TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| TIR | PF01582 | 22 - 205 | 3.2e-52 | TIR domain |
| TIR_2 | PF13676 | 25 - 136 | 5.6e-16 | TIR domain |
| NB-ARC | PF00931 | 219 - 371 | 1.2e-20 | NB-ARC domain |
| WHD_ROQ1 | PF23282 | 440 - 509 | 2.2e-16 | Disease resistance protein Roq1-like, winged-helix domain |
| LRR_14 | PF23598 | 679 - 781 | 2.2e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 700 - 788 | 1.7e-07 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_14 | PF23598 | 847 - 929 | 9.7e-06 | Leucine-rich repeat region |
| LRR_13 | PF23286 | 861 - 917 | 7.1e-06 | Disease resistance protein RPS4B-like, leucine-rich repeats |
| LRR_4 | PF12799 | 867 - 910 | 6.5e-06 | Leucine Rich repeats (2 copies) |
| C-JID | PF20160 | 996 - 1123 | 1.9e-09 | C-JID domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 513, 2258 |
| AatII | GACGTC | 1 cut(s) | 75 |
| Acc65I | GGTACC | 1 cut(s) | 2291 |
| AccB1I | GGYRCC | 1 cut(s) | 2291 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2153 |
| AccBSI | CCGCTC | 1 cut(s) | 2915 |
| AccI | GTMKAC | 2 cut(s) | 1621, 2184 |
| AccII | CGCG | 2 cut(s) | 132, 3284 |
| AccIII | TCCGGA | 2 cut(s) | 205, 3055 |
| AclWI | GGATC | 7 cut(s) | 356, 369, 1914, 1983, 2428, 2730, 3066 |
| AcoI | YGGCCR | 4 cut(s) | 480, 951, 1814, 2910 |
| AcuI | CTGAAG | 3 cut(s) | 615, 1856, 2330 |
| AcyI | GRCGYC | 2 cut(s) | 72, 402 |
| AdeI | CACNNNGTG | 2 cut(s) | 282, 421 |
| AfaI | GTAC | 7 cut(s) | 731, 857, 1208, 1491, 2293, 3310, 3356 |
| AfeI | AGCGCT | 1 cut(s) | 220 |
| AflII | CTTAAG | 2 cut(s) | 1910, 2351 |
| AflIII | ACRYGT | 1 cut(s) | 550 |
| AjnI | CCWGG | 7 cut(s) | 2287, 2509, 2986, 3151, 3190, 3243, 3442 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1223, 1255, 2220, 2252 |
| AleI | CACNNNNGTG | 1 cut(s) | 1358 |
| Alw21I | GWGCWC | 3 cut(s) | 14, 213, 1086 |
| Alw26I | GTCTC | 7 cut(s) | 1019, 1928, 2279, 2319, 2372, 2607, 2940 |
| AlwI | GGATC | 7 cut(s) | 356, 369, 1914, 1983, 2428, 2730, 3066 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 593, 2486 |
| Ama87I | CYCGRG | 1 cut(s) | 2105 |
| Aor13HI | TCCGGA | 2 cut(s) | 205, 3055 |
| Aor51HI | AGCGCT | 1 cut(s) | 220 |
| AoxI | GGCC | 7 cut(s) | 480, 951, 1735, 1814, 2239, 2910, 3435 |
| ApeKI | GCWGC | 4 cut(s) | 390, 1548, 3049, 3258 |
| AseI | ATTAAT | 1 cut(s) | 1697 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1170, 1512, 2890 |
| Asp718I | GGTACC | 1 cut(s) | 2291 |
| AspLEI | GCGC | 2 cut(s) | 221, 3286 |
| AspS9I | GGNCC | 7 cut(s) | 782, 1736, 1917, 2005, 2196, 2477, 3452 |
| AsuC2I | CCSGG | 1 cut(s) | 1539 |
| AsuHPI | GGTGA | 8 cut(s) | 42, 104, 249, 986, 1012, 1372, 2803, 2963 |
| AsuII | TTCGAA | 1 cut(s) | 1104 |
| AvaI | CYCGRG | 1 cut(s) | 2105 |
| AvaII | GGWCC | 6 cut(s) | 782, 1917, 2005, 2196, 2477, 3452 |
| AxyI | CCTNAGG | 1 cut(s) | 654 |
| BalI | TGGCCA | 1 cut(s) | 482 |
| BamHI | GGATCC | 1 cut(s) | 361 |
| BanI | GGYRCC | 1 cut(s) | 2291 |
| BanII | GRGCYC | 3 cut(s) | 213, 1086, 1539 |
| BauI | CACGAG | 2 cut(s) | 1527, 3231 |
| BbsI | GAAGAC | 7 cut(s) | 67, 102, 1535, 1882, 2130, 2276, 2636 |
| Bbv12I | GWGCWC | 3 cut(s) | 14, 213, 1086 |
| BbvI | GCAGC | 4 cut(s) | 402, 1560, 3036, 3245 |
| BceAI | ACGGC | 1 cut(s) | 2584 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 973, 1007 |
| BciT130I | CCWGG | 7 cut(s) | 2289, 2511, 2988, 3153, 3192, 3245, 3444 |
| BciVI | GTATCC | 3 cut(s) | 1794, 2582, 3241 |
| BclI | TGATCA | 2 cut(s) | 433, 775 |
| BcnI | CCSGG | 1 cut(s) | 1539 |
| BcoDI | GTCTC | 7 cut(s) | 1019, 1928, 2279, 2319, 2372, 2607, 2940 |
| BfoI | RGCGCY | 1 cut(s) | 222 |
| BfrI | CTTAAG | 2 cut(s) | 1910, 2351 |
| BfuI | GTATCC | 3 cut(s) | 1794, 2582, 3241 |
| BglII | AGATCT | 1 cut(s) | 1216 |
| BisI | GCNGC | 7 cut(s) | 391, 1549, 1552, 2393, 2913, 3050, 3259 |
| BlpI | GCTNAGC | 1 cut(s) | 411 |
| BlsI | GCNGC | 7 cut(s) | 392, 1550, 1553, 2394, 2914, 3051, 3260 |
| Bme1390I | CCNGG | 8 cut(s) | 1539, 2289, 2511, 2988, 3153, 3192, 3245, 3444 |
| Bme18I | GGWCC | 6 cut(s) | 782, 1917, 2005, 2196, 2477, 3452 |
| BmeT110I | CYCGRG | 1 cut(s) | 2105 |
| BmgT120I | GGNCC | 7 cut(s) | 782, 1736, 1917, 2005, 2196, 2477, 3452 |
| BmiI | GGNNCC | 8 cut(s) | 363, 865, 1536, 1738, 2197, 2293, 2478, 2681 |
| BmrFI | CCNGG | 8 cut(s) | 1539, 2289, 2511, 2988, 3153, 3192, 3245, 3444 |
| BmrI | ACTGGG | 1 cut(s) | 836 |
| BmuI | ACTGGG | 1 cut(s) | 836 |
| BpiI | GAAGAC | 7 cut(s) | 67, 102, 1535, 1882, 2130, 2276, 2636 |
| BpmI | CTGGAG | 3 cut(s) | 158, 2261, 2493 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1177, 2916 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 411 |
| Bpu14I | TTCGAA | 1 cut(s) | 1104 |
| BpuEI | CTTGAG | 5 cut(s) | 100, 235, 1100, 1985, 3491 |
| BpuMI | CCSGG | 1 cut(s) | 1539 |
| Bsa29I | ATCGAT | 1 cut(s) | 1455 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1451 |
| BsaHI | GRCGYC | 2 cut(s) | 72, 402 |
| BsaI | GGTCTC | 1 cut(s) | 1928 |
| BsaJI | CCNNGG | 5 cut(s) | 315, 2510, 3152, 3191, 3443 |
| BsaWI | WCCGGW | 3 cut(s) | 205, 2719, 3055 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 8, 38, 2709, 2739 |
| Bse1I | ACTGG | 3 cut(s) | 141, 842, 1311 |
| Bse21I | CCTNAGG | 1 cut(s) | 654 |
| Bse3DI | GCAATG | 2 cut(s) | 1338, 2016 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1451 |
| BseAI | TCCGGA | 2 cut(s) | 205, 3055 |
| BseBI | CCWGG | 7 cut(s) | 2289, 2511, 2988, 3153, 3192, 3245, 3444 |
| BseCI | ATCGAT | 1 cut(s) | 1455 |
| BseDI | CCNNGG | 5 cut(s) | 315, 2510, 3152, 3191, 3443 |
| BseJI | GATNNNNATC | 1 cut(s) | 1451 |
| BseMI | GCAATG | 2 cut(s) | 1338, 2016 |
| BseMII | CTCAG | 4 cut(s) | 645, 753, 2128, 2930 |
| BseNI | ACTGG | 3 cut(s) | 141, 842, 1311 |
| BseRI | GAGGAG | 5 cut(s) | 1007, 1547, 1982, 3368, 3446 |
| BseXI | GCAGC | 4 cut(s) | 402, 1560, 3036, 3245 |
| BseYI | CCCAGC | 1 cut(s) | 105 |
| Bsh1236I | CGCG | 2 cut(s) | 132, 3284 |
| BshFI | GGCC | 7 cut(s) | 482, 953, 1737, 1816, 2241, 2912, 3437 |
| BshNI | GGYRCC | 1 cut(s) | 2291 |
| BshVI | ATCGAT | 1 cut(s) | 1455 |
| BsiHKAI | GWGCWC | 3 cut(s) | 14, 213, 1086 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2105 |
| BsiSI | CCGG | 7 cut(s) | 206, 954, 1539, 1813, 1861, 2720, 3056 |
| BslFI | GGGAC | 1 cut(s) | 2209 |
| BsmAI | GTCTC | 7 cut(s) | 1019, 1928, 2279, 2319, 2372, 2607, 2940 |
| BsmBI | CGTCTC | 3 cut(s) | 1019, 2607, 2940 |
| BsmFI | GGGAC | 1 cut(s) | 2209 |
| BsmI | GAATGC | 3 cut(s) | 152, 1343, 1679 |
| BsnI | GGCC | 7 cut(s) | 482, 953, 1737, 1816, 2241, 2912, 3437 |
| Bso31I | GGTCTC | 1 cut(s) | 1928 |
| BsoBI | CYCGRG | 1 cut(s) | 2105 |
| Bsp119I | TTCGAA | 1 cut(s) | 1104 |
| Bsp1286I | GDGCHC | 4 cut(s) | 14, 213, 1086, 1539 |
| Bsp13I | TCCGGA | 2 cut(s) | 205, 3055 |
| Bsp1407I | TGTACA | 1 cut(s) | 1206 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 411 |
| Bsp19I | CCATGG | 1 cut(s) | 315 |
| BspANI | GGCC | 7 cut(s) | 482, 953, 1737, 1816, 2241, 2912, 3437 |
| BspCNI | CTCAG | 4 cut(s) | 646, 754, 2127, 2929 |
| BspDI | ATCGAT | 1 cut(s) | 1455 |
| BspEI | TCCGGA | 2 cut(s) | 205, 3055 |
| BspFNI | CGCG | 2 cut(s) | 132, 3284 |
| BspHI | TCATGA | 1 cut(s) | 1587 |
| BspLI | GGNNCC | 8 cut(s) | 363, 865, 1536, 1738, 2197, 2293, 2478, 2681 |
| BspPI | GGATC | 7 cut(s) | 356, 369, 1914, 1983, 2428, 2730, 3066 |
| BspT104I | TTCGAA | 1 cut(s) | 1104 |
| BspT107I | GGYRCC | 1 cut(s) | 2291 |
| BspTI | CTTAAG | 2 cut(s) | 1910, 2351 |
| BspTNI | GGTCTC | 1 cut(s) | 1928 |
| BsrBI | CCGCTC | 1 cut(s) | 2915 |
| BsrDI | GCAATG | 2 cut(s) | 1338, 2016 |
| BsrGI | TGTACA | 1 cut(s) | 1206 |
| BsrI | ACTGG | 3 cut(s) | 141, 842, 1311 |
| BssECI | CCNNGG | 5 cut(s) | 315, 2510, 3152, 3191, 3443 |
| BssNAI | GTATAC | 1 cut(s) | 1622 |
| BssNI | GRCGYC | 2 cut(s) | 72, 402 |
| BssSI | CACGAG | 2 cut(s) | 1527, 3231 |
| BssT1I | CCWWGG | 1 cut(s) | 315 |
| Bst1107I | GTATAC | 1 cut(s) | 1622 |
| Bst2BI | CACGAG | 2 cut(s) | 1527, 3231 |
| Bst2UI | CCWGG | 7 cut(s) | 2289, 2511, 2988, 3153, 3192, 3245, 3444 |
| Bst4CI | ACNGT | 5 cut(s) | 1626, 1994, 2043, 2842, 3043 |
| Bst6I | CTCTTC | 4 cut(s) | 1641, 1803, 2687, 3326 |
| BstACI | GRCGYC | 2 cut(s) | 72, 402 |
| BstAFI | CTTAAG | 2 cut(s) | 1910, 2351 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2661 |
| BstAUI | TGTACA | 1 cut(s) | 1206 |
| BstBI | TTCGAA | 1 cut(s) | 1104 |
| BstC8I | GCNNGC | 3 cut(s) | 150, 2397, 2597 |
| BstDSI | CCRYGG | 1 cut(s) | 315 |
| BstFNI | CGCG | 2 cut(s) | 132, 3284 |
| BstH2I | RGCGCY | 1 cut(s) | 222 |
| BstHHI | GCGC | 2 cut(s) | 221, 3286 |
| BstMAI | GTCTC | 7 cut(s) | 1019, 1928, 2279, 2319, 2372, 2607, 2940 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 2401, 2457, 2661 |
| BstNI | CCWGG | 7 cut(s) | 2289, 2511, 2988, 3153, 3192, 3245, 3444 |
| BstNSI | RCATGY | 1 cut(s) | 1986 |
| BstSCI | CCNGG | 8 cut(s) | 1537, 2287, 2509, 2986, 3151, 3190, 3243, 3442 |
| BstUI | CGCG | 2 cut(s) | 132, 3284 |
| BstV1I | GCAGC | 4 cut(s) | 402, 1560, 3036, 3245 |
| BstV2I | GAAGAC | 7 cut(s) | 67, 102, 1535, 1882, 2130, 2276, 2636 |
| BstX2I | RGATCY | 5 cut(s) | 361, 1216, 1906, 1975, 2722 |
| BstYI | RGATCY | 5 cut(s) | 361, 1216, 1906, 1975, 2722 |
| BstZ17I | GTATAC | 1 cut(s) | 1622 |
| Bsu15I | ATCGAT | 1 cut(s) | 1455 |
| Bsu36I | CCTNAGG | 1 cut(s) | 654 |
| BsuI | GTATCC | 3 cut(s) | 1794, 2582, 3241 |
| BsuRI | GGCC | 7 cut(s) | 482, 953, 1737, 1816, 2241, 2912, 3437 |
| BsuTUI | ATCGAT | 1 cut(s) | 1455 |
| BtgI | CCRYGG | 1 cut(s) | 315 |
| BtgZI | GCGATG | 1 cut(s) | 3132 |
| BtsI | GCAGTG | 1 cut(s) | 2028 |
| BtsIMutI | CAGTG | 3 cut(s) | 436, 1304, 2028 |
| Cac8I | GCNNGC | 3 cut(s) | 150, 2397, 2597 |
| CaiI | CAGNNNCTG | 2 cut(s) | 593, 2486 |
| CciI | TCATGA | 1 cut(s) | 1587 |
| CfoI | GCGC | 2 cut(s) | 221, 3286 |
| Cfr13I | GGNCC | 7 cut(s) | 782, 1736, 1917, 2005, 2196, 2477, 3452 |
| ClaI | ATCGAT | 1 cut(s) | 1455 |
| CseI | GACGC | 3 cut(s) | 410, 557, 1016 |
| Csp6I | GTAC | 7 cut(s) | 730, 856, 1207, 1490, 2292, 3309, 3355 |
| CviQI | GTAC | 7 cut(s) | 730, 856, 1207, 1490, 2292, 3309, 3355 |
| DraI | TTTAAA | 3 cut(s) | 2305, 2467, 3499 |
| DraIII | CACNNNGTG | 2 cut(s) | 282, 421 |
| EaeI | YGGCCR | 4 cut(s) | 480, 951, 1814, 2910 |
| Eam1104I | CTCTTC | 4 cut(s) | 1641, 1803, 2687, 3326 |
| EarI | CTCTTC | 4 cut(s) | 1641, 1803, 2687, 3326 |
| EciI | GGCGGA | 1 cut(s) | 2955 |
| Ecl136II | GAGCTC | 2 cut(s) | 211, 1084 |
| Eco130I | CCWWGG | 1 cut(s) | 315 |
| Eco24I | GRGCYC | 3 cut(s) | 213, 1086, 1539 |
| Eco31I | GGTCTC | 1 cut(s) | 1928 |
| Eco47I | GGWCC | 6 cut(s) | 782, 1917, 2005, 2196, 2477, 3452 |
| Eco47III | AGCGCT | 1 cut(s) | 220 |
| Eco53kI | GAGCTC | 2 cut(s) | 211, 1084 |
| Eco57I | CTGAAG | 3 cut(s) | 615, 1856, 2330 |
| Eco81I | CCTNAGG | 1 cut(s) | 654 |
| Eco88I | CYCGRG | 1 cut(s) | 2105 |
| EcoICRI | GAGCTC | 2 cut(s) | 211, 1084 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1736 |
| EcoRI | GAATTC | 1 cut(s) | 336 |
| EcoRII | CCWGG | 7 cut(s) | 2287, 2509, 2986, 3151, 3190, 3243, 3442 |
| EcoT14I | CCWWGG | 1 cut(s) | 315 |
| EcoT22I | ATGCAT | 1 cut(s) | 1482 |
| EcoT38I | GRGCYC | 3 cut(s) | 213, 1086, 1539 |
| ErhI | CCWWGG | 1 cut(s) | 315 |
| Esp3I | CGTCTC | 3 cut(s) | 1019, 2607, 2940 |
| FaqI | GGGAC | 1 cut(s) | 2209 |
| FauI | CCCGC | 1 cut(s) | 110 |
| FbaI | TGATCA | 2 cut(s) | 433, 775 |
| FblI | GTMKAC | 2 cut(s) | 1621, 2184 |
| Fnu4HI | GCNGC | 7 cut(s) | 391, 1549, 1552, 2393, 2913, 3050, 3259 |
| FriOI | GRGCYC | 3 cut(s) | 213, 1086, 1539 |
| Fsp4HI | GCNGC | 7 cut(s) | 391, 1549, 1552, 2393, 2913, 3050, 3259 |
| GlaI | GCGC | 2 cut(s) | 220, 3285 |
| GluI | GCNGC | 7 cut(s) | 391, 1549, 1552, 2393, 2913, 3050, 3259 |
| GsaI | CCCAGC | 1 cut(s) | 109 |
| GsuI | CTGGAG | 3 cut(s) | 158, 2261, 2493 |
| HaeII | RGCGCY | 1 cut(s) | 222 |
| HaeIII | GGCC | 7 cut(s) | 482, 953, 1737, 1816, 2241, 2912, 3437 |
| HapII | CCGG | 7 cut(s) | 206, 954, 1539, 1813, 1861, 2720, 3056 |
| HgaI | GACGC | 3 cut(s) | 410, 557, 1016 |
| HhaI | GCGC | 2 cut(s) | 221, 3286 |
| Hin1I | GRCGYC | 2 cut(s) | 72, 402 |
| Hin6I | GCGC | 2 cut(s) | 219, 3284 |
| HinP1I | GCGC | 2 cut(s) | 219, 3284 |
| HincII | GTYRAC | 1 cut(s) | 2046 |
| HindII | GTYRAC | 1 cut(s) | 2046 |
| HindIII | AAGCTT | 6 cut(s) | 465, 1924, 2033, 2348, 2438, 2672 |
| HpaII | CCGG | 7 cut(s) | 206, 954, 1539, 1813, 1861, 2720, 3056 |
| HphI | GGTGA | 8 cut(s) | 42, 104, 249, 986, 1012, 1372, 2803, 2963 |
| Hpy166II | GTNNAC | 7 cut(s) | 730, 785, 1622, 1634, 2026, 2046, 2185 |
| Hpy8I | GTNNAC | 7 cut(s) | 730, 785, 1622, 1634, 2026, 2046, 2185 |
| Hpy99I | CGWCG | 5 cut(s) | 74, 374, 1032, 2582, 3284 |
| HpyCH4III | ACNGT | 5 cut(s) | 1626, 1994, 2043, 2842, 3043 |
| HpyCH4IV | ACGT | 4 cut(s) | 72, 372, 550, 1012 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 2401, 2457, 2661 |
| HpySE526I | ACGT | 4 cut(s) | 72, 372, 550, 1012 |
| Hsp92I | GRCGYC | 2 cut(s) | 72, 402 |
| HspAI | GCGC | 2 cut(s) | 219, 3284 |
| Kpn2I | TCCGGA | 2 cut(s) | 205, 3055 |
| KpnI | GGTACC | 1 cut(s) | 2295 |
| Ksp22I | TGATCA | 2 cut(s) | 433, 775 |
| LmnI | GCTCC | 6 cut(s) | 191, 208, 387, 655, 1534, 3046 |
| Lsp1109I | GCAGC | 4 cut(s) | 402, 1560, 3036, 3245 |
| MaeII | ACGT | 4 cut(s) | 72, 372, 550, 1012 |
| MaeIII | GTNAC | 6 cut(s) | 932, 994, 1091, 1397, 1988, 3422 |
| MbiI | CCGCTC | 1 cut(s) | 2915 |
| MfeI | CAATTG | 5 cut(s) | 1771, 2223, 2845, 3462, 3468 |
| MflI | RGATCY | 5 cut(s) | 361, 1216, 1906, 1975, 2722 |
| MhlI | GDGCHC | 4 cut(s) | 14, 213, 1086, 1539 |
| MlsI | TGGCCA | 1 cut(s) | 482 |
| MluNI | TGGCCA | 1 cut(s) | 482 |
| MlyI | GAGTC | 5 cut(s) | 320, 2290, 3418, 3419, 3498 |
| MmeI | TCCRAC | 3 cut(s) | 393, 589, 1953 |
| Mox20I | TGGCCA | 1 cut(s) | 482 |
| Mph1103I | ATGCAT | 1 cut(s) | 1482 |
| MroI | TCCGGA | 2 cut(s) | 205, 3055 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1170, 1512, 2890 |
| MscI | TGGCCA | 1 cut(s) | 482 |
| MslI | CAYNNNNRTG | 6 cut(s) | 753, 1358, 1467, 1566, 2021, 2622 |
| Msp20I | TGGCCA | 1 cut(s) | 482 |
| MspA1I | CMGCKG | 2 cut(s) | 105, 1805 |
| MspCI | CTTAAG | 2 cut(s) | 1910, 2351 |
| MspI | CCGG | 7 cut(s) | 206, 954, 1539, 1813, 1861, 2720, 3056 |
| MspR9I | CCNGG | 8 cut(s) | 1539, 2289, 2511, 2988, 3153, 3192, 3245, 3444 |
| MunI | CAATTG | 5 cut(s) | 1771, 2223, 2845, 3462, 3468 |
| Mva1269I | GAATGC | 3 cut(s) | 152, 1343, 1679 |
| MvaI | CCWGG | 7 cut(s) | 2289, 2511, 2988, 3153, 3192, 3245, 3444 |
| MvnI | CGCG | 2 cut(s) | 132, 3284 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 2401, 2457, 2661 |
| NciI | CCSGG | 1 cut(s) | 1539 |
| NcoI | CCATGG | 1 cut(s) | 315 |
| NlaIV | GGNNCC | 8 cut(s) | 363, 865, 1536, 1738, 2197, 2293, 2478, 2681 |
| NmeAIII | GCCGAG | 1 cut(s) | 3463 |
| NmuCI | GTSAC | 5 cut(s) | 932, 1091, 1397, 1988, 3422 |
| NsiI | ATGCAT | 1 cut(s) | 1482 |
| NspI | RCATGY | 1 cut(s) | 1986 |
| NspV | TTCGAA | 1 cut(s) | 1104 |
| OliI | CACNNNNGTG | 1 cut(s) | 1358 |
| PaeR7I | CTCGAG | 1 cut(s) | 2105 |
| PagI | TCATGA | 1 cut(s) | 1587 |
| PctI | GAATGC | 3 cut(s) | 152, 1343, 1679 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1170, 1512, 2890 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2153 |
| PfoI | TCCNGGA | 2 cut(s) | 2986, 3243 |
| PkrI | GCNGC | 7 cut(s) | 392, 1550, 1553, 2394, 2914, 3051, 3260 |
| PleI | GAGTC | 5 cut(s) | 319, 2289, 3417, 3419, 3498 |
| PpsI | GAGTC | 5 cut(s) | 319, 2289, 3417, 3419, 3498 |
| PshBI | ATTAAT | 1 cut(s) | 1697 |
| PsiI | TTATAA | 2 cut(s) | 513, 2258 |
| Psp124BI | GAGCTC | 2 cut(s) | 213, 1086 |
| Psp6I | CCWGG | 7 cut(s) | 2287, 2509, 2986, 3151, 3190, 3243, 3442 |
| PspFI | CCCAGC | 1 cut(s) | 105 |
| PspGI | CCWGG | 7 cut(s) | 2287, 2509, 2986, 3151, 3190, 3243, 3442 |
| PspN4I | GGNNCC | 8 cut(s) | 363, 865, 1536, 1738, 2197, 2293, 2478, 2681 |
| PspPI | GGNCC | 7 cut(s) | 782, 1736, 1917, 2005, 2196, 2477, 3452 |
| PstNI | CAGNNNCTG | 2 cut(s) | 593, 2486 |
| PsuI | RGATCY | 5 cut(s) | 361, 1216, 1906, 1975, 2722 |
| PvuII | CAGCTG | 1 cut(s) | 1805 |
| RsaI | GTAC | 7 cut(s) | 731, 857, 1208, 1491, 2293, 3310, 3356 |
| RsaNI | GTAC | 7 cut(s) | 730, 856, 1207, 1490, 2292, 3309, 3355 |
| RseI | CAYNNNNRTG | 6 cut(s) | 753, 1358, 1467, 1566, 2021, 2622 |
| SacI | GAGCTC | 2 cut(s) | 213, 1086 |
| SatI | GCNGC | 7 cut(s) | 391, 1549, 1552, 2393, 2913, 3050, 3259 |
| Sau96I | GGNCC | 7 cut(s) | 782, 1736, 1917, 2005, 2196, 2477, 3452 |
| SchI | GAGTC | 5 cut(s) | 320, 2290, 3418, 3419, 3498 |
| ScrFI | CCNGG | 8 cut(s) | 1539, 2289, 2511, 2988, 3153, 3192, 3245, 3444 |
| SduI | GDGCHC | 4 cut(s) | 14, 213, 1086, 1539 |
| Sfr274I | CTCGAG | 1 cut(s) | 2105 |
| SfuI | TTCGAA | 1 cut(s) | 1104 |
| SinI | GGWCC | 6 cut(s) | 782, 1917, 2005, 2196, 2477, 3452 |
| SlaI | CTCGAG | 1 cut(s) | 2105 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 753, 1358, 1467, 1566, 2021, 2622 |
| SmlI | CTYRAG | 8 cut(s) | 79, 214, 1079, 1910, 1964, 2105, 2351, 3506 |
| SmoI | CTYRAG | 8 cut(s) | 79, 214, 1079, 1910, 1964, 2105, 2351, 3506 |
| SspI | AATATT | 3 cut(s) | 835, 2889, 3419 |
| SstI | GAGCTC | 2 cut(s) | 213, 1086 |
| StyD4I | CCNGG | 8 cut(s) | 1537, 2287, 2509, 2986, 3151, 3190, 3243, 3442 |
| StyI | CCWWGG | 1 cut(s) | 315 |
| TaaI | ACNGT | 5 cut(s) | 1626, 1994, 2043, 2842, 3043 |
| TaiI | ACGT | 4 cut(s) | 75, 375, 553, 1015 |
| TatI | WGTACW | 3 cut(s) | 855, 1206, 3308 |
| TauI | GCSGC | 3 cut(s) | 1554, 2395, 2915 |
| TscAI | CASTG | 3 cut(s) | 436, 1311, 2028 |
| TseFI | GTSAC | 5 cut(s) | 932, 1091, 1397, 1988, 3422 |
| TseI | GCWGC | 4 cut(s) | 390, 1548, 3049, 3258 |
| Tsp45I | GTSAC | 5 cut(s) | 932, 1091, 1397, 1988, 3422 |
| TspRI | CASTG | 3 cut(s) | 436, 1311, 2028 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2153 |
| Vha464I | CTTAAG | 2 cut(s) | 1910, 2351 |
| VpaK11BI | GGWCC | 6 cut(s) | 782, 1917, 2005, 2196, 2477, 3452 |
| VspI | ATTAAT | 1 cut(s) | 1697 |
| XbaI | TCTAGA | 3 cut(s) | 1219, 2542, 2605 |
| XceI | RCATGY | 1 cut(s) | 1986 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 36, 283, 2285 |
| XhoI | CTCGAG | 1 cut(s) | 2105 |
| XmiI | GTMKAC | 2 cut(s) | 1621, 2184 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1170, 1512, 2890 |
| ZraI | GACGTC | 1 cut(s) | 73 |
| Zsp2I | ATGCAT | 1 cut(s) | 1482 |