TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 110 - 149 | 1.6e-06 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 3 cut(s) | 57, 198, 267 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 134 |
| AgsI | TTSAA | 3 cut(s) | 74, 115, 144 |
| AluBI | AGCT | 3 cut(s) | 191, 306, 405 |
| AluI | AGCT | 3 cut(s) | 191, 306, 405 |
| Alw26I | GTCTC | 1 cut(s) | 464 |
| ApoI | RAATTY | 3 cut(s) | 57, 198, 267 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 110 |
| AsuHPI | GGTGA | 1 cut(s) | 113 |
| BccI | CCATC | 3 cut(s) | 13, 72, 364 |
| BclI | TGATCA | 1 cut(s) | 130 |
| BcoDI | GTCTC | 1 cut(s) | 464 |
| BfaI | CTAG | 3 cut(s) | 230, 398, 481 |
| BfmI | CTRYAG | 1 cut(s) | 324 |
| BglII | AGATCT | 1 cut(s) | 226 |
| BmsI | GCATC | 3 cut(s) | 223, 301, 310 |
| BpuEI | CTTGAG | 1 cut(s) | 245 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 134 |
| Bse1I | ACTGG | 1 cut(s) | 321 |
| BseGI | GGATG | 3 cut(s) | 24, 325, 375 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 134 |
| BseNI | ACTGG | 1 cut(s) | 321 |
| BslFI | GGGAC | 1 cut(s) | 219 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 134 |
| BsmAI | GTCTC | 1 cut(s) | 464 |
| BsmFI | GGGAC | 1 cut(s) | 219 |
| BsmI | GAATGC | 1 cut(s) | 112 |
| Bsp143I | GATC | 3 cut(s) | 121, 130, 226 |
| BsrI | ACTGG | 1 cut(s) | 321 |
| BssMI | GATC | 3 cut(s) | 121, 130, 226 |
| Bst4CI | ACNGT | 1 cut(s) | 150 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 320 |
| BstDEI | CTNAG | 2 cut(s) | 39, 302 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 132 |
| BstF5I | GGATG | 3 cut(s) | 24, 325, 375 |
| BstKTI | GATC | 3 cut(s) | 124, 133, 229 |
| BstMAI | GTCTC | 1 cut(s) | 464 |
| BstMBI | GATC | 3 cut(s) | 121, 130, 226 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 320 |
| BstNSI | RCATGY | 1 cut(s) | 357 |
| BstSFI | CTRYAG | 1 cut(s) | 324 |
| BstX2I | RGATCY | 1 cut(s) | 226 |
| BstYI | RGATCY | 1 cut(s) | 226 |
| BtsCI | GGATG | 3 cut(s) | 24, 325, 375 |
| BtsIMutI | CAGTG | 1 cut(s) | 314 |
| CviAII | CATG | 2 cut(s) | 237, 354 |
| CviJI | RGCY | 3 cut(s) | 191, 306, 405 |
| CviKI_1 | RGCY | 3 cut(s) | 191, 306, 405 |
| DdeI | CTNAG | 2 cut(s) | 39, 302 |
| DpnI | GATC | 3 cut(s) | 123, 132, 228 |
| DpnII | GATC | 3 cut(s) | 121, 130, 226 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 132 |
| EcoT22I | ATGCAT | 1 cut(s) | 238 |
| FaeI | CATG | 2 cut(s) | 240, 357 |
| FaqI | GGGAC | 1 cut(s) | 219 |
| FatI | CATG | 2 cut(s) | 236, 353 |
| FbaI | TGATCA | 1 cut(s) | 130 |
| FokI | GGATG | 3 cut(s) | 31, 332, 382 |
| FspBI | CTAG | 3 cut(s) | 230, 398, 481 |
| Hin1II | CATG | 2 cut(s) | 240, 357 |
| HindIII | AAGCTT | 1 cut(s) | 304 |
| HinfI | GANTC | 2 cut(s) | 290, 448 |
| HphI | GGTGA | 1 cut(s) | 113 |
| Hpy188I | TCNGA | 1 cut(s) | 447 |
| Hpy188III | TCNNGA | 3 cut(s) | 230, 262, 344 |
| HpyCH4III | ACNGT | 1 cut(s) | 150 |
| HpyCH4IV | ACGT | 1 cut(s) | 208 |
| HpyCH4V | TGCA | 4 cut(s) | 236, 248, 314, 353 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 320 |
| HpyF3I | CTNAG | 2 cut(s) | 39, 302 |
| HpySE526I | ACGT | 1 cut(s) | 208 |
| Hsp92II | CATG | 2 cut(s) | 240, 357 |
| Ksp22I | TGATCA | 1 cut(s) | 130 |
| Kzo9I | GATC | 3 cut(s) | 121, 130, 226 |
| LpnPI | CCDG | 2 cut(s) | 141, 302 |
| LweI | GCATC | 3 cut(s) | 223, 301, 310 |
| MaeI | CTAG | 3 cut(s) | 230, 398, 481 |
| MaeII | ACGT | 1 cut(s) | 208 |
| MalI | GATC | 3 cut(s) | 123, 132, 228 |
| MboI | GATC | 3 cut(s) | 121, 130, 226 |
| MboII | GAAGA | 1 cut(s) | 80 |
| MflI | RGATCY | 1 cut(s) | 226 |
| MluCI | AATT | 3 cut(s) | 57, 198, 267 |
| MmeI | TCCRAC | 1 cut(s) | 302 |
| MnlI | CCTC | 1 cut(s) | 324 |
| Mph1103I | ATGCAT | 1 cut(s) | 238 |
| MroXI | GAANNNNTTC | 1 cut(s) | 110 |
| MseI | TTAA | 2 cut(s) | 195, 252 |
| Mva1269I | GAATGC | 1 cut(s) | 112 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 320 |
| NdeII | GATC | 3 cut(s) | 121, 130, 226 |
| NlaIII | CATG | 2 cut(s) | 240, 357 |
| NsiI | ATGCAT | 1 cut(s) | 238 |
| NspI | RCATGY | 1 cut(s) | 357 |
| PctI | GAATGC | 1 cut(s) | 112 |
| PdmI | GAANNNNTTC | 1 cut(s) | 110 |
| PfeI | GAWTC | 2 cut(s) | 290, 448 |
| PsuI | RGATCY | 1 cut(s) | 226 |
| SaqAI | TTAA | 2 cut(s) | 195, 252 |
| Sau3AI | GATC | 3 cut(s) | 121, 130, 226 |
| SetI | ASST | 5 cut(s) | 130, 193, 211, 308, 407 |
| SfaNI | GCATC | 3 cut(s) | 223, 301, 310 |
| SfcI | CTRYAG | 1 cut(s) | 324 |
| SmlI | CTYRAG | 1 cut(s) | 260 |
| SmoI | CTYRAG | 1 cut(s) | 260 |
| Sse9I | AATT | 3 cut(s) | 57, 198, 267 |
| SspMI | CTAG | 3 cut(s) | 230, 398, 481 |
| TaaI | ACNGT | 1 cut(s) | 150 |
| TaiI | ACGT | 1 cut(s) | 211 |
| TasI | AATT | 3 cut(s) | 57, 198, 267 |
| TfiI | GAWTC | 2 cut(s) | 290, 448 |
| Tru1I | TTAA | 2 cut(s) | 195, 252 |
| Tru9I | TTAA | 2 cut(s) | 195, 252 |
| TscAI | CASTG | 1 cut(s) | 321 |
| TspRI | CASTG | 1 cut(s) | 321 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 132 |
| XapI | RAATTY | 3 cut(s) | 57, 198, 267 |
| XbaI | TCTAGA | 1 cut(s) | 229 |
| XceI | RCATGY | 1 cut(s) | 357 |
| XmnI | GAANNNNTTC | 1 cut(s) | 110 |
| XspI | CTAG | 3 cut(s) | 230, 398, 481 |
| Zsp2I | ATGCAT | 1 cut(s) | 238 |