Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005566

Physical Location & Seq

Genomic Coordinates Forward (+)

19472306 .. 19476600

Gene Structure 4295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g28310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCCCTGTTGAAGGTCCTTGCAGTAGAACCTGACCGTCGTGGAACAGCTTCTTCTGCACTTCAGAGTGAGTTCTTCACATCCGTGCCTCTTCCCAGTGATCTTTCCACTTTGCCCAAGTACCCACCGAGCAAGGAGTTTGATGCCAAGCTTCGAGATGAGGAAGCTAGAAGGTATATTACCTTTATAAATACATATATTAGCCCGGCAAAGAGCACCTGTGGTAAAGGACATGGAGGGAATTCCAAAGAATCAAAGGCTGTGCCAGCACCAGTTGGTACTGCTGGGCAGGAATCAAGAGAGAAGCAAAAAGTGCATAACCCAAAAAGCATCAGCGAGAAGTACATTCCTGAAAAGGATAGTGGCTCTGGCTTTCCTCTTGATCCTCCGAAAGGAGGAGCATCAAATGGCTTCTCCCATTCTGGCCAGTCAATTCAACCAAGTGCATATGGATCTACACGGAATATTGAGATGCGATCTGCACAGTCTAAGAATGGTGCAGTGGCAGGAGAAGCAATCAGTGGGTGGGTGCCTTGTGAGGCCGATTCATTTGTGAAACTGGACAAGGTGACACGTATGAGTTTGCGATTGCGTAATTTGCAAAGAGCTTGGCAGCAATCACCTGAAGGAAAAAAGATGCTAGAATTCAGAAAATCACTACTATCTTTTAGGAGAATCAGAGGTTGCTGCAAACAGTTGCACAAAATCAGTGATATCTGGGGAGACCGGATGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

246

Amino Acids

27.0

Weight (kDa)

9.74

Isoelectric Point (pI)

60.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005566)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G57700
fragaria_vesca	FvH4_5g28120 FvH4_5g28120 FvH4_5g28120 FvH4_5g28120 FvH4_5g28120 FvH4_5g28120 FvH4_5g28120 FvH4_5g28120 FvH4_5g28120 FvH4_5g28120 FvH4_5g28310
malus_domestica	MD08G1244800.v1.1 MD15G1439900.v1.1
prunus_persica	Prupe.1G582200_v2.0.a1 Prupe.1G582200_v2.0.a1 Prupe.1G582200_v2.0.a1 Prupe.1G582200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0220331
rosa_laevigata	RLG00000002229
rosa_multiflora	Rmu_sc0001136.1_g000085
rosa_roxburghii	Rroxscaffold_3G00239520
rosa_rugosa	Rorug07G0192900
rosa_samantha	Rh7AG334200 Rh7BG325100 Rh7CG351900 Rh7DG330900
rosa_wichuraiana	Rw7G028280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	188
AccB1I	GGYRCC	1 cut(s)	529
AclWI	GGATC	2 cut(s)	377, 460
AcoI	YGGCCR	1 cut(s)	424
AcsI	RAATTY	2 cut(s)	241, 644
AcuI	CTGAAG	2 cut(s)	47, 645
AfaI	GTAC	3 cut(s)	122, 280, 344
AfiI	CCNNNNNNNGG	3 cut(s)	13, 392, 395
AflIII	ACRYGT	1 cut(s)	572
AgsI	TTSAA	2 cut(s)	13, 437
AleI	CACNNNNGTG	1 cut(s)	83
AluBI	AGCT	4 cut(s)	50, 151, 167, 608
AluI	AGCT	4 cut(s)	50, 151, 167, 608
Alw21I	GWGCWC	1 cut(s)	218
Alw26I	GTCTC	1 cut(s)	717
AlwI	GGATC	2 cut(s)	377, 460
AoxI	GGCC	3 cut(s)	3, 424, 540
ApeKI	GCWGC	2 cut(s)	613, 687
ApoI	RAATTY	2 cut(s)	241, 644
Asp700I	GAANNNNTTC	1 cut(s)	49
AspS9I	GGNCC	2 cut(s)	4, 16
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	2 cut(s)	580, 612
AvaII	GGWCC	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	426
BanI	GGYRCC	1 cut(s)	529
BarI	GAAGNNNNNNTAC	2 cut(s)	163, 195
Bbv12I	GWGCWC	1 cut(s)	218
BbvI	GCAGC	2 cut(s)	625, 674
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	1 cut(s)	717
BfaI	CTAG	2 cut(s)	168, 641
BisI	GCNGC	2 cut(s)	614, 688
BlsI	GCNGC	2 cut(s)	615, 689
Bme1390I	CCNGG	1 cut(s)	206
Bme18I	GGWCC	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	4, 16
BmiI	GGNNCC	1 cut(s)	531
BmrFI	CCNGG	1 cut(s)	206
BmrI	ACTGGG	1 cut(s)	90
BmsI	GCATC	5 cut(s)	133, 339, 410, 462, 627
BmuI	ACTGGG	1 cut(s)	90
BpuMI	CCSGG	1 cut(s)	206
BsaAI	YACGTR	1 cut(s)	575
BsaI	GGTCTC	1 cut(s)	717
BsaWI	WCCGGW	1 cut(s)	726
Bsc4I	CCNNNNNNNGG	3 cut(s)	13, 392, 395
Bse1I	ACTGG	4 cut(s)	96, 272, 427, 564
BseGI	GGATG	2 cut(s)	80, 735
BseLI	CCNNNNNNNGG	3 cut(s)	13, 392, 395
BseNI	ACTGG	4 cut(s)	96, 272, 427, 564
BseRI	GAGGAG	1 cut(s)	411
BseXI	GCAGC	2 cut(s)	625, 674
BseYI	CCCAGC	1 cut(s)	284
BsgI	GTGCAG	3 cut(s)	42, 465, 519
BshFI	GGCC	3 cut(s)	5, 426, 542
BshNI	GGYRCC	1 cut(s)	529
BsiHKAI	GWGCWC	1 cut(s)	218
BsiSI	CCGG	2 cut(s)	206, 727
BslI	CCNNNNNNNGG	3 cut(s)	13, 392, 395
BsmAI	GTCTC	1 cut(s)	717
BsnI	GGCC	3 cut(s)	5, 426, 542
Bso31I	GGTCTC	1 cut(s)	717
Bsp1286I	GDGCHC	1 cut(s)	218
Bsp143I	GATC	4 cut(s)	100, 382, 452, 476
BspANI	GGCC	3 cut(s)	5, 426, 542
BspLI	GGNNCC	1 cut(s)	531
BspPI	GGATC	2 cut(s)	377, 460
BspT107I	GGYRCC	1 cut(s)	529
BspTNI	GGTCTC	1 cut(s)	717
BsrI	ACTGG	4 cut(s)	96, 272, 427, 564
BssMI	GATC	4 cut(s)	100, 382, 452, 476
Bst4CI	ACNGT	3 cut(s)	38, 486, 696
Bst6I	CTCTTC	1 cut(s)	96
BstAPI	GCANNNNNTGC	1 cut(s)	313
BstBAI	YACGTR	1 cut(s)	575
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	1 cut(s)	489
BstENI	CCTNNNNNAGG	2 cut(s)	11, 390
BstF5I	GGATG	2 cut(s)	80, 735
BstKTI	GATC	4 cut(s)	103, 385, 455, 479
BstMAI	GTCTC	1 cut(s)	717
BstMBI	GATC	4 cut(s)	100, 382, 452, 476
BstMWI	GCNNNNNNNGC	5 cut(s)	56, 266, 313, 512, 598
BstSCI	CCNGG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	625, 674
BstX2I	RGATCY	1 cut(s)	452
BstYI	RGATCY	1 cut(s)	452
BsuRI	GGCC	3 cut(s)	5, 426, 542
BtsCI	GGATG	2 cut(s)	80, 735
BtsI	GCAGTG	1 cut(s)	507
BtsIMutI	CAGTG	4 cut(s)	103, 507, 526, 715
Cac8I	GCNNGC	1 cut(s)	267
Cfr13I	GGNCC	2 cut(s)	4, 16
Csp6I	GTAC	3 cut(s)	121, 279, 343
CviAII	CATG	1 cut(s)	233
CviQI	GTAC	3 cut(s)	121, 279, 343
DdeI	CTNAG	1 cut(s)	489
DpnI	GATC	4 cut(s)	102, 384, 454, 478
DpnII	GATC	4 cut(s)	100, 382, 452, 476
EaeI	YGGCCR	1 cut(s)	424
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco31I	GGTCTC	1 cut(s)	717
Eco32I	GATATC	1 cut(s)	715
Eco47I	GGWCC	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	47, 645
EcoNI	CCTNNNNNAGG	2 cut(s)	11, 390
EcoO109I	RGGNCCY	1 cut(s)	16
EcoRI	GAATTC	2 cut(s)	241, 644
EcoRV	GATATC	1 cut(s)	715
FaeI	CATG	1 cut(s)	236
FaiI	YATR	9 cut(s)	177, 188, 196, 198, 234, 318, 448, 450, 578
FatI	CATG	1 cut(s)	232
FauNDI	CATATG	1 cut(s)	448
Fnu4HI	GCNGC	2 cut(s)	614, 688
FokI	GGATG	1 cut(s)	67
Fsp4HI	GCNGC	2 cut(s)	614, 688
FspBI	CTAG	2 cut(s)	168, 641
GluI	GCNGC	2 cut(s)	614, 688
GsaI	CCCAGC	1 cut(s)	288
HaeIII	GGCC	3 cut(s)	5, 426, 542
HapII	CCGG	2 cut(s)	206, 727
Hin1II	CATG	1 cut(s)	236
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	4 cut(s)	251, 293, 545, 675
HpaII	CCGG	2 cut(s)	206, 727
HphI	GGTGA	2 cut(s)	580, 612
Hpy188I	TCNGA	4 cut(s)	66, 390, 650, 680
Hpy188III	TCNNGA	4 cut(s)	155, 297, 350, 380
Hpy99I	CGWCG	1 cut(s)	42
HpyAV	CCTTC	3 cut(s)	7, 165, 620
HpyCH4III	ACNGT	3 cut(s)	38, 486, 696
HpyCH4IV	ACGT	1 cut(s)	574
HpyCH4V	TGCA	9 cut(s)	23, 59, 316, 446, 482, 500, 601, 690, 700
HpyF10VI	GCNNNNNNNGC	5 cut(s)	56, 266, 313, 512, 598
HpyF3I	CTNAG	1 cut(s)	489
HpySE526I	ACGT	1 cut(s)	574
Hsp92II	CATG	1 cut(s)	236
Kzo9I	GATC	4 cut(s)	100, 382, 452, 476
LmnI	GCTCC	1 cut(s)	398
Lsp1109I	GCAGC	2 cut(s)	625, 674
LweI	GCATC	5 cut(s)	133, 339, 410, 462, 627
MaeI	CTAG	2 cut(s)	168, 641
MaeII	ACGT	1 cut(s)	574
MaeIII	GTNAC	1 cut(s)	568
MalI	GATC	4 cut(s)	102, 384, 454, 478
MboI	GATC	4 cut(s)	100, 382, 452, 476
MboII	GAAGA	3 cut(s)	45, 67, 83
MflI	RGATCY	1 cut(s)	452
MhlI	GDGCHC	1 cut(s)	218
MlsI	TGGCCA	1 cut(s)	426
MluCI	AATT	4 cut(s)	241, 432, 595, 644
MluNI	TGGCCA	1 cut(s)	426
MnlI	CCTC	8 cut(s)	99, 154, 230, 387, 389, 396, 532, 674
Mox20I	TGGCCA	1 cut(s)	426
MroXI	GAANNNNTTC	1 cut(s)	49
MscI	TGGCCA	1 cut(s)	426
MslI	CAYNNNNRTG	1 cut(s)	83
Msp20I	TGGCCA	1 cut(s)	426
MspI	CCGG	2 cut(s)	206, 727
MspR9I	CCNGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	5 cut(s)	56, 266, 313, 512, 598
NciI	CCSGG	1 cut(s)	206
NdeI	CATATG	1 cut(s)	448
NdeII	GATC	4 cut(s)	100, 382, 452, 476
NlaIII	CATG	1 cut(s)	236
NlaIV	GGNNCC	1 cut(s)	531
NmuCI	GTSAC	1 cut(s)	568
OliI	CACNNNNGTG	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	49
PfeI	GAWTC	4 cut(s)	251, 293, 545, 675
PkrI	GCNGC	2 cut(s)	615, 689
Ppu21I	YACGTR	1 cut(s)	575
PpuMI	RGGWCCY	1 cut(s)	16
PsiI	TTATAA	1 cut(s)	188
Psp5II	RGGWCCY	1 cut(s)	16
PspFI	CCCAGC	1 cut(s)	284
PspN4I	GGNNCC	1 cut(s)	531
PspPI	GGNCC	2 cut(s)	4, 16
PspPPI	RGGWCCY	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	452
RsaI	GTAC	3 cut(s)	122, 280, 344
RsaNI	GTAC	3 cut(s)	121, 279, 343
RseI	CAYNNNNRTG	1 cut(s)	83
SatI	GCNGC	2 cut(s)	614, 688
Sau3AI	GATC	4 cut(s)	100, 382, 452, 476
Sau96I	GGNCC	2 cut(s)	4, 16
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	218
SfaNI	GCATC	5 cut(s)	133, 339, 410, 462, 627
SinI	GGWCC	1 cut(s)	16
SmiMI	CAYNNNNRTG	1 cut(s)	83
Sse9I	AATT	4 cut(s)	241, 432, 595, 644
SspI	AATATT	1 cut(s)	466
SspMI	CTAG	2 cut(s)	168, 641
StyD4I	CCNGG	1 cut(s)	204
TaaI	ACNGT	3 cut(s)	38, 486, 696
TaiI	ACGT	1 cut(s)	577
TaqI	TCGA	1 cut(s)	154
TasI	AATT	4 cut(s)	241, 432, 595, 644
TatI	WGTACW	1 cut(s)	342
TfiI	GAWTC	4 cut(s)	251, 293, 545, 675
TscAI	CASTG	4 cut(s)	103, 507, 526, 715
TseFI	GTSAC	1 cut(s)	568
TseI	GCWGC	2 cut(s)	613, 687
Tsp45I	GTSAC	1 cut(s)	568
TspDTI	ATGAA	1 cut(s)	537
TspGWI	ACGGA	2 cut(s)	73, 475
TspRI	CASTG	4 cut(s)	103, 507, 526, 715
VpaK11BI	GGWCC	1 cut(s)	16
XagI	CCTNNNNNAGG	2 cut(s)	11, 390
XapI	RAATTY	2 cut(s)	241, 644
XmnI	GAANNNNTTC	1 cut(s)	49
XspI	CTAG	2 cut(s)	168, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.