Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0017312

Physical Location & Seq

Genomic Coordinates Forward (+)

14577966 .. 14578875

Gene Structure 910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0176200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGAACTCCAGTTACCAGCTCTCAGACTCCAACCAGAAAAGCCTCGAATCAGTCTCCTCCATCGACAAGCCCGAGTCGTCTTCCTTATCTGACACGAGCATCACGACTATCCGTTCACCTCATTCCGACGGAGCGGTGATACTTGCTTCGAGCAGGCCGAAGAAGCGAGCCGGTAGGCGAGTGTTCAAGGAGACTCGCCACCCGGTCTACCGCGGCGTGAGGCGCAGGAACAATAACAAGTGGGTGTGCGAGGTCAGGGAGCCGAACAAAAAGACCAGAATTTGGCTGGGGACGTACCCAACTGTTGAGATGGCCGCTCGGGCGCACGATGTGGCGGCATTGGCCCTTAGGGGGAAGCAGGCATGCCTCAATTTCGCTGATTCGGCGTGGCGGTTGCCCGTTCCGGCTTCCAAAGACCAGCTCGACATTCGCAGGTCCGCCGCCGAGGCTGCTGAGACATTTCGGCCTGAGGAATTCGGCGGCGTCTCAAGCAGCTGCGACGACAACGAGATGGAACATGAGAATGTGAAAATTGAGATGGACAGCGAGAAGAAGAATGATGGCTTCTACGAGGACGAGGAGAGGGAACACGAGAATGAGAAGAAGAACGACGGCTTCTACGAGGATGAAGAGGCGCTCTTCGACATGCCCAGATTGCTGACTAGCATGGCGGAGGGTCCACTGCTCTCTCCGCCTCGTCATTACTTGGACAGTATCAACTGGGCAGACTATCAGGTGGAAAGCGAGTCAAATTTCAGCTTGTGGAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009877 GO:0009931 GO:0009987 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 ko04921 ko04925 ko05145 map04626 map04921 map04925 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

257

Amino Acids

29.32

Weight (kDa)

5.32

Isoelectric Point (pI)

65.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	68 - 118	5.9e-16	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017312)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g27182
malus_domestica	MD07G1053900.v1.1
rosa_chinensis	RchiOBHm_Chr7g0218291
rosa_laevigata	RLG00000002380
rosa_multiflora	Rmu_sc0002408.1_g000003 Rmu_sc0004956.1_g000013
rosa_roxburghii	Rroxscaffold_3G00241090
rosa_rugosa	Rorug07G0176200
rosa_samantha	Rh7AG317900 Rh7BG309200 Rh7CG334700 Rh7DG316900
rosa_wichuraiana	Rw7G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	423
AccB7I	CCANNNNNTGG	1 cut(s)	282
AccBSI	CCGCTC	2 cut(s)	134, 317
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	1 cut(s)	213
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	3 cut(s)	279, 473, 751
AcyI	GRCGYC	1 cut(s)	483
AdeI	CACNNNGTG	1 cut(s)	331
AfaI	GTAC	1 cut(s)	296
AfiI	CCNNNNNNNGG	2 cut(s)	282, 351
AgsI	TTSAA	1 cut(s)	187
AluBI	AGCT	5 cut(s)	19, 421, 495, 759, 768
AluI	AGCT	5 cut(s)	19, 421, 495, 759, 768
Alw26I	GTCTC	4 cut(s)	58, 185, 449, 490
Ama87I	CYCGRG	2 cut(s)	71, 318
AoxI	GGCC	4 cut(s)	155, 312, 342, 464
ApeKI	GCWGC	3 cut(s)	449, 492, 495
ApoI	RAATTY	3 cut(s)	279, 473, 751
AspLEI	GCGC	3 cut(s)	225, 325, 637
AspS9I	GGNCC	3 cut(s)	343, 435, 677
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	2 cut(s)	108, 148
AvaI	CYCGRG	2 cut(s)	71, 318
AvaII	GGWCC	2 cut(s)	435, 677
AxyI	CCTNAGG	2 cut(s)	347, 468
BauI	CACGAG	2 cut(s)	94, 590
BbsI	GAAGAC	1 cut(s)	72
BbvI	GCAGC	3 cut(s)	436, 482, 504
BccI	CCATC	5 cut(s)	68, 304, 505, 532, 554
BceAI	ACGGC	1 cut(s)	628
BcnI	CCSGG	1 cut(s)	203
BcoDI	GTCTC	4 cut(s)	58, 185, 449, 490
BfaI	CTAG	1 cut(s)	663
BfoI	RGCGCY	1 cut(s)	638
BfuAI	ACCTGC	1 cut(s)	423
BglI	GCCNNNNNGGC	2 cut(s)	320, 446
BisI	GCNGC	8 cut(s)	214, 315, 336, 441, 450, 481, 493, 496
BlsI	GCNGC	8 cut(s)	215, 316, 337, 442, 451, 482, 494, 497
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	2 cut(s)	435, 677
BmeT110I	CYCGRG	2 cut(s)	71, 318
BmgT120I	GGNCC	3 cut(s)	343, 435, 677
BmiI	GGNNCC	2 cut(s)	261, 678
BmrFI	CCNGG	1 cut(s)	203
BmrI	ACTGGG	1 cut(s)	730
BmsI	GCATC	1 cut(s)	108
BmuI	ACTGGG	1 cut(s)	730
BpiI	GAAGAC	1 cut(s)	72
BpuEI	CTTGAG	1 cut(s)	472
BpuMI	CCSGG	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	211, 444
Bsc4I	CCNNNNNNNGG	2 cut(s)	282, 351
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	9, 725
Bse21I	CCTNAGG	2 cut(s)	347, 468
BseDI	CCNNGG	2 cut(s)	211, 444
BseGI	GGATG	1 cut(s)	631
BseLI	CCNNNNNNNGG	2 cut(s)	282, 351
BseMII	CTCAG	3 cut(s)	36, 444, 459
BseNI	ACTGG	2 cut(s)	9, 725
BseRI	GAGGAG	2 cut(s)	46, 593
BseXI	GCAGC	3 cut(s)	436, 482, 504
BseYI	CCCAGC	1 cut(s)	286
Bsh1236I	CGCG	1 cut(s)	213
BshFI	GGCC	4 cut(s)	157, 314, 344, 466
BsiHKCI	CYCGRG	2 cut(s)	71, 318
BsiSI	CCGG	3 cut(s)	171, 203, 404
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	2 cut(s)	282, 351
BsmAI	GTCTC	4 cut(s)	58, 185, 449, 490
BsmBI	CGTCTC	1 cut(s)	490
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	4 cut(s)	157, 314, 344, 466
BsoBI	CYCGRG	2 cut(s)	71, 318
BspANI	GGCC	4 cut(s)	157, 314, 344, 466
BspCNI	CTCAG	3 cut(s)	35, 445, 460
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	261, 678
BspMI	ACCTGC	1 cut(s)	423
BspQI	GCTCTTC	1 cut(s)	644
BsrBI	CCGCTC	2 cut(s)	134, 317
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	2 cut(s)	9, 725
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	211, 444
BssNI	GRCGYC	1 cut(s)	483
BssSI	CACGAG	2 cut(s)	94, 590
Bst2BI	CACGAG	2 cut(s)	94, 590
Bst4CI	ACNGT	2 cut(s)	304, 713
Bst6I	CTCTTC	2 cut(s)	624, 644
BstACI	GRCGYC	1 cut(s)	483
BstC8I	GCNNGC	4 cut(s)	155, 168, 360, 364
BstDEI	CTNAG	4 cut(s)	22, 347, 453, 468
BstDSI	CCRYGG	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	631
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	638
BstHHI	GCGC	3 cut(s)	225, 325, 637
BstMAI	GTCTC	4 cut(s)	58, 185, 449, 490
BstNSI	RCATGY	2 cut(s)	366, 649
BstSCI	CCNGG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	213
BstV1I	GCAGC	3 cut(s)	436, 482, 504
BstV2I	GAAGAC	1 cut(s)	72
Bsu36I	CCTNAGG	2 cut(s)	347, 468
BsuRI	GGCC	4 cut(s)	157, 314, 344, 466
BtgI	CCRYGG	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	631
BtsI	GCAGTG	1 cut(s)	680
BtsIMutI	CAGTG	1 cut(s)	680
BveI	ACCTGC	1 cut(s)	423
Cac8I	GCNNGC	4 cut(s)	155, 168, 360, 364
CfoI	GCGC	3 cut(s)	225, 325, 637
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	343, 435, 677
Cfr42I	CCGCGG	1 cut(s)	214
CseI	GACGC	1 cut(s)	472
Csp6I	GTAC	1 cut(s)	295
CviAII	CATG	4 cut(s)	363, 518, 646, 667
CviQI	GTAC	1 cut(s)	295
DdeI	CTNAG	4 cut(s)	22, 347, 453, 468
DraIII	CACNNNGTG	1 cut(s)	331
EaeI	YGGCCR	1 cut(s)	312
Eam1104I	CTCTTC	2 cut(s)	624, 644
EarI	CTCTTC	2 cut(s)	624, 644
EciI	GGCGGA	3 cut(s)	427, 681, 686
Eco47I	GGWCC	2 cut(s)	435, 677
Eco81I	CCTNAGG	2 cut(s)	347, 468
Eco88I	CYCGRG	2 cut(s)	71, 318
EcoRI	GAATTC	1 cut(s)	473
Esp3I	CGTCTC	1 cut(s)	490
FaeI	CATG	4 cut(s)	366, 521, 649, 670
FaiI	YATR	4 cut(s)	364, 519, 647, 668
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	4 cut(s)	362, 517, 645, 666
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	8 cut(s)	214, 315, 336, 441, 450, 481, 493, 496
FokI	GGATG	1 cut(s)	638
Fsp4HI	GCNGC	8 cut(s)	214, 315, 336, 441, 450, 481, 493, 496
FspBI	CTAG	1 cut(s)	663
GlaI	GCGC	3 cut(s)	224, 324, 636
GluI	GCNGC	8 cut(s)	214, 315, 336, 441, 450, 481, 493, 496
GsaI	CCCAGC	1 cut(s)	290
HaeII	RGCGCY	1 cut(s)	638
HaeIII	GGCC	4 cut(s)	157, 314, 344, 466
HapII	CCGG	3 cut(s)	171, 203, 404
HgaI	GACGC	1 cut(s)	472
HhaI	GCGC	3 cut(s)	225, 325, 637
Hin1I	GRCGYC	1 cut(s)	483
Hin1II	CATG	4 cut(s)	366, 521, 649, 670
Hin6I	GCGC	3 cut(s)	223, 323, 635
HinP1I	GCGC	3 cut(s)	223, 323, 635
HinfI	GANTC	6 cut(s)	26, 47, 74, 193, 380, 746
HpaII	CCGG	3 cut(s)	171, 203, 404
HphI	GGTGA	2 cut(s)	108, 148
Hpy166II	GTNNAC	3 cut(s)	116, 208, 680
Hpy188I	TCNGA	3 cut(s)	25, 91, 127
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	3 cut(s)	116, 208, 680
Hpy99I	CGWCG	3 cut(s)	131, 503, 614
HpyCH4III	ACNGT	2 cut(s)	304, 713
HpyCH4IV	ACGT	1 cut(s)	293
HpyF3I	CTNAG	4 cut(s)	22, 347, 453, 468
HpySE526I	ACGT	1 cut(s)	293
Hsp92I	GRCGYC	1 cut(s)	483
Hsp92II	CATG	4 cut(s)	366, 521, 649, 670
HspAI	GCGC	3 cut(s)	223, 323, 635
KspI	CCGCGG	1 cut(s)	214
LguI	GCTCTTC	1 cut(s)	644
LmnI	GCTCC	3 cut(s)	131, 259, 765
Lsp1109I	GCAGC	3 cut(s)	436, 482, 504
LweI	GCATC	1 cut(s)	108
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	1 cut(s)	293
MaeIII	GTNAC	1 cut(s)	11
MbiI	CCGCTC	2 cut(s)	134, 317
MboII	GAAGA	8 cut(s)	72, 172, 562, 565, 613, 616, 631, 641
MluCI	AATT	5 cut(s)	279, 370, 473, 531, 751
MlyI	GAGTC	4 cut(s)	20, 83, 187, 755
MmeI	TCCRAC	2 cut(s)	54, 150
MslI	CAYNNNNRTG	2 cut(s)	522, 594
MspA1I	CMGCKG	2 cut(s)	213, 495
MspI	CCGG	3 cut(s)	171, 203, 404
MspR9I	CCNGG	1 cut(s)	203
MvnI	CGCG	1 cut(s)	213
NciI	CCSGG	1 cut(s)	203
NlaIII	CATG	4 cut(s)	366, 521, 649, 670
NlaIV	GGNNCC	2 cut(s)	261, 678
NmeAIII	GCCGAG	1 cut(s)	469
NspI	RCATGY	2 cut(s)	366, 649
PaeI	GCATGC	1 cut(s)	366
PciSI	GCTCTTC	1 cut(s)	644
PcsI	WCGNNNNNNNCGW	4 cut(s)	69, 101, 155, 618
PfeI	GAWTC	2 cut(s)	47, 380
PflMI	CCANNNNNTGG	1 cut(s)	282
PkrI	GCNGC	8 cut(s)	215, 316, 337, 442, 451, 482, 494, 497
PleI	GAGTC	4 cut(s)	20, 82, 187, 754
PpsI	GAGTC	4 cut(s)	20, 82, 187, 754
PspFI	CCCAGC	1 cut(s)	286
PspN4I	GGNNCC	2 cut(s)	261, 678
PspPI	GGNCC	3 cut(s)	343, 435, 677
PsrI	GAACNNNNNNTAC	1 cut(s)	28
PvuII	CAGCTG	1 cut(s)	495
RsaI	GTAC	1 cut(s)	296
RsaNI	GTAC	1 cut(s)	295
RseI	CAYNNNNRTG	2 cut(s)	522, 594
SacII	CCGCGG	1 cut(s)	214
SapI	GCTCTTC	1 cut(s)	644
SatI	GCNGC	8 cut(s)	214, 315, 336, 441, 450, 481, 493, 496
Sau96I	GGNCC	3 cut(s)	343, 435, 677
SchI	GAGTC	4 cut(s)	20, 83, 187, 755
ScrFI	CCNGG	1 cut(s)	203
SfaNI	GCATC	1 cut(s)	108
Sfr303I	CCGCGG	1 cut(s)	214
SgrBI	CCGCGG	1 cut(s)	214
SinI	GGWCC	2 cut(s)	435, 677
SmiMI	CAYNNNNRTG	2 cut(s)	522, 594
SmlI	CTYRAG	1 cut(s)	487
SmoI	CTYRAG	1 cut(s)	487
SphI	GCATGC	1 cut(s)	366
Sse9I	AATT	5 cut(s)	279, 370, 473, 531, 751
SspMI	CTAG	1 cut(s)	663
StyD4I	CCNGG	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	304, 713
TaiI	ACGT	1 cut(s)	296
TaqI	TCGA	5 cut(s)	45, 63, 149, 423, 642
TasI	AATT	5 cut(s)	279, 370, 473, 531, 751
TauI	GCSGC	5 cut(s)	216, 317, 338, 443, 483
TfiI	GAWTC	2 cut(s)	47, 380
TscAI	CASTG	1 cut(s)	687
TseI	GCWGC	3 cut(s)	449, 492, 495
TspDTI	ATGAA	2 cut(s)	17, 642
TspGWI	ACGGA	2 cut(s)	101, 144
TspRI	CASTG	1 cut(s)	687
Van91I	CCANNNNNTGG	1 cut(s)	282
VpaK11BI	GGWCC	2 cut(s)	435, 677
XapI	RAATTY	3 cut(s)	279, 473, 751
XceI	RCATGY	2 cut(s)	366, 649
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XmiI	GTMKAC	1 cut(s)	207
XspI	CTAG	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.