Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g33340 |
| malus_domestica | MD08G1213200.v1.1 |
| prunus_persica | Prupe.1G544500_v2.0.a1 |
| pyrus_communis | pycom08g18310 |
| rosa_chinensis | RchiOBHm_Chr7g0232061 |
| rosa_laevigata | RLG00000001396 |
| rosa_multiflora | Rmu_sc0004618.1_g000017 Rmu_sc0009837.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00228850 |
| rosa_rugosa | Rorug07G0268800 |
| rosa_samantha | Rh7AG423200 Rh7BG397400 Rh7CG443600 Rh7DG415500 |
| rosa_wichuraiana | Rw7G035010 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1170 |
| AccI | GTMKAC | 1 cut(s) | 1403 |
| AccII | CGCG | 1 cut(s) | 648 |
| AciI | CCGC | 3 cut(s) | 842, 933, 1420 |
| AclWI | GGATC | 3 cut(s) | 101, 1076, 1492 |
| AcsI | RAATTY | 3 cut(s) | 130, 151, 984 |
| AcuI | CTGAAG | 2 cut(s) | 1053, 1473 |
| AfaI | GTAC | 2 cut(s) | 17, 1006 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 192, 579, 782 |
| AflII | CTTAAG | 1 cut(s) | 485 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 284, 316, 769, 801 |
| AluBI | AGCT | 5 cut(s) | 376, 847, 859, 1037, 1505 |
| AluI | AGCT | 5 cut(s) | 376, 847, 859, 1037, 1505 |
| Alw21I | GWGCWC | 2 cut(s) | 800, 1078 |
| Alw26I | GTCTC | 2 cut(s) | 103, 971 |
| AlwI | GGATC | 3 cut(s) | 101, 1076, 1492 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 209 |
| Ama87I | CYCGRG | 2 cut(s) | 780, 1185 |
| ApeKI | GCWGC | 2 cut(s) | 856, 1299 |
| ApoI | RAATTY | 3 cut(s) | 130, 151, 984 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 8 |
| AspLEI | GCGC | 1 cut(s) | 1171 |
| AsuHPI | GGTGA | 3 cut(s) | 51, 301, 929 |
| AvaI | CYCGRG | 2 cut(s) | 780, 1185 |
| BaeGI | GKGCMC | 1 cut(s) | 203 |
| Bbv12I | GWGCWC | 2 cut(s) | 800, 1078 |
| BbvI | GCAGC | 2 cut(s) | 868, 1311 |
| BceAI | ACGGC | 1 cut(s) | 806 |
| BciVI | GTATCC | 1 cut(s) | 718 |
| BclI | TGATCA | 1 cut(s) | 804 |
| BcoDI | GTCTC | 2 cut(s) | 103, 971 |
| BfaI | CTAG | 4 cut(s) | 95, 1143, 1307, 1476 |
| BfrI | CTTAAG | 1 cut(s) | 485 |
| BfuI | GTATCC | 1 cut(s) | 718 |
| BisI | GCNGC | 4 cut(s) | 857, 933, 1300, 1421 |
| BlsI | GCNGC | 4 cut(s) | 858, 934, 1301, 1422 |
| BmeT110I | CYCGRG | 2 cut(s) | 780, 1185 |
| BmiI | GGNNCC | 2 cut(s) | 774, 931 |
| BmrI | ACTGGG | 2 cut(s) | 201, 567 |
| BmsI | GCATC | 3 cut(s) | 523, 625, 843 |
| BmuI | ACTGGG | 2 cut(s) | 201, 567 |
| BpuEI | CTTGAG | 1 cut(s) | 1196 |
| Bsa29I | ATCGAT | 1 cut(s) | 1428 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1489 |
| BsaI | GGTCTC | 1 cut(s) | 971 |
| BsaJI | CCNNGG | 4 cut(s) | 597, 613, 639, 822 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 192, 579, 782 |
| Bse1I | ACTGG | 2 cut(s) | 196, 573 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1489 |
| BseCI | ATCGAT | 1 cut(s) | 1428 |
| BseDI | CCNNGG | 4 cut(s) | 597, 613, 639, 822 |
| BseGI | GGATG | 1 cut(s) | 67 |
| BseJI | GATNNNNATC | 1 cut(s) | 1489 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 192, 579, 782 |
| BseNI | ACTGG | 2 cut(s) | 196, 573 |
| BseRI | GAGGAG | 1 cut(s) | 524 |
| BseSI | GKGCMC | 1 cut(s) | 203 |
| BseXI | GCAGC | 2 cut(s) | 868, 1311 |
| Bsh1236I | CGCG | 1 cut(s) | 648 |
| BshVI | ATCGAT | 1 cut(s) | 1428 |
| BsiHKAI | GWGCWC | 2 cut(s) | 800, 1078 |
| BsiHKCI | CYCGRG | 2 cut(s) | 780, 1185 |
| BsiSI | CCGG | 1 cut(s) | 1125 |
| BslFI | GGGAC | 3 cut(s) | 205, 671, 1392 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 192, 579, 782 |
| BsmAI | GTCTC | 2 cut(s) | 103, 971 |
| BsmFI | GGGAC | 3 cut(s) | 205, 671, 1392 |
| BsmI | GAATGC | 1 cut(s) | 1171 |
| Bso31I | GGTCTC | 1 cut(s) | 971 |
| BsoBI | CYCGRG | 2 cut(s) | 780, 1185 |
| Bsp1286I | GDGCHC | 3 cut(s) | 203, 800, 1078 |
| Bsp143I | GATC | 6 cut(s) | 106, 242, 804, 1081, 1390, 1484 |
| Bsp19I | CCATGG | 2 cut(s) | 597, 639 |
| BspACI | CCGC | 3 cut(s) | 842, 933, 1420 |
| BspDI | ATCGAT | 1 cut(s) | 1428 |
| BspFNI | CGCG | 1 cut(s) | 648 |
| BspLI | GGNNCC | 2 cut(s) | 774, 931 |
| BspPI | GGATC | 3 cut(s) | 101, 1076, 1492 |
| BspTI | CTTAAG | 1 cut(s) | 485 |
| BspTNI | GGTCTC | 1 cut(s) | 971 |
| BsrI | ACTGG | 2 cut(s) | 196, 573 |
| BssECI | CCNNGG | 4 cut(s) | 597, 613, 639, 822 |
| BssMI | GATC | 6 cut(s) | 106, 242, 804, 1081, 1390, 1484 |
| BssNAI | GTATAC | 1 cut(s) | 1404 |
| BssT1I | CCWWGG | 3 cut(s) | 597, 613, 639 |
| Bst1107I | GTATAC | 1 cut(s) | 1404 |
| Bst4CI | ACNGT | 1 cut(s) | 736 |
| Bst6I | CTCTTC | 3 cut(s) | 25, 118, 1226 |
| BstAFI | CTTAAG | 1 cut(s) | 485 |
| BstC8I | GCNNGC | 3 cut(s) | 646, 1062, 1066 |
| BstDEI | CTNAG | 2 cut(s) | 377, 1382 |
| BstDSI | CCRYGG | 3 cut(s) | 597, 639, 822 |
| BstF5I | GGATG | 1 cut(s) | 67 |
| BstFNI | CGCG | 1 cut(s) | 648 |
| BstHHI | GCGC | 1 cut(s) | 1171 |
| BstKTI | GATC | 6 cut(s) | 109, 245, 807, 1084, 1393, 1487 |
| BstMAI | GTCTC | 2 cut(s) | 103, 971 |
| BstMBI | GATC | 6 cut(s) | 106, 242, 804, 1081, 1390, 1484 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 853 |
| BstNSI | RCATGY | 1 cut(s) | 1269 |
| BstSLI | GKGCMC | 1 cut(s) | 203 |
| BstUI | CGCG | 1 cut(s) | 648 |
| BstV1I | GCAGC | 2 cut(s) | 868, 1311 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 320 |
| BstZ17I | GTATAC | 1 cut(s) | 1404 |
| Bsu15I | ATCGAT | 1 cut(s) | 1428 |
| BsuI | GTATCC | 1 cut(s) | 718 |
| BsuTUI | ATCGAT | 1 cut(s) | 1428 |
| BtgI | CCRYGG | 3 cut(s) | 597, 639, 822 |
| BtsCI | GGATG | 1 cut(s) | 67 |
| BtsIMutI | CAGTG | 2 cut(s) | 823, 1404 |
| Cac8I | GCNNGC | 3 cut(s) | 646, 1062, 1066 |
| CaiI | CAGNNNCTG | 1 cut(s) | 209 |
| CfoI | GCGC | 1 cut(s) | 1171 |
| ClaI | ATCGAT | 1 cut(s) | 1428 |
| CseI | GACGC | 1 cut(s) | 207 |
| Csp6I | GTAC | 2 cut(s) | 16, 1005 |
| CviAII | CATG | 8 cut(s) | 598, 640, 962, 1019, 1116, 1199, 1261, 1266 |
| CviQI | GTAC | 2 cut(s) | 16, 1005 |
| DdeI | CTNAG | 2 cut(s) | 377, 1382 |
| DpnI | GATC | 6 cut(s) | 108, 244, 806, 1083, 1392, 1486 |
| DpnII | GATC | 6 cut(s) | 106, 242, 804, 1081, 1390, 1484 |
| Eam1104I | CTCTTC | 3 cut(s) | 25, 118, 1226 |
| EarI | CTCTTC | 3 cut(s) | 25, 118, 1226 |
| EciI | GGCGGA | 1 cut(s) | 857 |
| Eco130I | CCWWGG | 3 cut(s) | 597, 613, 639 |
| Eco31I | GGTCTC | 1 cut(s) | 971 |
| Eco57I | CTGAAG | 2 cut(s) | 1053, 1473 |
| Eco88I | CYCGRG | 2 cut(s) | 780, 1185 |
| EcoRI | GAATTC | 1 cut(s) | 130 |
| EcoT14I | CCWWGG | 3 cut(s) | 597, 613, 639 |
| EcoT22I | ATGCAT | 1 cut(s) | 1200 |
| ErhI | CCWWGG | 3 cut(s) | 597, 613, 639 |
| FaeI | CATG | 8 cut(s) | 601, 643, 965, 1022, 1119, 1202, 1264, 1269 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 520, 552, 666, 698, 1429, 1461 |
| FaqI | GGGAC | 3 cut(s) | 205, 671, 1392 |
| FatI | CATG | 8 cut(s) | 597, 639, 961, 1018, 1115, 1198, 1260, 1265 |
| FauNDI | CATATG | 1 cut(s) | 1249 |
| FbaI | TGATCA | 1 cut(s) | 804 |
| FblI | GTMKAC | 1 cut(s) | 1403 |
| Fnu4HI | GCNGC | 4 cut(s) | 857, 933, 1300, 1421 |
| FokI | GGATG | 1 cut(s) | 54 |
| Fsp4HI | GCNGC | 4 cut(s) | 857, 933, 1300, 1421 |
| FspBI | CTAG | 4 cut(s) | 95, 1143, 1307, 1476 |
| FspI | TGCGCA | 1 cut(s) | 1170 |
| GlaI | GCGC | 1 cut(s) | 1170 |
| GluI | GCNGC | 4 cut(s) | 857, 933, 1300, 1421 |
| HapII | CCGG | 1 cut(s) | 1125 |
| HgaI | GACGC | 1 cut(s) | 207 |
| HhaI | GCGC | 1 cut(s) | 1171 |
| Hin1II | CATG | 8 cut(s) | 601, 643, 965, 1022, 1119, 1202, 1264, 1269 |
| Hin6I | GCGC | 1 cut(s) | 1169 |
| HinP1I | GCGC | 1 cut(s) | 1169 |
| HinfI | GANTC | 5 cut(s) | 206, 292, 391, 449, 475 |
| HpaII | CCGG | 1 cut(s) | 1125 |
| HphI | GGTGA | 3 cut(s) | 51, 301, 929 |
| Hpy166II | GTNNAC | 1 cut(s) | 1404 |
| Hpy188I | TCNGA | 1 cut(s) | 865 |
| Hpy188III | TCNNGA | 4 cut(s) | 127, 407, 808, 1079 |
| Hpy8I | GTNNAC | 1 cut(s) | 1404 |
| Hpy99I | CGWCG | 1 cut(s) | 181 |
| HpyAV | CCTTC | 5 cut(s) | 93, 423, 427, 718, 1431 |
| HpyCH4III | ACNGT | 1 cut(s) | 736 |
| HpyCH4V | TGCA | 5 cut(s) | 566, 856, 1043, 1198, 1299 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 853 |
| HpyF3I | CTNAG | 2 cut(s) | 377, 1382 |
| Hsp92II | CATG | 8 cut(s) | 601, 643, 965, 1022, 1119, 1202, 1264, 1269 |
| HspAI | GCGC | 1 cut(s) | 1169 |
| Ksp22I | TGATCA | 1 cut(s) | 804 |
| Kzo9I | GATC | 6 cut(s) | 106, 242, 804, 1081, 1390, 1484 |
| LmnI | GCTCC | 4 cut(s) | 844, 929, 1081, 1502 |
| Lsp1109I | GCAGC | 2 cut(s) | 868, 1311 |
| LweI | GCATC | 3 cut(s) | 523, 625, 843 |
| MaeI | CTAG | 4 cut(s) | 95, 1143, 1307, 1476 |
| MaeIII | GTNAC | 3 cut(s) | 407, 1109, 1149 |
| MalI | GATC | 6 cut(s) | 108, 244, 806, 1083, 1392, 1486 |
| MboI | GATC | 6 cut(s) | 106, 242, 804, 1081, 1390, 1484 |
| MboII | GAAGA | 6 cut(s) | 12, 105, 1243, 1253, 1346, 1466 |
| MhlI | GDGCHC | 3 cut(s) | 203, 800, 1078 |
| MluCI | AATT | 9 cut(s) | 130, 140, 151, 171, 628, 984, 991, 1225, 1364 |
| MlyI | GAGTC | 3 cut(s) | 400, 458, 484 |
| Mph1103I | ATGCAT | 1 cut(s) | 1200 |
| MroXI | GAANNNNTTC | 1 cut(s) | 8 |
| MseI | TTAA | 6 cut(s) | 306, 339, 369, 486, 1001, 1224 |
| MslI | CAYNNNNRTG | 1 cut(s) | 318 |
| MspA1I | CMGCKG | 1 cut(s) | 935 |
| MspCI | CTTAAG | 1 cut(s) | 485 |
| MspI | CCGG | 1 cut(s) | 1125 |
| Mva1269I | GAATGC | 1 cut(s) | 1171 |
| MvnI | CGCG | 1 cut(s) | 648 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 853 |
| NcoI | CCATGG | 2 cut(s) | 597, 639 |
| NdeI | CATATG | 1 cut(s) | 1249 |
| NdeII | GATC | 6 cut(s) | 106, 242, 804, 1081, 1390, 1484 |
| NlaIII | CATG | 8 cut(s) | 601, 643, 965, 1022, 1119, 1202, 1264, 1269 |
| NlaIV | GGNNCC | 2 cut(s) | 774, 931 |
| NmuCI | GTSAC | 2 cut(s) | 407, 1109 |
| NsbI | TGCGCA | 1 cut(s) | 1170 |
| NsiI | ATGCAT | 1 cut(s) | 1200 |
| NspI | RCATGY | 1 cut(s) | 1269 |
| PaeR7I | CTCGAG | 2 cut(s) | 780, 1185 |
| PctI | GAATGC | 1 cut(s) | 1171 |
| PdmI | GAANNNNTTC | 1 cut(s) | 8 |
| PfeI | GAWTC | 2 cut(s) | 206, 292 |
| PflFI | GACNNNGTC | 1 cut(s) | 1334 |
| PkrI | GCNGC | 4 cut(s) | 858, 934, 1301, 1422 |
| PleI | GAGTC | 3 cut(s) | 399, 457, 483 |
| PpsI | GAGTC | 3 cut(s) | 399, 457, 483 |
| PspN4I | GGNNCC | 2 cut(s) | 774, 931 |
| PspXI | VCTCGAGB | 2 cut(s) | 780, 1185 |
| PstNI | CAGNNNCTG | 1 cut(s) | 209 |
| PsyI | GACNNNGTC | 1 cut(s) | 1334 |
| RsaI | GTAC | 2 cut(s) | 17, 1006 |
| RsaNI | GTAC | 2 cut(s) | 16, 1005 |
| RseI | CAYNNNNRTG | 1 cut(s) | 318 |
| SaqAI | TTAA | 6 cut(s) | 306, 339, 369, 486, 1001, 1224 |
| SatI | GCNGC | 4 cut(s) | 857, 933, 1300, 1421 |
| Sau3AI | GATC | 6 cut(s) | 106, 242, 804, 1081, 1390, 1484 |
| SchI | GAGTC | 3 cut(s) | 400, 458, 484 |
| SduI | GDGCHC | 3 cut(s) | 203, 800, 1078 |
| SfaNI | GCATC | 3 cut(s) | 523, 625, 843 |
| Sfr274I | CTCGAG | 2 cut(s) | 780, 1185 |
| SlaI | CTCGAG | 2 cut(s) | 780, 1185 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 318 |
| SmlI | CTYRAG | 4 cut(s) | 485, 780, 1185, 1211 |
| SmoI | CTYRAG | 4 cut(s) | 485, 780, 1185, 1211 |
| Sse9I | AATT | 9 cut(s) | 130, 140, 151, 171, 628, 984, 991, 1225, 1364 |
| SsiI | CCGC | 3 cut(s) | 842, 933, 1420 |
| SspI | AATATT | 1 cut(s) | 1101 |
| SspMI | CTAG | 4 cut(s) | 95, 1143, 1307, 1476 |
| StyI | CCWWGG | 3 cut(s) | 597, 613, 639 |
| TaaI | ACNGT | 1 cut(s) | 736 |
| TaqI | TCGA | 6 cut(s) | 128, 241, 781, 1155, 1186, 1428 |
| TasI | AATT | 9 cut(s) | 130, 140, 151, 171, 628, 984, 991, 1225, 1364 |
| TauI | GCSGC | 2 cut(s) | 935, 1423 |
| TfiI | GAWTC | 2 cut(s) | 206, 292 |
| Tru1I | TTAA | 6 cut(s) | 306, 339, 369, 486, 1001, 1224 |
| Tru9I | TTAA | 6 cut(s) | 306, 339, 369, 486, 1001, 1224 |
| TscAI | CASTG | 2 cut(s) | 823, 1404 |
| TseFI | GTSAC | 2 cut(s) | 407, 1109 |
| TseI | GCWGC | 2 cut(s) | 856, 1299 |
| Tsp45I | GTSAC | 2 cut(s) | 407, 1109 |
| TspDTI | ATGAA | 9 cut(s) | 17, 56, 482, 581, 755, 819, 1110, 1178, 1266 |
| TspGWI | ACGGA | 2 cut(s) | 165, 325 |
| TspRI | CASTG | 2 cut(s) | 823, 1404 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1334 |
| Vha464I | CTTAAG | 1 cut(s) | 485 |
| XapI | RAATTY | 3 cut(s) | 130, 151, 984 |
| XceI | RCATGY | 1 cut(s) | 1269 |
| XhoI | CTCGAG | 2 cut(s) | 780, 1185 |
| XmiI | GTMKAC | 1 cut(s) | 1403 |
| XmnI | GAANNNNTTC | 1 cut(s) | 8 |
| XspI | CTAG | 4 cut(s) | 95, 1143, 1307, 1476 |
| Zsp2I | ATGCAT | 1 cut(s) | 1200 |