
| EcoT14I | CCWWGG | 1 cut(s) | 1602 |
| EcoT22I | ATGCAT | 2 cut(s) | 204, 2380 |
| EcoT38I | GRGCYC | 1 cut(s) | 1003 |
| ErhI | CCWWGG | 1 cut(s) | 1602 |
| Esp3I | CGTCTC | 1 cut(s) | 2067 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 1947, 1979, 2630, 2662 |
| FaqI | GGGAC | 3 cut(s) | 347, 506, 1490 |
| FauI | CCCGC | 3 cut(s) | 295, 1473, 2193 |
| FauNDI | CATATG | 2 cut(s) | 1283, 1387 |
| FbaI | TGATCA | 2 cut(s) | 1213, 2427 |
| FblI | GTMKAC | 1 cut(s) | 1807 |
| Fnu4HI | GCNGC | 8 cut(s) | 748, 1317, 1444, 1927, 1973, 2178, 2220, 2531 |
| FriOI | GRGCYC | 1 cut(s) | 1003 |
| Fsp4HI | GCNGC | 8 cut(s) | 748, 1317, 1444, 1927, 1973, 2178, 2220, 2531 |
| FspBI | CTAG | 2 cut(s) | 711, 1401 |
| GlaI | GCGC | 1 cut(s) | 1268 |
| GluI | GCNGC | 8 cut(s) | 748, 1317, 1444, 1927, 1973, 2178, 2220, 2531 |
| HapII | CCGG | 4 cut(s) | 885, 1021, 1373, 2007 |
| HgaI | GACGC | 2 cut(s) | 629, 2311 |
| HhaI | GCGC | 1 cut(s) | 1269 |
| Hin6I | GCGC | 1 cut(s) | 1267 |
| HinP1I | GCGC | 1 cut(s) | 1267 |
| HindIII | AAGCTT | 1 cut(s) | 1151 |
| HpaII | CCGG | 4 cut(s) | 885, 1021, 1373, 2007 |
| HphI | GGTGA | 3 cut(s) | 112, 475, 1387 |
| Hpy166II | GTNNAC | 4 cut(s) | 257, 539, 1370, 1808 |
| Hpy8I | GTNNAC | 4 cut(s) | 257, 539, 1370, 1808 |
| HpyAV | CCTTC | 8 cut(s) | 34, 383, 485, 1601, 1738, 1986, 2090, 2341 |
| HpyCH4IV | ACGT | 1 cut(s) | 2383 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 208, 888, 1440, 2225 |
| HpySE526I | ACGT | 1 cut(s) | 2383 |
| HspAI | GCGC | 1 cut(s) | 1267 |
| Ksp22I | TGATCA | 2 cut(s) | 1213, 2427 |
| Kzo9I | GATC | 9 cut(s) | 336, 480, 1213, 1403, 1746, 2254, 2427, 2655, 2659 |
| LmnI | GCTCC | 2 cut(s) | 887, 998 |
| Lsp1109I | GCAGC | 8 cut(s) | 734, 1328, 1455, 1913, 1959, 2189, 2206, 2517 |
| LweI | GCATC | 4 cut(s) | 189, 428, 1708, 2387 |
| MaeI | CTAG | 2 cut(s) | 711, 1401 |
| MaeII | ACGT | 1 cut(s) | 2383 |
| MaeIII | GTNAC | 9 cut(s) | 100, 248, 927, 977, 1194, 1616, 2323, 2388, 2447 |
| MalI | GATC | 9 cut(s) | 338, 482, 1215, 1405, 1748, 2256, 2429, 2657, 2661 |
| MboI | GATC | 9 cut(s) | 336, 480, 1213, 1403, 1746, 2254, 2427, 2655, 2659 |
| MboII | GAAGA | 6 cut(s) | 67, 812, 1048, 2522, 2597, 2638 |
| MfeI | CAATTG | 2 cut(s) | 633, 1764 |
| MflI | RGATCY | 1 cut(s) | 1403 |
| MhlI | GDGCHC | 3 cut(s) | 541, 1003, 1804 |
| MlyI | GAGTC | 4 cut(s) | 317, 537, 1931, 2396 |
| MmeI | TCCRAC | 5 cut(s) | 93, 642, 786, 1023, 1657 |
| Mph1103I | ATGCAT | 2 cut(s) | 204, 2380 |
| MroXI | GAANNNNTTC | 5 cut(s) | 234, 474, 1110, 1727, 2079 |
| MseI | TTAA | 8 cut(s) | 726, 959, 974, 1260, 1344, 1481, 1650, 1788 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1295, 2423, 2465 |
| MspA1I | CMGCKG | 1 cut(s) | 290 |
| MspI | CCGG | 4 cut(s) | 885, 1021, 1373, 2007 |
| MspR9I | CCNGG | 6 cut(s) | 261, 886, 912, 1410, 1614, 2008 |
| MunI | CAATTG | 2 cut(s) | 633, 1764 |
| Mva1269I | GAATGC | 2 cut(s) | 1729, 1994 |
| MvaI | CCWGG | 4 cut(s) | 261, 912, 1410, 1614 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 208, 888, 1440, 2225 |
| NciI | CCSGG | 2 cut(s) | 886, 2008 |
| NcoI | CCATGG | 1 cut(s) | 1602 |
| NdeI | CATATG | 2 cut(s) | 1283, 1387 |
| NdeII | GATC | 9 cut(s) | 336, 480, 1213, 1403, 1746, 2254, 2427, 2655, 2659 |
| NlaIV | GGNNCC | 2 cut(s) | 1801, 2170 |
| NmeAIII | GCCGAG | 1 cut(s) | 2153 |
| NmuCI | GTSAC | 5 cut(s) | 100, 248, 1194, 2323, 2388 |
| NsiI | ATGCAT | 2 cut(s) | 204, 2380 |
| NspI | RCATGY | 4 cut(s) | 72, 1300, 2226, 2322 |
| PaeI | GCATGC | 1 cut(s) | 2322 |
| PaeR7I | CTCGAG | 1 cut(s) | 1939 |
| PagI | TCATGA | 1 cut(s) | 1336 |
| PciI | ACATGT | 1 cut(s) | 1296 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1946 |
| PctI | GAATGC | 2 cut(s) | 1729, 1994 |
| PdmI | GAANNNNTTC | 5 cut(s) | 234, 474, 1110, 1727, 2079 |
| PfeI | GAWTC | 6 cut(s) | 15, 265, 382, 506, 1208, 2016 |
| PflFI | GACNNNGTC | 1 cut(s) | 2059 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 140 |
| PfoI | TCCNGGA | 1 cut(s) | 1408 |
| PinAI | ACCGGT | 1 cut(s) | 1372 |
| PkrI | GCNGC | 8 cut(s) | 749, 1318, 1445, 1928, 1974, 2179, 2221, 2532 |
| PleI | GAGTC | 4 cut(s) | 317, 537, 1931, 2395 |
| PmaCI | CACGTG | 1 cut(s) | 2384 |
| PmlI | CACGTG | 1 cut(s) | 2384 |
| PpsI | GAGTC | 4 cut(s) | 317, 537, 1931, 2395 |
| Ppu21I | YACGTR | 1 cut(s) | 2384 |
| PpuMI | RGGWCCY | 1 cut(s) | 1610 |
| PscI | ACATGT | 1 cut(s) | 1296 |
| PshBI | ATTAAT | 1 cut(s) | 1260 |
| Psp124BI | GAGCTC | 1 cut(s) | 1003 |
| Psp5II | RGGWCCY | 1 cut(s) | 1610 |
| Psp6I | CCWGG | 4 cut(s) | 259, 910, 1408, 1612 |
| PspCI | CACGTG | 1 cut(s) | 2384 |
| PspGI | CCWGG | 4 cut(s) | 259, 910, 1408, 1612 |
| PspN4I | GGNNCC | 2 cut(s) | 1801, 2170 |
| PspPI | GGNCC | 4 cut(s) | 914, 1018, 1140, 1610 |
| PspPPI | RGGWCCY | 1 cut(s) | 1610 |
| PspXI | VCTCGAGB | 1 cut(s) | 1939 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2600, 2632 |
| PstI | CTGCAG | 2 cut(s) | 1318, 2159 |
| PsuI | RGATCY | 1 cut(s) | 1403 |
| PsyI | GACNNNGTC | 1 cut(s) | 2059 |
| RsaI | GTAC | 3 cut(s) | 1353, 2024, 2122 |
| RsaNI | GTAC | 3 cut(s) | 1352, 2023, 2121 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1295, 2423, 2465 |
| SacI | GAGCTC | 1 cut(s) | 1003 |
| SaqAI | TTAA | 8 cut(s) | 726, 959, 974, 1260, 1344, 1481, 1650, 1788 |
| SatI | GCNGC | 8 cut(s) | 748, 1317, 1444, 1927, 1973, 2178, 2220, 2531 |
| Sau3AI | GATC | 9 cut(s) | 336, 480, 1213, 1403, 1746, 2254, 2427, 2655, 2659 |
| Sau96I | GGNCC | 4 cut(s) | 914, 1018, 1140, 1610 |
| SchI | GAGTC | 4 cut(s) | 317, 537, 1931, 2396 |
| ScrFI | CCNGG | 6 cut(s) | 261, 886, 912, 1410, 1614, 2008 |
| SduI | GDGCHC | 3 cut(s) | 541, 1003, 1804 |
| SfaNI | GCATC | 4 cut(s) | 189, 428, 1708, 2387 |
| SfcI | CTRYAG | 4 cut(s) | 177, 612, 1314, 2155 |
| Sfr274I | CTCGAG | 1 cut(s) | 1939 |
| SinI | GGWCC | 4 cut(s) | 914, 1018, 1140, 1610 |
| SlaI | CTCGAG | 1 cut(s) | 1939 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1295, 2423, 2465 |
| SmlI | CTYRAG | 3 cut(s) | 371, 545, 1939 |
| SmoI | CTYRAG | 3 cut(s) | 371, 545, 1939 |
| SphI | GCATGC | 1 cut(s) | 2322 |
| SsiI | CCGC | 7 cut(s) | 288, 816, 1466, 1697, 1740, 2186, 2653 |
| SspI | AATATT | 5 cut(s) | 54, 108, 685, 1417, 2090 |
| SspMI | CTAG | 2 cut(s) | 711, 1401 |
| SstI | GAGCTC | 1 cut(s) | 1003 |
| StyD4I | CCNGG | 6 cut(s) | 259, 884, 910, 1408, 1612, 2006 |
| StyI | CCWWGG | 1 cut(s) | 1602 |
| TaiI | ACGT | 1 cut(s) | 2386 |
| TaqI | TCGA | 8 cut(s) | 339, 513, 1160, 1749, 1940, 2019, 2253, 2658 |
| TaqII | GACCGA | 1 cut(s) | 931 |
| TfiI | GAWTC | 6 cut(s) | 15, 265, 382, 506, 1208, 2016 |
| Tru1I | TTAA | 8 cut(s) | 726, 959, 974, 1260, 1344, 1481, 1650, 1788 |
| Tru9I | TTAA | 8 cut(s) | 726, 959, 974, 1260, 1344, 1481, 1650, 1788 |
| TscAI | CASTG | 8 cut(s) | 259, 633, 898, 1672, 1742, 2108, 2164, 2306 |
| TseFI | GTSAC | 5 cut(s) | 100, 248, 1194, 2323, 2388 |
| TseI | GCWGC | 8 cut(s) | 747, 1316, 1443, 1926, 1972, 2177, 2219, 2530 |
| Tsp45I | GTSAC | 5 cut(s) | 100, 248, 1194, 2323, 2388 |
| TspDTI | ATGAA | 7 cut(s) | 404, 473, 590, 927, 1236, 2036, 2514 |
| TspGWI | ACGGA | 1 cut(s) | 835 |
| TspRI | CASTG | 8 cut(s) | 259, 633, 898, 1672, 1742, 2108, 2164, 2306 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2059 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 140 |
| VneI | GTGCAC | 1 cut(s) | 537 |
| VpaK11BI | GGWCC | 4 cut(s) | 914, 1018, 1140, 1610 |
| VspI | ATTAAT | 1 cut(s) | 1260 |
| XapI | RAATTY | 7 cut(s) | 516, 591, 693, 765, 1543, 2139, 2513 |
| XbaI | TCTAGA | 1 cut(s) | 1400 |
| XceI | RCATGY | 4 cut(s) | 72, 1300, 2226, 2322 |
| XhoI | CTCGAG | 1 cut(s) | 1939 |
| XmiI | GTMKAC | 1 cut(s) | 1807 |
| XmnI | GAANNNNTTC | 5 cut(s) | 234, 474, 1110, 1727, 2079 |
| XspI | CTAG | 2 cut(s) | 711, 1401 |
| Zsp2I | ATGCAT | 2 cut(s) | 204, 2380 |