FvH4_5g27182

calcium calmodulin-dependent serine threonine-protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
18452678 .. 18458580
5903 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g27182.t1

Sequence Viewer

Length: 1572 bp
ATGGGACAAGAAACTAGGAGACTCGCCGACGAGTATGAAGTGGCTGAGATTTTAGGGAGAGGAGGATTCTCAGTAGTGAGGAAAGGGATAAGCAGAAAAGAAGGTAGCAGTGAAAAAAACAATGTTGCCATCAAAACACTCAAAAGACCGTTTGGGGGTTCTTCCTCTTCCACATCAAAAAATTCTTCATCCAATCCTGGTTTGAGGCAGGGGTTCCCTGTCCCGACTAGGAAACAAGTCTCGATATCTAATGTTTTGCTCACAAATGAAATCTTGGTCATGAGGAAGATCGTTGAGAATGTGTCGCCGCATCCGAATGTGATTGACCTCTATGATGTGTATGAGGATGAGAATGGTGTTCACCTTGTGCTGGAGCTTTGTTCTGGTGGGGAACTCTTTGATAGGATTGTGAAGGAAGAGAGGTACTCTGAGGTAGGGGCTGCAGCTGTAGTCAGGCAGATTGCACAAGGTTTAGCTGCTCTGCACAAGTCAAATATTGTTCATAGGGATTTGAAGCCTGAGAATTGTCTGTTCTTGAATAGTTGTGATGATTCTCCTTTGAAGATTATGGATTTCGGTCTCAGTTCTGTCGAGGAGTTTACTGACCCTGTTGTTGGCTTGTTTGGTTCCATTGATTATGTATCACCAGAGGCTCTTTCTCAGGGACAAATCACTTGTAAAAGTGATATGTGGGCTCTTGGTGTAATCTTGTATATCCTTCTCTCCGGATACCCACCTTTTATTGCTCAGTCGAATCGGCAGAAGCAGCAGATGATAATGGCTGGAGAATTCAGCTTTTACGAGAAAACTTGGAAGGGAATTTCCTTATCAGCCAAGCAATTAATATCAGACCTCCTCAAAGTTGACCCTGAAAAGAGACCTAGTGCTCAAGAGCTTTTGGACCATCCATGGGTTGTAGGTCTTTCAGCCAGAGAGGATCAAATGGATGCTGAGATTGTGTCACGACTGCAGAGTTTTAATGCTCGACGCAAACTCCGAGCTGCAGCAATAGCTAGTGTGTGGACAACTTCTATTTTCTTGAGGACAAAGAAGCTCAAATCATTACTAGGGTCCCATGACCTTAAACAGGAGGAAATCCAGAACCTGAGTTTGCATTTTAAGAAGATATGCAAAATGGGTGATAATGCGACGCTGTCTGAATTTGAAGAGGTACTGAAAGCAATGAAAATGTCATCACTGGTCCCTTTAGCACCCCGTATTTTCGACCTATTTGACAACAATCGAGATGGAACAGTAGACATGCGAGAGATACTCTGTGGTTTCTCTAGTCTCAAGAATTCACAAGGAGATGATGCTCTCCGCCTCTGCTTCCAGATGTATGATACAGATCGGTCGGGATGCATCAGTAAAGAAGAAGTGGCATCTATGTTGAGGGCTTTGCCAGATGACTGCCTACCAGCTGATATTACCGAACCAGGGAAGTTGGATGAAATTTTTGATCGAATGGATGCCAACAGCGACGGAAAAGTTACCTTTGATGAGTTCAAAGCCGCCATGCAGAGAGATAGCTCTCTTCAAGATGTAGTCCTCTCCTCTCTTCGGCCACTATAG

Protein Analysis

524

Amino Acids

58.21

Weight (kDa)

5.54

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 95 - 305 1.8e-57 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 96 - 300 7.8e-30 Protein tyrosine and serine/threonine kinase
EF-hand_7 PF13499 438 - 507 4.8e-15 EF-hand domain pair
EF-hand_6 PF13405 440 - 467 6e-06 EF-hand domain
EF-hand_1 PF00036 481 - 508 2.3e-07 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017312)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g27182
malus_domestica MD07G1053900.v1.1
rosa_chinensis RchiOBHm_Chr7g0218291
rosa_laevigata RLG00000002380
rosa_multiflora Rmu_sc0002408.1_g000003 Rmu_sc0004956.1_g000013
rosa_roxburghii Rroxscaffold_3G00241090
rosa_rugosa Rorug07G0176200
rosa_samantha Rh7AG317900 Rh7BG309200 Rh7CG334700 Rh7DG316900
rosa_wichuraiana Rw7G027000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1257
AccIII TCCGGA 1 cut(s) 725
AciI CCGC 3 cut(s) 308, 1321, 1512
AclWI GGATC 1 cut(s) 945
AcoI YGGCCR 1 cut(s) 1562
AcsI RAATTY 6 cut(s) 181, 788, 819, 1160, 1297, 1452
AdeI CACNNNGTG 1 cut(s) 367
AfaI GTAC 2 cut(s) 425, 1173
AfiI CCNNNNNNNGG 7 cut(s) 155, 370, 614, 910, 1087, 1437, 1560
AgsI TTSAA 6 cut(s) 514, 538, 562, 1166, 1507, 1538
AjnI CCWGG 2 cut(s) 196, 1435
Alw21I GWGCWC 1 cut(s) 889
Alw26I GTCTC 5 cut(s) 13, 244, 584, 871, 1295
AlwI GGATC 1 cut(s) 945
AlwNI CAGNNNCTG 1 cut(s) 1105
Aor13HI TCCGGA 1 cut(s) 725
AoxI GGCC 1 cut(s) 1562
ApeKI GCWGC 6 cut(s) 440, 443, 476, 766, 1001, 1004
ApoI RAATTY 6 cut(s) 181, 788, 819, 1160, 1297, 1452
AseI ATTAAT 1 cut(s) 842
AspS9I GGNCC 3 cut(s) 901, 1071, 1201
AsuHPI GGTGA 3 cut(s) 353, 636, 1151
AvaII GGWCC 3 cut(s) 901, 1071, 1201
BanII GRGCYC 1 cut(s) 697
Bbv12I GWGCWC 1 cut(s) 889
BbvI GCAGC 6 cut(s) 427, 455, 463, 778, 988, 1016
BccI CCATC 3 cut(s) 137, 912, 1241
BciT130I CCWGG 2 cut(s) 198, 1437
BciVI GTATCC 1 cut(s) 722
BcoDI GTCTC 5 cut(s) 13, 244, 584, 871, 1295
BfaI CTAG 6 cut(s) 15, 228, 882, 1014, 1067, 1287
BfmI CTRYAG 5 cut(s) 441, 447, 968, 1002, 1568
BfuI GTATCC 1 cut(s) 722
BisI GCNGC 8 cut(s) 308, 441, 444, 477, 767, 1002, 1005, 1512
BlsI GCNGC 8 cut(s) 309, 442, 445, 478, 768, 1003, 1006, 1513
Bme1390I CCNGG 2 cut(s) 198, 1437
Bme18I GGWCC 3 cut(s) 901, 1071, 1201
BmgT120I GGNCC 3 cut(s) 901, 1071, 1201
BmiI GGNNCC 5 cut(s) 215, 628, 1072, 1073, 1203
BmrFI CCNGG 2 cut(s) 198, 1437
BmsI GCATC 7 cut(s) 319, 937, 1303, 1349, 1371, 1391, 1459
BplI GAGNNNNNCTC 4 cut(s) 410, 442, 1257, 1289
BpmI CTGGAG 2 cut(s) 392, 804
BpuEI CTTGAG 3 cut(s) 873, 1060, 1277
BsaBI GATNNNNATC 1 cut(s) 1347
BsaI GGTCTC 2 cut(s) 584, 871
BsaJI CCNNGG 2 cut(s) 908, 1436
BsaWI WCCGGW 1 cut(s) 725
BsaXI ACNNNNNCTCC 2 cut(s) 978, 1008
Bsc4I CCNNNNNNNGG 7 cut(s) 155, 370, 614, 910, 1087, 1437, 1560
Bse1I ACTGG 1 cut(s) 1203
Bse3DI GCAATG 1 cut(s) 1188
Bse8I GATNNNNATC 1 cut(s) 1347
BseAI TCCGGA 1 cut(s) 725
BseBI CCWGG 2 cut(s) 198, 1437
BseDI CCNNGG 2 cut(s) 908, 1436
BseGI GGATG 8 cut(s) 188, 310, 352, 904, 952, 1364, 1453, 1474
BseJI GATNNNNATC 1 cut(s) 1347
BseLI CCNNNNNNNGG 7 cut(s) 155, 370, 614, 910, 1087, 1437, 1560
BseMI GCAATG 1 cut(s) 1188
BseMII CTCAG 9 cut(s) 36, 84, 420, 510, 595, 674, 761, 942, 1097
BseNI ACTGG 1 cut(s) 1203
BseRI GAGGAG 4 cut(s) 75, 608, 845, 1543
BseXI GCAGC 6 cut(s) 427, 455, 463, 778, 988, 1016
BsgI GTGCAG 1 cut(s) 467
Bsh1285I CGRYCG 1 cut(s) 1355
BshFI GGCC 1 cut(s) 1564
BsiEI CGRYCG 1 cut(s) 1355
BsiHKAI GWGCWC 1 cut(s) 889
BsiSI CCGG 1 cut(s) 726
BslFI GGGAC 5 cut(s) 18, 206, 678, 1057, 1187
BslI CCNNNNNNNGG 7 cut(s) 155, 370, 614, 910, 1087, 1437, 1560
BsmAI GTCTC 5 cut(s) 13, 244, 584, 871, 1295
BsmFI GGGAC 5 cut(s) 18, 206, 678, 1057, 1187
BsnI GGCC 1 cut(s) 1564
Bso31I GGTCTC 2 cut(s) 584, 871
Bsp1286I GDGCHC 2 cut(s) 697, 889
Bsp13I TCCGGA 1 cut(s) 725
Bsp143I GATC 4 cut(s) 288, 937, 1348, 1459
Bsp19I CCATGG 1 cut(s) 908
BspACI CCGC 3 cut(s) 308, 1321, 1512
BspANI GGCC 1 cut(s) 1564
BspCNI CTCAG 9 cut(s) 37, 83, 421, 511, 594, 673, 760, 943, 1098
BspEI TCCGGA 1 cut(s) 725
BspHI TCATGA 1 cut(s) 279
BspLI GGNNCC 5 cut(s) 215, 628, 1072, 1073, 1203
BspMAI CTGCAG 3 cut(s) 445, 972, 1006
BspPI GGATC 1 cut(s) 945
BspTNI GGTCTC 2 cut(s) 584, 871
BsrDI GCAATG 1 cut(s) 1188
BsrI ACTGG 1 cut(s) 1203
BssECI CCNNGG 2 cut(s) 908, 1436
BssMI GATC 4 cut(s) 288, 937, 1348, 1459
BssT1I CCWWGG 1 cut(s) 908
Bst2UI CCWGG 2 cut(s) 198, 1437
Bst4CI ACNGT 2 cut(s) 150, 1255
Bst6I CTCTTC 5 cut(s) 172, 411, 1161, 1539, 1563
BstDEI CTNAG 9 cut(s) 45, 70, 429, 519, 581, 660, 747, 951, 1106
BstDSI CCRYGG 1 cut(s) 908
BstENI CCTNNNNNAGG 1 cut(s) 1085
BstF5I GGATG 8 cut(s) 188, 310, 352, 904, 952, 1364, 1453, 1474
BstKTI GATC 4 cut(s) 291, 940, 1351, 1462
BstMAI GTCTC 5 cut(s) 13, 244, 584, 871, 1295
BstMBI GATC 4 cut(s) 288, 937, 1348, 1459
BstMCI CGRYCG 1 cut(s) 1355
BstMWI GCNNNNNNNGC 2 cut(s) 766, 1010
BstNI CCWGG 2 cut(s) 198, 1437
BstNSI RCATGY 1 cut(s) 1264
BstSCI CCNGG 2 cut(s) 196, 1435
BstSFI CTRYAG 5 cut(s) 441, 447, 968, 1002, 1568
BstV1I GCAGC 6 cut(s) 427, 455, 463, 778, 988, 1016
BsuI GTATCC 1 cut(s) 722
BsuRI GGCC 1 cut(s) 1564
BtgI CCRYGG 1 cut(s) 908
BtsCI GGATG 8 cut(s) 188, 310, 352, 904, 952, 1364, 1453, 1474
BtsI GCAGTG 1 cut(s) 115
BtsIMutI CAGTG 2 cut(s) 115, 1196
CaiI CAGNNNCTG 1 cut(s) 1105
CciI TCATGA 1 cut(s) 279
Cfr13I GGNCC 3 cut(s) 901, 1071, 1201
CseI GACGC 2 cut(s) 996, 1159
Csp6I GTAC 2 cut(s) 424, 1172
CviAII CATG 5 cut(s) 280, 909, 1076, 1261, 1516
CviQI GTAC 2 cut(s) 424, 1172
DdeI CTNAG 9 cut(s) 45, 70, 429, 519, 581, 660, 747, 951, 1106
DpnI GATC 4 cut(s) 290, 939, 1350, 1461
DpnII GATC 4 cut(s) 288, 937, 1348, 1459
DraIII CACNNNGTG 1 cut(s) 367
EaeI YGGCCR 1 cut(s) 1562
Eam1104I CTCTTC 5 cut(s) 172, 411, 1161, 1539, 1563
EarI CTCTTC 5 cut(s) 172, 411, 1161, 1539, 1563
EciI GGCGGA 1 cut(s) 1310
Eco130I CCWWGG 1 cut(s) 908
Eco24I GRGCYC 1 cut(s) 697
Eco31I GGTCTC 2 cut(s) 584, 871
Eco32I GATATC 1 cut(s) 246
Eco47I GGWCC 3 cut(s) 901, 1071, 1201
EcoNI CCTNNNNNAGG 1 cut(s) 1085
EcoO109I RGGNCCY 1 cut(s) 1071
EcoRI GAATTC 2 cut(s) 788, 1297
EcoRII CCWGG 2 cut(s) 196, 1435
EcoRV GATATC 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 908
EcoT22I ATGCAT 1 cut(s) 1364
EcoT38I GRGCYC 1 cut(s) 697
ErhI CCWWGG 1 cut(s) 908
FaeI CATG 5 cut(s) 283, 912, 1079, 1264, 1519
FaqI GGGAC 5 cut(s) 18, 206, 678, 1057, 1187
FatI CATG 5 cut(s) 279, 908, 1075, 1260, 1515
FblI GTMKAC 1 cut(s) 1257
Fnu4HI GCNGC 8 cut(s) 308, 441, 444, 477, 767, 1002, 1005, 1512
FokI GGATG 8 cut(s) 175, 297, 359, 891, 959, 1371, 1460, 1481
FriOI GRGCYC 1 cut(s) 697
Fsp4HI GCNGC 8 cut(s) 308, 441, 444, 477, 767, 1002, 1005, 1512
FspBI CTAG 6 cut(s) 15, 228, 882, 1014, 1067, 1287
GluI GCNGC 8 cut(s) 308, 441, 444, 477, 767, 1002, 1005, 1512
GsuI CTGGAG 2 cut(s) 392, 804
HaeIII GGCC 1 cut(s) 1564
HapII CCGG 1 cut(s) 726
HgaI GACGC 2 cut(s) 996, 1159
Hin1II CATG 5 cut(s) 283, 912, 1079, 1264, 1519
HincII GTYRAC 1 cut(s) 865
HindII GTYRAC 1 cut(s) 865
HinfI GANTC 4 cut(s) 21, 66, 551, 754
HpaII CCGG 1 cut(s) 726
HphI GGTGA 3 cut(s) 353, 636, 1151
Hpy166II GTNNAC 5 cut(s) 361, 600, 865, 1023, 1258
Hpy188I TCNGA 5 cut(s) 315, 430, 850, 998, 1159
Hpy8I GTNNAC 5 cut(s) 361, 600, 865, 1023, 1258
Hpy99I CGWCG 4 cut(s) 32, 990, 1153, 1484
HpyAV CCTTC 4 cut(s) 95, 406, 728, 808
HpyCH4III ACNGT 2 cut(s) 150, 1255
HpyCH4V TGCA 9 cut(s) 443, 464, 484, 970, 1004, 1114, 1131, 1362, 1519
HpyF10VI GCNNNNNNNGC 2 cut(s) 766, 1010
HpyF3I CTNAG 9 cut(s) 45, 70, 429, 519, 581, 660, 747, 951, 1106
Hsp92II CATG 5 cut(s) 283, 912, 1079, 1264, 1519
KflI GGGWCCC 1 cut(s) 1071
Kpn2I TCCGGA 1 cut(s) 725
Kzo9I GATC 4 cut(s) 288, 937, 1348, 1459
LmnI GCTCC 1 cut(s) 373
Lsp1109I GCAGC 6 cut(s) 427, 455, 463, 778, 988, 1016
LweI GCATC 7 cut(s) 319, 937, 1303, 1349, 1371, 1391, 1459
MaeI CTAG 6 cut(s) 15, 228, 882, 1014, 1067, 1287
MaeIII GTNAC 2 cut(s) 960, 1489
MalI GATC 4 cut(s) 290, 939, 1350, 1461
MboI GATC 4 cut(s) 288, 937, 1348, 1459
MhlI GDGCHC 2 cut(s) 697, 889
MluCI AATT 8 cut(s) 181, 523, 788, 819, 839, 1160, 1297, 1452
MlyI GAGTC 1 cut(s) 15
MmeI TCCRAC 1 cut(s) 1425
Mph1103I ATGCAT 1 cut(s) 1364
MroI TCCGGA 1 cut(s) 725
MseI TTAA 4 cut(s) 842, 978, 1083, 1119
MslI CAYNNNNRTG 1 cut(s) 315
MspA1I CMGCKG 2 cut(s) 446, 1421
MspI CCGG 1 cut(s) 726
MspR9I CCNGG 2 cut(s) 198, 1437
MvaI CCWGG 2 cut(s) 198, 1437
MwoI GCNNNNNNNGC 2 cut(s) 766, 1010
NcoI CCATGG 1 cut(s) 908
NdeII GATC 4 cut(s) 288, 937, 1348, 1459
NlaIII CATG 5 cut(s) 283, 912, 1079, 1264, 1519
NlaIV GGNNCC 5 cut(s) 215, 628, 1072, 1073, 1203
NmuCI GTSAC 1 cut(s) 960
NsiI ATGCAT 1 cut(s) 1364
NspI RCATGY 1 cut(s) 1264
PagI TCATGA 1 cut(s) 279
PcsI WCGNNNNNNNCGW 2 cut(s) 311, 994
PfeI GAWTC 3 cut(s) 66, 551, 754
PflFI GACNNNGTC 1 cut(s) 1153
PkrI GCNGC 8 cut(s) 309, 442, 445, 478, 768, 1003, 1006, 1513
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
PpuMI RGGWCCY 1 cut(s) 1071
PshBI ATTAAT 1 cut(s) 842
Psp5II RGGWCCY 1 cut(s) 1071
Psp6I CCWGG 2 cut(s) 196, 1435
PspGI CCWGG 2 cut(s) 196, 1435
PspN4I GGNNCC 5 cut(s) 215, 628, 1072, 1073, 1203
PspPI GGNCC 3 cut(s) 901, 1071, 1201
PspPPI RGGWCCY 1 cut(s) 1071
PstI CTGCAG 3 cut(s) 445, 972, 1006
PstNI CAGNNNCTG 1 cut(s) 1105
PsyI GACNNNGTC 1 cut(s) 1153
PvuII CAGCTG 2 cut(s) 446, 1421
RsaI GTAC 2 cut(s) 425, 1173
RsaNI GTAC 2 cut(s) 424, 1172
RseI CAYNNNNRTG 1 cut(s) 315
SaqAI TTAA 4 cut(s) 842, 978, 1083, 1119
SatI GCNGC 8 cut(s) 308, 441, 444, 477, 767, 1002, 1005, 1512
Sau3AI GATC 4 cut(s) 288, 937, 1348, 1459
Sau96I GGNCC 3 cut(s) 901, 1071, 1201
SchI GAGTC 1 cut(s) 15
ScrFI CCNGG 2 cut(s) 198, 1437
SduI GDGCHC 2 cut(s) 697, 889
SfaNI GCATC 7 cut(s) 319, 937, 1303, 1349, 1371, 1391, 1459
SfcI CTRYAG 5 cut(s) 441, 447, 968, 1002, 1568
SinI GGWCC 3 cut(s) 901, 1071, 1201
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 3 cut(s) 888, 1039, 1292
SmoI CTYRAG 3 cut(s) 888, 1039, 1292
Sse9I AATT 8 cut(s) 181, 523, 788, 819, 839, 1160, 1297, 1452
SsiI CCGC 3 cut(s) 308, 1321, 1512
SspI AATATT 1 cut(s) 496
SspMI CTAG 6 cut(s) 15, 228, 882, 1014, 1067, 1287
StyD4I CCNGG 2 cut(s) 196, 1435
StyI CCWWGG 1 cut(s) 908
TaaI ACNGT 2 cut(s) 150, 1255
TaqI TCGA 7 cut(s) 242, 591, 752, 985, 1224, 1243, 1462
TaqII GACCGA 2 cut(s) 566, 1341
TasI AATT 8 cut(s) 181, 523, 788, 819, 839, 1160, 1297, 1452
TauI GCSGC 2 cut(s) 310, 1514
TfiI GAWTC 3 cut(s) 66, 551, 754
Tru1I TTAA 4 cut(s) 842, 978, 1083, 1119
Tru9I TTAA 4 cut(s) 842, 978, 1083, 1119
TscAI CASTG 2 cut(s) 115, 1203
TseFI GTSAC 1 cut(s) 960
TseI GCWGC 6 cut(s) 440, 443, 476, 766, 1001, 1004
Tsp45I GTSAC 1 cut(s) 960
TspDTI ATGAA 6 cut(s) 51, 177, 282, 491, 1199, 1464
TspGWI ACGGA 1 cut(s) 1497
TspRI CASTG 2 cut(s) 115, 1203
Tth111I GACNNNGTC 1 cut(s) 1153
VpaK11BI GGWCC 3 cut(s) 901, 1071, 1201
VspI ATTAAT 1 cut(s) 842
XagI CCTNNNNNAGG 1 cut(s) 1085
XapI RAATTY 6 cut(s) 181, 788, 819, 1160, 1297, 1452
XceI RCATGY 1 cut(s) 1264
XmiI GTMKAC 1 cut(s) 1257
XspI CTAG 6 cut(s) 15, 228, 882, 1014, 1067, 1287
Zsp2I ATGCAT 1 cut(s) 1364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.