RchiOBHm_Chr7g0232061

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016352
Physical Location & Seq
Reverse (-)
55943169 .. 55945113
1945 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20798

Sequence Viewer

Length: 1512 bp
ATGAACAGGTTCAGGTACTCTTCCCACAATCTTTACTCTTTATTATCACAACCCAAACCACCAGTTCATGCTCCCACTTTGCTTCCCCAAACCCTAGTCTCACTTGAGCCCTCTTCGATTGATTTCTTGAATTCAAATCAATTTCACTCAAATTCCGCTTGTAGTTCTGGAATTCCCTTGGTTTCCTCAACTGGGTCATCCTCAGATTCTGCTTCAGCATCCCCATTTCCTCTAAAGTTTCGATCTTTACGTTTGTATAGGGGTGGTTATATTGATAAGGGCTTGTTGGTGAATCTTTACTTGCTTAAACACCAATGTTATGGGACTTCAAGTTCTGTTAAGCATGATCGAACTGATAATGTGGGTGTGAAAGAGGTTAGATACTTTGCGAGTCCTAGGCAAGTTCATGACATTATAGGTATGATTAGAAGGAAGGACAATGATGTGGAGTCAAAGTTGAGTTCAATGAATGTAAGTCTAACTCTTAAGATGTGTACTCGGATTTTTAAGGAGTTGAATCACCTGAAAACAGATGCTTTGGGTGTGTGTGATTTGACTAGGTTTTCACACCCCAGTTGTAGGAATGATGTTCGTTCCATGATTATTGATAACCTTGGGAGGTTAGGGAATTATGATGCCATGTCTCGCGTTTTGAGGGAGTTTGGTGAAAGAAAGTGTTTTGTTCTTCCGTGGGCATTTGAGTTTGTATCCCTTTCGCCCTCAAAGGAGGCTACTGTGAGGAAAGTGGTGGAGGTGTTGAAGGCAGTTGAGGGACCGACTGGAGCCTCTGGTTTGTGCTCTTTGATTAAGAAGTGCAGTGCCATGGGTTCGTTTGAAATGGCGGAGTTGGTGATGCAGCTATCGGAGAGGAAGGCAAGTTATTACAGTATAATGATAAAAGAAAAATGTGGAAATGGTGATTTTGATGGAGCCGTGAAGTTGCTTGAGGTAATGAGGGAACATGGTTTTGATCCGGGAGCCAAAACTTACAATTATGTATTCAGTAGCTTATGTAAGAATGATAAATCTGCTGAAGCTACTGCATTGTTTGAGGAAATGCTGGAAAGGAAGTGTGCTCCTGATCCTATAACCTATGAAATATTTGTTTGTTACTCATGTAAAGTGGGAAACTTTGATTTGGCTAGAAAGTTACTCGATAGAATGAATGTGCTAGGCATTGAACCTCGAGTATCAATGCATGCTGCCATTGTCAAGGCTTATTTTAATTTGAACAGATTTGAAGAAGCATATCAGTACGTCATTGCAACTGATAGATACAACTGCTTTCCTGCGGTTTACAGCATTCTAGCAAGGCTTTATGTCAAAGCAGATATGGTCATCGTTGCCTACAGTCTTCTCACCGAAATGATTAGTAAGGGACTTAGACCAGATCAGTCAGTGTATTCATATGTTTCCAGGCGGCTCATCAATACAGGAAGGAGTGTTTTGGCTGAAGATTTGAAAAGTAGGCTCTCTCGTTTTGGATCAAAATCAACTATGGGAGCTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

503

Amino Acids

56.37

Weight (kDa)

9.15

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 295 - 339 4e-09 PPR repeat family
PPR_long PF17177 296 - 418 2.1e-06 Pentacotripeptide-repeat region of PRORP
PPR_2 PF13041 325 - 368 3.1e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016352)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g33340
malus_domestica MD08G1213200.v1.1
prunus_persica Prupe.1G544500_v2.0.a1
pyrus_communis pycom08g18310
rosa_chinensis RchiOBHm_Chr7g0232061
rosa_laevigata RLG00000001396
rosa_multiflora Rmu_sc0004618.1_g000017 Rmu_sc0009837.1_g000001
rosa_roxburghii Rroxscaffold_3G00228850
rosa_rugosa Rorug07G0268800
rosa_samantha Rh7AG423200 Rh7BG397400 Rh7CG443600 Rh7DG415500
rosa_wichuraiana Rw7G035010

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 648
AciI CCGC 4 cut(s) 156, 842, 1292, 1420
AclWI GGATC 3 cut(s) 965, 1076, 1492
AcsI RAATTY 3 cut(s) 130, 151, 171
AcuI CTGAAG 3 cut(s) 198, 1053, 1473
AfaI GTAC 3 cut(s) 17, 496, 1256
AfiI CCNNNNNNNGG 2 cut(s) 192, 579
AflII CTTAAG 1 cut(s) 485
AjnI CCWGG 1 cut(s) 1415
AloI GAACNNNNNNTCC 2 cut(s) 316, 348
AluBI AGCT 4 cut(s) 859, 1008, 1037, 1505
AluI AGCT 4 cut(s) 859, 1008, 1037, 1505
Alw21I GWGCWC 2 cut(s) 800, 1078
Alw26I GTCTC 2 cut(s) 103, 648
AlwI GGATC 3 cut(s) 965, 1076, 1492
AlwNI CAGNNNCTG 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 1185
ApeKI GCWGC 2 cut(s) 856, 1202
ApoI RAATTY 3 cut(s) 130, 151, 171
Asp700I GAANNNNTTC 1 cut(s) 8
AspA2I CCTAGG 1 cut(s) 395
AspS9I GGNCC 1 cut(s) 773
AsuC2I CCSGG 1 cut(s) 975
AsuHPI GGTGA 6 cut(s) 301, 512, 677, 862, 929, 1351
AvaI CYCGRG 1 cut(s) 1185
AvaII GGWCC 1 cut(s) 773
AvrII CCTAGG 1 cut(s) 395
BanII GRGCYC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 1346
Bbv12I GWGCWC 2 cut(s) 800, 1078
BbvI GCAGC 2 cut(s) 868, 1189
BccI CCATC 1 cut(s) 920
BceAI ACGGC 1 cut(s) 917
BciT130I CCWGG 1 cut(s) 1417
BciVI GTATCC 1 cut(s) 718
BcnI CCSGG 1 cut(s) 975
BcoDI GTCTC 2 cut(s) 103, 648
BfaI CTAG 6 cut(s) 95, 396, 558, 1143, 1172, 1307
BfmI CTRYAG 1 cut(s) 1348
BfrI CTTAAG 1 cut(s) 485
BfuI GTATCC 1 cut(s) 718
BisI GCNGC 3 cut(s) 857, 1203, 1421
BlnI CCTAGG 1 cut(s) 395
BlsI GCNGC 3 cut(s) 858, 1204, 1422
Bme1390I CCNGG 2 cut(s) 975, 1417
Bme18I GGWCC 1 cut(s) 773
BmeT110I CYCGRG 1 cut(s) 1185
BmgT120I GGNCC 1 cut(s) 773
BmiI GGNNCC 4 cut(s) 774, 784, 931, 979
BmrFI CCNGG 2 cut(s) 975, 1417
BmrI ACTGGG 2 cut(s) 201, 567
BmsI GCATC 4 cut(s) 227, 523, 625, 843
BmuI ACTGGG 2 cut(s) 201, 567
BpiI GAAGAC 1 cut(s) 1346
BpmI CTGGAG 1 cut(s) 801
BpuEI CTTGAG 2 cut(s) 125, 965
BpuMI CCSGG 1 cut(s) 975
BsaBI GATNNNNATC 1 cut(s) 1489
BsaJI CCNNGG 5 cut(s) 177, 395, 613, 689, 822
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 579
Bse1I ACTGG 4 cut(s) 62, 196, 573, 784
Bse3DI GCAATG 1 cut(s) 1260
Bse8I GATNNNNATC 1 cut(s) 1489
BseBI CCWGG 1 cut(s) 1417
BseDI CCNNGG 5 cut(s) 177, 395, 613, 689, 822
BseGI GGATG 2 cut(s) 197, 218
BseJI GATNNNNATC 1 cut(s) 1489
BseLI CCNNNNNNNGG 2 cut(s) 192, 579
BseMI GCAATG 1 cut(s) 1260
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 4 cut(s) 62, 196, 573, 784
BseXI GCAGC 2 cut(s) 868, 1189
BsgI GTGCAG 1 cut(s) 835
Bsh1236I CGCG 1 cut(s) 648
BsiHKAI GWGCWC 2 cut(s) 800, 1078
BsiHKCI CYCGRG 1 cut(s) 1185
BsiSI CCGG 1 cut(s) 974
BslFI GGGAC 3 cut(s) 337, 786, 1392
BslI CCNNNNNNNGG 2 cut(s) 192, 579
BsmAI GTCTC 2 cut(s) 103, 648
BsmFI GGGAC 3 cut(s) 337, 786, 1392
BsmI GAATGC 1 cut(s) 1302
BsoBI CYCGRG 1 cut(s) 1185
Bsp1286I GDGCHC 3 cut(s) 111, 800, 1078
Bsp143I GATC 6 cut(s) 242, 346, 970, 1081, 1390, 1484
Bsp19I CCATGG 1 cut(s) 822
BspACI CCGC 4 cut(s) 156, 842, 1292, 1420
BspCNI CTCAG 1 cut(s) 215
BspFNI CGCG 1 cut(s) 648
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 4 cut(s) 774, 784, 931, 979
BspPI GGATC 3 cut(s) 965, 1076, 1492
BspTI CTTAAG 1 cut(s) 485
BsrDI GCAATG 1 cut(s) 1260
BsrI ACTGG 4 cut(s) 62, 196, 573, 784
BssECI CCNNGG 5 cut(s) 177, 395, 613, 689, 822
BssMI GATC 6 cut(s) 242, 346, 970, 1081, 1390, 1484
BssT1I CCWWGG 4 cut(s) 177, 395, 613, 822
Bst2UI CCWGG 1 cut(s) 1417
Bst4CI ACNGT 3 cut(s) 736, 887, 1352
Bst6I CTCTTC 2 cut(s) 25, 118
BstAFI CTTAAG 1 cut(s) 485
BstC8I GCNNGC 1 cut(s) 1200
BstDEI CTNAG 2 cut(s) 202, 1382
BstDSI CCRYGG 2 cut(s) 689, 822
BstF5I GGATG 2 cut(s) 197, 218
BstFNI CGCG 1 cut(s) 648
BstKTI GATC 6 cut(s) 245, 349, 973, 1084, 1393, 1487
BstMAI GTCTC 2 cut(s) 103, 648
BstMBI GATC 6 cut(s) 242, 346, 970, 1081, 1390, 1484
BstNI CCWGG 1 cut(s) 1417
BstNSI RCATGY 1 cut(s) 1202
BstSCI CCNGG 2 cut(s) 973, 1415
BstSFI CTRYAG 1 cut(s) 1348
BstUI CGCG 1 cut(s) 648
BstV1I GCAGC 2 cut(s) 868, 1189
BstV2I GAAGAC 1 cut(s) 1346
BstXI CCANNNNNNTGG 1 cut(s) 320
BsuI GTATCC 1 cut(s) 718
BtgI CCRYGG 2 cut(s) 689, 822
BtsCI GGATG 2 cut(s) 197, 218
BtsI GCAGTG 1 cut(s) 823
BtsIMutI CAGTG 2 cut(s) 823, 1404
Cac8I GCNNGC 1 cut(s) 1200
CaiI CAGNNNCTG 1 cut(s) 209
CciI TCATGA 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 773
Csp6I GTAC 3 cut(s) 16, 495, 1255
CviAII CATG 9 cut(s) 68, 344, 407, 598, 640, 823, 962, 1116, 1199
CviQI GTAC 3 cut(s) 16, 495, 1255
DdeI CTNAG 2 cut(s) 202, 1382
DpnI GATC 6 cut(s) 244, 348, 972, 1083, 1392, 1486
DpnII GATC 6 cut(s) 242, 346, 970, 1081, 1390, 1484
Eam1104I CTCTTC 2 cut(s) 25, 118
EarI CTCTTC 2 cut(s) 25, 118
EciI GGCGGA 1 cut(s) 857
Eco130I CCWWGG 4 cut(s) 177, 395, 613, 822
Eco24I GRGCYC 1 cut(s) 111
Eco47I GGWCC 1 cut(s) 773
Eco57I CTGAAG 3 cut(s) 198, 1053, 1473
Eco88I CYCGRG 1 cut(s) 1185
EcoRI GAATTC 2 cut(s) 130, 171
EcoRII CCWGG 1 cut(s) 1415
EcoT14I CCWWGG 4 cut(s) 177, 395, 613, 822
EcoT22I ATGCAT 1 cut(s) 1200
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 4 cut(s) 177, 395, 613, 822
FaeI CATG 9 cut(s) 71, 347, 410, 601, 643, 826, 965, 1119, 1202
FaqI GGGAC 3 cut(s) 337, 786, 1392
FatI CATG 9 cut(s) 67, 343, 406, 597, 639, 822, 961, 1115, 1198
FauNDI CATATG 1 cut(s) 1408
Fnu4HI GCNGC 3 cut(s) 857, 1203, 1421
FokI GGATG 2 cut(s) 184, 205
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 3 cut(s) 857, 1203, 1421
FspBI CTAG 6 cut(s) 95, 396, 558, 1143, 1172, 1307
GluI GCNGC 3 cut(s) 857, 1203, 1421
GsuI CTGGAG 1 cut(s) 801
HapII CCGG 1 cut(s) 974
Hin1II CATG 9 cut(s) 71, 347, 410, 601, 643, 826, 965, 1119, 1202
HinfI GANTC 5 cut(s) 206, 292, 391, 449, 517
HpaII CCGG 1 cut(s) 974
HphI GGTGA 6 cut(s) 301, 512, 677, 862, 929, 1351
Hpy166II GTNNAC 2 cut(s) 495, 1297
Hpy188I TCNGA 3 cut(s) 205, 501, 865
Hpy188III TCNNGA 4 cut(s) 127, 168, 407, 1079
Hpy8I GTNNAC 2 cut(s) 495, 1297
HpyAV CCTTC 5 cut(s) 423, 427, 754, 865, 1431
HpyCH4III ACNGT 3 cut(s) 736, 887, 1352
HpyCH4IV ACGT 2 cut(s) 250, 1257
HpyCH4V TGCA 5 cut(s) 816, 856, 1043, 1198, 1265
HpyF3I CTNAG 2 cut(s) 202, 1382
HpySE526I ACGT 2 cut(s) 250, 1257
Hsp92II CATG 9 cut(s) 71, 347, 410, 601, 643, 826, 965, 1119, 1202
Kzo9I GATC 6 cut(s) 242, 346, 970, 1081, 1390, 1484
LmnI GCTCC 6 cut(s) 76, 782, 929, 977, 1081, 1502
Lsp1109I GCAGC 2 cut(s) 868, 1189
LweI GCATC 4 cut(s) 227, 523, 625, 843
MaeI CTAG 6 cut(s) 95, 396, 558, 1143, 1172, 1307
MaeII ACGT 2 cut(s) 250, 1257
MaeIII GTNAC 2 cut(s) 1109, 1149
MalI GATC 6 cut(s) 244, 348, 972, 1083, 1392, 1486
MboI GATC 6 cut(s) 242, 346, 970, 1081, 1390, 1484
MboII GAAGA 6 cut(s) 12, 105, 677, 1253, 1346, 1466
MhlI GDGCHC 3 cut(s) 111, 800, 1078
MluCI AATT 7 cut(s) 130, 140, 151, 171, 628, 991, 1225
MlyI GAGTC 2 cut(s) 400, 458
Mph1103I ATGCAT 1 cut(s) 1200
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 6 cut(s) 306, 339, 486, 507, 807, 1224
MslI CAYNNNNRTG 1 cut(s) 1364
MspCI CTTAAG 1 cut(s) 485
MspI CCGG 1 cut(s) 974
MspR9I CCNGG 2 cut(s) 975, 1417
Mva1269I GAATGC 1 cut(s) 1302
MvaI CCWGG 1 cut(s) 1417
MvnI CGCG 1 cut(s) 648
NciI CCSGG 1 cut(s) 975
NcoI CCATGG 1 cut(s) 822
NdeI CATATG 1 cut(s) 1408
NdeII GATC 6 cut(s) 242, 346, 970, 1081, 1390, 1484
NlaIII CATG 9 cut(s) 71, 347, 410, 601, 643, 826, 965, 1119, 1202
NlaIV GGNNCC 4 cut(s) 774, 784, 931, 979
NsiI ATGCAT 1 cut(s) 1200
NspI RCATGY 1 cut(s) 1202
PaeI GCATGC 1 cut(s) 1202
PaeR7I CTCGAG 1 cut(s) 1185
PagI TCATGA 1 cut(s) 406
PcsI WCGNNNNNNNCGW 1 cut(s) 247
PctI GAATGC 1 cut(s) 1302
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 3 cut(s) 206, 292, 517
PfoI TCCNGGA 1 cut(s) 973
PkrI GCNGC 3 cut(s) 858, 1204, 1422
PleI GAGTC 2 cut(s) 399, 457
PpsI GAGTC 2 cut(s) 399, 457
Psp6I CCWGG 1 cut(s) 1415
PspGI CCWGG 1 cut(s) 1415
PspN4I GGNNCC 4 cut(s) 774, 784, 931, 979
PspPI GGNCC 1 cut(s) 773
PspXI VCTCGAGB 1 cut(s) 1185
PstNI CAGNNNCTG 1 cut(s) 209
RsaI GTAC 3 cut(s) 17, 496, 1256
RsaNI GTAC 3 cut(s) 16, 495, 1255
RseI CAYNNNNRTG 1 cut(s) 1364
SaqAI TTAA 6 cut(s) 306, 339, 486, 507, 807, 1224
SatI GCNGC 3 cut(s) 857, 1203, 1421
Sau3AI GATC 6 cut(s) 242, 346, 970, 1081, 1390, 1484
Sau96I GGNCC 1 cut(s) 773
SchI GAGTC 2 cut(s) 400, 458
ScrFI CCNGG 2 cut(s) 975, 1417
SduI GDGCHC 3 cut(s) 111, 800, 1078
SfaNI GCATC 4 cut(s) 227, 523, 625, 843
SfcI CTRYAG 1 cut(s) 1348
Sfr274I CTCGAG 1 cut(s) 1185
SinI GGWCC 1 cut(s) 773
SlaI CTCGAG 1 cut(s) 1185
SmiMI CAYNNNNRTG 1 cut(s) 1364
SmlI CTYRAG 4 cut(s) 104, 485, 944, 1185
SmoI CTYRAG 4 cut(s) 104, 485, 944, 1185
SphI GCATGC 1 cut(s) 1202
Sse9I AATT 7 cut(s) 130, 140, 151, 171, 628, 991, 1225
SsiI CCGC 4 cut(s) 156, 842, 1292, 1420
SspI AATATT 1 cut(s) 1101
SspMI CTAG 6 cut(s) 95, 396, 558, 1143, 1172, 1307
StyD4I CCNGG 2 cut(s) 973, 1415
StyI CCWWGG 4 cut(s) 177, 395, 613, 822
TaaI ACNGT 3 cut(s) 736, 887, 1352
TaiI ACGT 2 cut(s) 253, 1260
TaqI TCGA 5 cut(s) 116, 241, 349, 1155, 1186
TaqII GACCGA 1 cut(s) 790
TasI AATT 7 cut(s) 130, 140, 151, 171, 628, 991, 1225
TatI WGTACW 1 cut(s) 494
TauI GCSGC 1 cut(s) 1423
TfiI GAWTC 3 cut(s) 206, 292, 517
Tru1I TTAA 6 cut(s) 306, 339, 486, 507, 807, 1224
Tru9I TTAA 6 cut(s) 306, 339, 486, 507, 807, 1224
TscAI CASTG 2 cut(s) 823, 1404
TseI GCWGC 2 cut(s) 856, 1202
TspDTI ATGAA 7 cut(s) 17, 56, 395, 482, 1110, 1178, 1395
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 2 cut(s) 823, 1404
Vha464I CTTAAG 1 cut(s) 485
VpaK11BI GGWCC 1 cut(s) 773
XapI RAATTY 3 cut(s) 130, 151, 171
XceI RCATGY 1 cut(s) 1202
XhoI CTCGAG 1 cut(s) 1185
XmaJI CCTAGG 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 6 cut(s) 95, 396, 558, 1143, 1172, 1307
Zsp2I ATGCAT 1 cut(s) 1200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.