Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0017312

Physical Location & Seq

Genomic Coordinates Forward (+)

33099717 .. 33103989

Gene Structure 4273 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002380

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1371 bp

ATGGGACAAGAAACTAGGAGACTCGCCGATGAGTATGAGGTAGCTGAGATTTTAGGGAGAGGAGGATTCTCAGTAGTCAGGAAAGGCATCAGTAGAAAAGCAGGTACCAGTGACAAAAACAATGTTGCCATCAAAACACTCAAAAGACCATTTGGGGGCTCTTCCTCTTCCTCATCCAAAAACTCTTCGTTTAATCCTGGTTTGAAGCAGGGCTTCCCAGTCCCGACTAGGAAACAAGTCTCTATATCTAATGTTTTGCTCACAAATGAAATCTTGGTCATGAGGAAGATAGTTGAGAATGTCTCGCCCCATCCGAATGTGATTGACCTCTATGATGTGTATGAGGATGAGAATGGGGTTCACCTTGTGCTGGAGCTGTGTTCCGGTGGCGAACTCTTTGATAGGATTGTGAAACAAGAGAGGTACTCTGAGGCAGGGGCTGCAGTTGTGGTCAGGCAGATTGCACAGGGCTTAGCTGCTCTGCACAAGTCAGATATTGTTCATAGGGATTTGAAGCCTGAGAATTGTCTCTTCTTAAATAGTAGTGATGATTCTCCATTGAAGATCATGGACTTCGGGCTCAGTTCTGTTGAAGAGTTTACTGACCCTGTTGTTGGCTTGTTTGGTTCCATTGATTATGTCTCACCAGAGGCTCTTTCTCAGGGACAAATCACTTGTAAAAGTGATATGTGGGCTCTCGGTGTAATCTTGTATATCCTTCTCTCTGGGTACCCACCTTTTATTGCTCAGTCGAATCGGCAGAAGCAGCAGATGATAATGGCCGGAGAATTCAGCTTTTACGAGAAAACTTGGAAGGGAATTTCCTTATCAGCTAAGCAATTAATATCAGACCTCCTCAAAGTTGACCCTGAAAAGAGACCTAGTGCTCAAGAGCTTTTGGACCATCCATGGGTTGTAGGTCTTTCAGCCAGAGAGGACCAAATGGATGCTGAGATTGTTTCACGACTGCAGAGTTTTAATGCTCGACGCAAACTCCGTGCTGCAGCAATAGCTAGTGTGTGGACAAGCTCCATTTTCTTGAGGACAAAGAAGCTCAAATCATTGCTAGGGTCCCATGACCTTAAACAGGAGGAAATCCAGAACCTGAGTTTGCATTTTAAGAAAATATGTGTAAATGGTGATAATGCAACTCTGTCTGAATTTGTGGAGGTGCTGAAAGCAATGAAAATGTCATCACTGGTCCCTCTAGCACCCCGTATTTTCGACCTATTTGACAACAACAGAGATGGAACAGTAGACATGCGAGAGATACTCTGTGGTTTCTCTAGTCTCAAGAATTCACGAGGAGATGATGCTCTCCGCCTGTGCTTCCAGGTGCATTCTCCTTTTCTGTGTCTCCATTGTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009877 GO:0009931 GO:0009987 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 ko04921 ko04925 ko05145 map04626 map04921 map04925 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 EF-hand_7 Pkinase

Protein Analysis

457

Amino Acids

50.74

Weight (kDa)

7.59

Isoelectric Point (pI)

42.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	95 - 305	6.2e-58	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	96 - 300	8.3e-30	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017312)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g27182
malus_domestica	MD07G1053900.v1.1
rosa_chinensis	RchiOBHm_Chr7g0218291
rosa_laevigata	RLG00000002380
rosa_multiflora	Rmu_sc0002408.1_g000003 Rmu_sc0004956.1_g000013
rosa_roxburghii	Rroxscaffold_3G00241090
rosa_rugosa	Rorug07G0176200
rosa_samantha	Rh7AG317900 Rh7BG309200 Rh7CG334700 Rh7DG316900
rosa_wichuraiana	Rw7G027000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	92
Acc65I	GGTACC	2 cut(s)	104, 729
AccB1I	GGYRCC	2 cut(s)	104, 729
AccI	GTMKAC	1 cut(s)	1257
AciI	CCGC	1 cut(s)	1321
AcoI	YGGCCR	1 cut(s)	780
AcsI	RAATTY	4 cut(s)	788, 819, 1160, 1297
AdeI	CACNNNGTG	1 cut(s)	367
AfaI	GTAC	3 cut(s)	106, 425, 731
AfiI	CCNNNNNNNGG	5 cut(s)	155, 370, 614, 910, 1087
AgsI	TTSAA	4 cut(s)	205, 514, 562, 593
AjnI	CCWGG	2 cut(s)	196, 1332
AluBI	AGCT	9 cut(s)	44, 376, 476, 795, 833, 895, 1013, 1029, 1054
AluI	AGCT	9 cut(s)	44, 376, 476, 795, 833, 895, 1013, 1029, 1054
Alw21I	GWGCWC	1 cut(s)	889
Alw26I	GTCTC	8 cut(s)	13, 244, 307, 533, 646, 871, 1295, 1361
AlwNI	CAGNNNCTG	2 cut(s)	440, 1105
AoxI	GGCC	1 cut(s)	780
ApeKI	GCWGC	5 cut(s)	440, 476, 766, 1001, 1004
ApoI	RAATTY	4 cut(s)	788, 819, 1160, 1297
AseI	ATTAAT	1 cut(s)	842
Asp718I	GGTACC	2 cut(s)	104, 729
AspS9I	GGNCC	4 cut(s)	901, 937, 1071, 1201
AsuHPI	GGTGA	3 cut(s)	353, 636, 1151
AvaII	GGWCC	4 cut(s)	901, 937, 1071, 1201
BanI	GGYRCC	2 cut(s)	104, 729
BanII	GRGCYC	3 cut(s)	161, 582, 697
BauI	CACGAG	1 cut(s)	1302
Bbv12I	GWGCWC	1 cut(s)	889
BbvI	GCAGC	5 cut(s)	427, 463, 778, 988, 1016
BccI	CCATC	4 cut(s)	137, 318, 912, 1241
BciT130I	CCWGG	2 cut(s)	198, 1334
BcoDI	GTCTC	8 cut(s)	13, 244, 307, 533, 646, 871, 1295, 1361
BfaI	CTAG	7 cut(s)	15, 228, 882, 1014, 1067, 1208, 1287
BfmI	CTRYAG	3 cut(s)	441, 968, 1002
BfuAI	ACCTGC	1 cut(s)	92
BisI	GCNGC	5 cut(s)	441, 477, 767, 1002, 1005
BlpI	GCTNAGC	2 cut(s)	472, 834
BlsI	GCNGC	5 cut(s)	442, 478, 768, 1003, 1006
Bme1390I	CCNGG	2 cut(s)	198, 1334
Bme18I	GGWCC	4 cut(s)	901, 937, 1071, 1201
BmgT120I	GGNCC	4 cut(s)	901, 937, 1071, 1201
BmiI	GGNNCC	6 cut(s)	106, 628, 731, 1072, 1073, 1203
BmrFI	CCNGG	2 cut(s)	198, 1334
BmrI	ACTGGG	1 cut(s)	212
BmsI	GCATC	3 cut(s)	96, 937, 1303
BmuI	ACTGGG	1 cut(s)	212
BplI	GAGNNNNNCTC	6 cut(s)	287, 319, 410, 442, 1257, 1289
BpmI	CTGGAG	1 cut(s)	392
Bpu1102I	GCTNAGC	2 cut(s)	472, 834
BpuEI	CTTGAG	3 cut(s)	873, 1060, 1277
BsaI	GGTCTC	1 cut(s)	871
BsaJI	CCNNGG	1 cut(s)	908
BsaWI	WCCGGW	1 cut(s)	383
BsaXI	ACNNNNNCTCC	2 cut(s)	978, 1008
Bsc4I	CCNNNNNNNGG	5 cut(s)	155, 370, 614, 910, 1087
Bse1I	ACTGG	3 cut(s)	108, 218, 1203
Bse3DI	GCAATG	2 cut(s)	1061, 1188
BseBI	CCWGG	2 cut(s)	198, 1334
BseDI	CCNNGG	1 cut(s)	908
BseGI	GGATG	5 cut(s)	173, 310, 352, 904, 952
BseLI	CCNNNNNNNGG	5 cut(s)	155, 370, 614, 910, 1087
BseMI	GCAATG	2 cut(s)	1061, 1188
BseMII	CTCAG	9 cut(s)	36, 84, 420, 510, 595, 674, 761, 942, 1097
BseNI	ACTGG	3 cut(s)	108, 218, 1203
BseRI	GAGGAG	3 cut(s)	75, 845, 1320
BseXI	GCAGC	5 cut(s)	427, 463, 778, 988, 1016
BsgI	GTGCAG	1 cut(s)	467
BshFI	GGCC	1 cut(s)	782
BshNI	GGYRCC	2 cut(s)	104, 729
BsiHKAI	GWGCWC	1 cut(s)	889
BsiSI	CCGG	2 cut(s)	384, 783
BslFI	GGGAC	5 cut(s)	18, 206, 678, 1057, 1187
BslI	CCNNNNNNNGG	5 cut(s)	155, 370, 614, 910, 1087
BsmAI	GTCTC	8 cut(s)	13, 244, 307, 533, 646, 871, 1295, 1361
BsmFI	GGGAC	5 cut(s)	18, 206, 678, 1057, 1187
BsmI	GAATGC	1 cut(s)	1339
BsnI	GGCC	1 cut(s)	782
Bso31I	GGTCTC	1 cut(s)	871
Bsp1286I	GDGCHC	4 cut(s)	161, 582, 697, 889
Bsp143I	GATC	1 cut(s)	564
Bsp1720I	GCTNAGC	2 cut(s)	472, 834
Bsp19I	CCATGG	1 cut(s)	908
BspACI	CCGC	1 cut(s)	1321
BspANI	GGCC	1 cut(s)	782
BspCNI	CTCAG	9 cut(s)	37, 83, 421, 511, 594, 673, 760, 943, 1098
BspHI	TCATGA	1 cut(s)	279
BspLI	GGNNCC	6 cut(s)	106, 628, 731, 1072, 1073, 1203
BspMAI	CTGCAG	3 cut(s)	445, 972, 1006
BspMI	ACCTGC	1 cut(s)	92
BspQI	GCTCTTC	1 cut(s)	166
BspT107I	GGYRCC	2 cut(s)	104, 729
BspTNI	GGTCTC	1 cut(s)	871
BsrDI	GCAATG	2 cut(s)	1061, 1188
BsrI	ACTGG	3 cut(s)	108, 218, 1203
BssECI	CCNNGG	1 cut(s)	908
BssMI	GATC	1 cut(s)	564
BssSI	CACGAG	1 cut(s)	1302
BssT1I	CCWWGG	1 cut(s)	908
Bst2BI	CACGAG	1 cut(s)	1302
Bst2UI	CCWGG	2 cut(s)	198, 1334
Bst4CI	ACNGT	1 cut(s)	1255
Bst6I	CTCTTC	5 cut(s)	166, 172, 190, 536, 588
BstAPI	GCANNNNNTGC	1 cut(s)	440
BstDSI	CCRYGG	1 cut(s)	908
BstENI	CCTNNNNNAGG	1 cut(s)	1085
BstF5I	GGATG	5 cut(s)	173, 310, 352, 904, 952
BstKTI	GATC	1 cut(s)	567
BstMAI	GTCTC	8 cut(s)	13, 244, 307, 533, 646, 871, 1295, 1361
BstMBI	GATC	1 cut(s)	564
BstMWI	GCNNNNNNNGC	3 cut(s)	440, 766, 1010
BstNI	CCWGG	2 cut(s)	198, 1334
BstNSI	RCATGY	1 cut(s)	1264
BstSCI	CCNGG	2 cut(s)	196, 1332
BstSFI	CTRYAG	3 cut(s)	441, 968, 1002
BstV1I	GCAGC	5 cut(s)	427, 463, 778, 988, 1016
BsuRI	GGCC	1 cut(s)	782
BtgI	CCRYGG	1 cut(s)	908
BtsCI	GGATG	5 cut(s)	173, 310, 352, 904, 952
BtsIMutI	CAGTG	2 cut(s)	115, 1196
BveI	ACCTGC	1 cut(s)	92
CaiI	CAGNNNCTG	2 cut(s)	440, 1105
CciI	TCATGA	1 cut(s)	279
Cfr13I	GGNCC	4 cut(s)	901, 937, 1071, 1201
CseI	GACGC	1 cut(s)	996
Csp6I	GTAC	3 cut(s)	105, 424, 730
CviAII	CATG	5 cut(s)	280, 568, 909, 1076, 1261
CviQI	GTAC	3 cut(s)	105, 424, 730
DpnI	GATC	1 cut(s)	566
DpnII	GATC	1 cut(s)	564
DraIII	CACNNNGTG	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	780
Eam1104I	CTCTTC	5 cut(s)	166, 172, 190, 536, 588
EarI	CTCTTC	5 cut(s)	166, 172, 190, 536, 588
EciI	GGCGGA	1 cut(s)	1310
Eco130I	CCWWGG	1 cut(s)	908
Eco24I	GRGCYC	3 cut(s)	161, 582, 697
Eco31I	GGTCTC	1 cut(s)	871
Eco47I	GGWCC	4 cut(s)	901, 937, 1071, 1201
EcoNI	CCTNNNNNAGG	1 cut(s)	1085
EcoO109I	RGGNCCY	1 cut(s)	1071
EcoRI	GAATTC	2 cut(s)	788, 1297
EcoRII	CCWGG	2 cut(s)	196, 1332
EcoT14I	CCWWGG	1 cut(s)	908
EcoT38I	GRGCYC	3 cut(s)	161, 582, 697
ErhI	CCWWGG	1 cut(s)	908
FaeI	CATG	5 cut(s)	283, 571, 912, 1079, 1264
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FaqI	GGGAC	5 cut(s)	18, 206, 678, 1057, 1187
FatI	CATG	5 cut(s)	279, 567, 908, 1075, 1260
FblI	GTMKAC	1 cut(s)	1257
Fnu4HI	GCNGC	5 cut(s)	441, 477, 767, 1002, 1005
FokI	GGATG	5 cut(s)	160, 297, 359, 891, 959
FriOI	GRGCYC	3 cut(s)	161, 582, 697
Fsp4HI	GCNGC	5 cut(s)	441, 477, 767, 1002, 1005
FspBI	CTAG	7 cut(s)	15, 228, 882, 1014, 1067, 1208, 1287
GluI	GCNGC	5 cut(s)	441, 477, 767, 1002, 1005
GsuI	CTGGAG	1 cut(s)	392
HaeIII	GGCC	1 cut(s)	782
HapII	CCGG	2 cut(s)	384, 783
HgaI	GACGC	1 cut(s)	996
Hin1II	CATG	5 cut(s)	283, 571, 912, 1079, 1264
HincII	GTYRAC	1 cut(s)	865
HindII	GTYRAC	1 cut(s)	865
HinfI	GANTC	4 cut(s)	21, 66, 551, 754
HpaII	CCGG	2 cut(s)	384, 783
HphI	GGTGA	3 cut(s)	353, 636, 1151
Hpy166II	GTNNAC	5 cut(s)	361, 600, 865, 1023, 1258
Hpy188I	TCNGA	5 cut(s)	315, 430, 493, 850, 1159
Hpy188III	TCNNGA	9 cut(s)	79, 223, 280, 890, 963, 1039, 1099, 1294, 1302
Hpy8I	GTNNAC	5 cut(s)	361, 600, 865, 1023, 1258
Hpy99I	CGWCG	1 cut(s)	990
HpyAV	CCTTC	2 cut(s)	728, 808
HpyCH4III	ACNGT	1 cut(s)	1255
HpyCH4V	TGCA	8 cut(s)	443, 464, 484, 970, 1004, 1114, 1148, 1339
HpyF10VI	GCNNNNNNNGC	3 cut(s)	440, 766, 1010
Hsp92II	CATG	5 cut(s)	283, 571, 912, 1079, 1264
KflI	GGGWCCC	1 cut(s)	1071
KpnI	GGTACC	2 cut(s)	108, 733
Kzo9I	GATC	1 cut(s)	564
LguI	GCTCTTC	1 cut(s)	166
LmnI	GCTCC	2 cut(s)	373, 1034
Lsp1109I	GCAGC	5 cut(s)	427, 463, 778, 988, 1016
LweI	GCATC	3 cut(s)	96, 937, 1303
MaeI	CTAG	7 cut(s)	15, 228, 882, 1014, 1067, 1208, 1287
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	1 cut(s)	566
MboI	GATC	1 cut(s)	564
MboII	GAAGA	7 cut(s)	153, 159, 177, 298, 523, 574, 605
MhlI	GDGCHC	4 cut(s)	161, 582, 697, 889
MluCI	AATT	6 cut(s)	523, 788, 819, 839, 1160, 1297
MlyI	GAGTC	1 cut(s)	15
MseI	TTAA	6 cut(s)	192, 536, 842, 978, 1083, 1119
MslI	CAYNNNNRTG	1 cut(s)	315
MspI	CCGG	2 cut(s)	384, 783
MspR9I	CCNGG	2 cut(s)	198, 1334
Mva1269I	GAATGC	1 cut(s)	1339
MvaI	CCWGG	2 cut(s)	198, 1334
MwoI	GCNNNNNNNGC	3 cut(s)	440, 766, 1010
NcoI	CCATGG	1 cut(s)	908
NdeII	GATC	1 cut(s)	564
NlaIII	CATG	5 cut(s)	283, 571, 912, 1079, 1264
NlaIV	GGNNCC	6 cut(s)	106, 628, 731, 1072, 1073, 1203
NmuCI	GTSAC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	1264
PagI	TCATGA	1 cut(s)	279
PciSI	GCTCTTC	1 cut(s)	166
PcsI	WCGNNNNNNNCGW	2 cut(s)	311, 994
PctI	GAATGC	1 cut(s)	1339
PfeI	GAWTC	3 cut(s)	66, 551, 754
PkrI	GCNGC	5 cut(s)	442, 478, 768, 1003, 1006
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PpuMI	RGGWCCY	1 cut(s)	1071
PshBI	ATTAAT	1 cut(s)	842
Psp5II	RGGWCCY	1 cut(s)	1071
Psp6I	CCWGG	2 cut(s)	196, 1332
PspGI	CCWGG	2 cut(s)	196, 1332
PspN4I	GGNNCC	6 cut(s)	106, 628, 731, 1072, 1073, 1203
PspPI	GGNCC	4 cut(s)	901, 937, 1071, 1201
PspPPI	RGGWCCY	1 cut(s)	1071
PstI	CTGCAG	3 cut(s)	445, 972, 1006
PstNI	CAGNNNCTG	2 cut(s)	440, 1105
RsaI	GTAC	3 cut(s)	106, 425, 731
RsaNI	GTAC	3 cut(s)	105, 424, 730
RseI	CAYNNNNRTG	1 cut(s)	315
SapI	GCTCTTC	1 cut(s)	166
SaqAI	TTAA	6 cut(s)	192, 536, 842, 978, 1083, 1119
SatI	GCNGC	5 cut(s)	441, 477, 767, 1002, 1005
Sau3AI	GATC	1 cut(s)	564
Sau96I	GGNCC	4 cut(s)	901, 937, 1071, 1201
SchI	GAGTC	1 cut(s)	15
ScrFI	CCNGG	2 cut(s)	198, 1334
SduI	GDGCHC	4 cut(s)	161, 582, 697, 889
SfaNI	GCATC	3 cut(s)	96, 937, 1303
SfcI	CTRYAG	3 cut(s)	441, 968, 1002
SinI	GGWCC	4 cut(s)	901, 937, 1071, 1201
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	3 cut(s)	888, 1039, 1292
SmoI	CTYRAG	3 cut(s)	888, 1039, 1292
Sse9I	AATT	6 cut(s)	523, 788, 819, 839, 1160, 1297
SsiI	CCGC	1 cut(s)	1321
SspMI	CTAG	7 cut(s)	15, 228, 882, 1014, 1067, 1208, 1287
StyD4I	CCNGG	2 cut(s)	196, 1332
StyI	CCWWGG	1 cut(s)	908
TaaI	ACNGT	1 cut(s)	1255
TaqI	TCGA	3 cut(s)	752, 985, 1224
TasI	AATT	6 cut(s)	523, 788, 819, 839, 1160, 1297
TfiI	GAWTC	3 cut(s)	66, 551, 754
Tru1I	TTAA	6 cut(s)	192, 536, 842, 978, 1083, 1119
Tru9I	TTAA	6 cut(s)	192, 536, 842, 978, 1083, 1119
TscAI	CASTG	2 cut(s)	115, 1203
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	5 cut(s)	440, 476, 766, 1001, 1004
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	282, 491, 1199
TspGWI	ACGGA	1 cut(s)	986
TspRI	CASTG	2 cut(s)	115, 1203
VpaK11BI	GGWCC	4 cut(s)	901, 937, 1071, 1201
VspI	ATTAAT	1 cut(s)	842
XagI	CCTNNNNNAGG	1 cut(s)	1085
XapI	RAATTY	4 cut(s)	788, 819, 1160, 1297
XceI	RCATGY	1 cut(s)	1264
XmiI	GTMKAC	1 cut(s)	1257
XspI	CTAG	7 cut(s)	15, 228, 882, 1014, 1067, 1208, 1287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.